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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0360500 |
| Transcript ID | LotjaGi2g1v0360500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9; TrEMBL-Plants: tr|I1LQV9|I1LQV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0360500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85799244..85802533) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTACCATTAAGAACACC TGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCTACTCCTAAGAGAG TGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATCAAAAGGAAGATCA TCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTACAACACCAACTCC AGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGA TTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGGAAGCGTTGGGGGT CATCTAAATGTAAGATTCAAGCAATGCTGTTGTCAACTTCCCTTTTTCTAGTGCTATTTTTGGTAGTCATTGTTGCTGAG TCTTGCTTTGTTTTAACAAATTAGTTCCTTTTTGCAGAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGC CTGTCAACAACAAAGAAAAGAGCATAAGGAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAA GGAAATGAATTGTTGACCTCATCCCCGGAAAAGGATATAGGTATCTCAATATAAATACTTATACTTGTATCCGCAATCAT GAAAATATGAAAGAATTTTATGTGTTAACTCTCTCTCTAACAGTTTTTTTTATTGAAACTTCCATGATGTATCAAGCATT AGTACTAAAAATGTCAACAGAATATTTGTAAGATTACTATGGTTAATAACTCGATTTATATATACTTTATTTGTTCAGAA AATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAATCTGTTTTGTTGAACTAAATGAAGGAGG TGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTT TGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCTGTAACTCTATTACGGATTCAAAGTGTT CGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAGGCATGTGTACTTACTTTGATAAAGACC TTTGCTGATTTCTTATGAATGAATTATGACGACATGTTTCAATTAGGAGGTTAACAGATTTTATATAGTCTACTAGATCC ACATTTCAAAAATATAAGCCACCTCCTGACACTAATCCCTTATTTGACTAAAATTTGCATTACTTATCCCTTGTATACTG CTTTTTGCTATCACACTATCTAGAAGCACTGAAGTTGTAGCTGTGTGGACTCACATGCTATCTCAGGATTGAGACACAGT TTTTTATCCAAACCATCTATGATACTTTAGAAGTCAAAATTTTCCTTGGAGTTCTGCAACCACTAAAGTGCATTGTCTTA CTAGGGAAATAGACTGTTGTCATTATGTCATTTTCACGAACCAACTATTCAAAAAGTTTAGTGTGTGATTAGGTTTTCAT TGTACTTCACGCTGATCCACATTGAAGTAAACGTGACAGTAACTTGCTTCTCTGTTTATGCGTTGGGGGGGGGGGATGTG TATCAATGCAAACAGGAATTAAAACACACACTAAGATGTTGGGTTAAGTACACACCCCTCATGGAAAAGCTCATAGGAAG GGTGGAGACCTACTTGTGCTGAAATTCAAATTTTTATTGATCACTTGGTTATAGAGGCTCTGACACCATAACATGAACAA CTATCTCAATTTTAGGTTTTTGGTGAAGATACATAAATGGTTTTATATTATATATTCTAACAATATTTCTTGATAGCTTC TTGTACTGTGGGTTATTACTTATTAGTAATGATTCTCTTATAATTTGTCTTCTCAATTTAATAGGTTTTGGCAGGAAGTT CCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTGGAGCAGCTATTGGTAAGACTAACAATCATCTCTGA ACGGTCAAATTCGCAGTTTGGTTAGGCTCAGTTATTCGCCTCTATGCAGGTTTCAAAAATGGGAACTGGCGCGATTGCCA TATCTCTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGGTAAGTTTGCAAAACATTGG TAAATATTGATGTACATTTTTTTTCAATGTGATACATATTTTTCTTTTTAGCCAATTTCATTTCATGATACTAGGTTGGG TTTTCACTGATTTATGCCAATTCTAACATTTTCTTAAAAATCTTGTGTCCAGTGAAGAGCAGGTTCATCTGGATCTATGC ATCCGTCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCTGTGGTAATGGATTTTTGTCTAAACTTCATTT TTTTACATGTACATTTCACTTGAAAGTTGAAACCAAGGTTGATAATATTGTATGAGAAATAAATGGTCAAATGAATCAAG TGCTAGATTTTTGTCACTAAAAGAAAAATGAATTGTTTGAGATTTGGTACAGATGAATTCTACCCTCTCAATTTTGTAAC TTAAATGACAATTTCATTGGAGATGTAATGGAACTAGATGTTCCCAACCAGATTCTAGAGAAGTTCTGGTTTATGAATAT CCTGATTCCACATGCCTTATTGCCAAATGTGGTGGCTTTGGTGTTAAGTTTAGAAATTTGCAATCCACACTTCGTGCATG TTTGGAAATCCTTTCACAATTGATTCTTAGGTCAAAATCAATTTTGGAGAGAAGCTTTATGAGTAGCTTCTGGGTTTCAG AATTGATTTCTGAGAAATAGGAATGGTCTAGAGGAAGAACTCTGGCTAGCATTCTGACTTGTTATATATATTGTCTTTGT TACATGCAGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAG TTCTATCCTTGTGGAGGTTTTTAGATGGAGGAGGAGATGGCAAGCTTTATCAGAGCAGCAACAACTACATGGCCCTCAAA CTGCAAACACACCACGTTCAGGCAGTGTTACTCAACCTGTGGTGCAAAATCAACAGAACTGAAACCAGAACTGCATCGAT GTTTTTTTAG
CDS sequence (LotjaGi2g1v0360500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTACCATTAAGAACACC TGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCTACTCCTAAGAGAG TGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATCAAAAGGAAGATCA TCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTACAACACCAACTCC AGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGA TTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGGAAGCGTTGGGGGT CATCTAAATAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAGAAAAGAGCATAAG GAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGACCTCATCCCCGG AAAAGGATATAGAAAATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAATCTGTTTTGTTGAA CTAAATGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACAAAGAATGTGCTAT TAAATGGTTTAGTTTGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCTGTAACTCTATTAC GGATTCAAAGTGTTCGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAGGTTTTGGCAGGAA GTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTGGAGCAGCTATTGGTTTCAAAAATGGGAACTGG CGCGATTGCCATATCTCTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAAGAGCA GGTTCATCTGGATCTATGCATCCGTCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCTGTGGTTCATGTG CAAGCAGTTTTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAGTTCTATCCTTGTGGAGGT TTTTAGATGGAGGAGGAGATGGCAAGCTTTATCAGAGCAGCAACAACTACATGGCCCTCAAACTGCAAACACACCACGTT CAGGCAGTGTTACTCAACCTGTGGTGCAAAATCAACAGAACTGA
Protein sequence (LotjaGi2g1v0360500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGITEETTHVPPRKRQNLQLEVPLRTPEECSQDFVAIKMPQTPSPTPTPTPKRVNFLVSSRSVDTPTNNSPGNSASKGRS SIRSLLPKLSFRNRTPADIEKATTPTPEVSSSGVRERPLISRSLSLSKIFTPRIKRTSSLPVEEIGHSNAESAHGGSVGG HLNKRETQRKIARSLSVPVNNKEKSIRRMDSFFRVVPSTPRVKEGNELLTSSPEKDIENEDDDGEDIPEEEAVCRICFVE LNEGGETFKLECSCKGELALAHKECAIKWFSLKGNKTCDVCKSEVQNLPVTLLRIQSVRNRIIGSRSQLEDLDGYRFWQE VPVLVIVSMLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHV QAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQTANTPRSGSVTQPVVQNQQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 116 | 116 | - | – | |
| Phobius | 1 | 320 | 320 | - | – | |
| PANTHER | 2 | 453 | 452 | 9.4E-238 | – | |
| PANTHER | 2 | 453 | 452 | 9.4E-238 | – | |
| MobiDBLite | 51 | 88 | 38 | - | – | |
| MobiDBLite | 97 | 111 | 15 | - | – | |
| MobiDBLite | 204 | 225 | 22 | - | – | |
| Gene3D | 219 | 291 | 73 | 1.1E-14 | ||
| ProSiteProfiles | 226 | 288 | 63 | 19.361 | ||
| SUPERFAMILY | 230 | 285 | 56 | 4.74E-13 | – | |
| SMART | 233 | 282 | 50 | 1.0E-17 | ||
| CDD | 234 | 282 | 49 | 3.53799E-15 | – | |
| Pfam | 234 | 281 | 48 | 4.8E-11 | ||
| Phobius | 321 | 341 | 21 | - | – | |
| CDD | 321 | 434 | 114 | 1.92819E-5 | – | |
| TMHMM | 340 | 362 | 23 | - | – | |
| Phobius | 342 | 346 | 5 | - | – | |
| Phobius | 347 | 364 | 18 | - | – | |
| Phobius | 365 | 375 | 11 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| Phobius | 376 | 397 | 22 | - | – | |
| Phobius | 398 | 402 | 5 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 403 | 425 | 23 | - | – | |
| Phobius | 426 | 467 | 42 | - | – | |
| MobiDBLite | 441 | 467 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0360500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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