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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0362800 |
| Transcript ID | LotjaGi2g1v0362800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit beta type; TAIR: AT1G56450.1 20S proteasome beta subunit G1; Swiss-Prot: sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4; TrEMBL-Plants: tr|I1NC66|I1NC66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0362800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86024428..86027881) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGTCGTGTTAGTAGTATGCAGTTCAACCACCCCCACCAAAGTTCTCACTCACCCTGTTTCTTATGTCAATGATAGGT TCCTATGGGTCTACCCTGCGATACAAGAGTGTTGAGCGTTTGAAGTCTGTTGGGAAACATTCCCTTCTTGGTGCTAGCGG GGAAATAAGTGACTTTCAGGAGATCCTACGCTACCTCGATGAGCTTATGTAAGCCTTGGTTATCTGTCATAAGATAAGGA CAGTAGAATCTTCTCAATTAATTGCTTTGCATTTGCTATGTTTCCATACCTTGATTTATTTATTTTGTCTCATGTCAAAC TTATCAGAAATGAGTCCATCCATGTATCCACCCCCTAGTTATTTCTGATTTGATTACTTCAGCAATTCCATGTAAGTTTT GATTTTGAATTTTGACTGTTGCAGCCTTTCTGACAACATGTGGGATGATGGGAACTCTCTTGGGCCTAAGGAGGTGCACA ACTATTTAACTCGAATGATGTATAATAGGCGTAACAAGTTCAACCCATTATGGAACTCCCTTATACTTGGTGGTGTGAAG AATGGACAAAAGTACCTTGGAATGGTATGCCTTGGCCTGTATTTTTATATTGTTCAACAATGAGTAGCCTGCAACTTTAC TCAGTTTTGTTGCTTGTGAATCTTTACCAGGTTAGCATGATTGGAGTTAATTTTGAAGACAATCATATAGCCACTGGGCT GGGAAATCATCTTGCTAGACCAATTCTCCGTGATGAGTGGCATGAAAATTTGACCTTTGAAGAAGGTGTCAAGTTGCTGG AAAAATGCATGCGTGTGTTATTATATCGTGATAGATCTGCTGTCAACAAGATACAGGTTTTCTTCTTTCCCCTTTTTCTT CTTGCATCCATCTTCCCCAACCCTGTCCTCCCAAGCGCATAGAACATAAATGTGTAGGCAGTGTAGCTAAATCTTTAGAA AGCTGCAAAGGGGGATTAATCCACATATAGAGTGTAGAAATATGCTCTCTACTAGGGTCTCAGTGAAAAAATGGCATACA AAAGGAATCAGAGTATCATCATCAAAGAGTAGATTAAAATTTCACAAGTTGTAATGGAATTGATATATCAACATTTTGTC ATACAATTTTCTAACACTTTTATGATACTGCAAAGAAGTTTGATTAGTTTTAATTTTTTGGGTTATCAATGAAATCGGCA GGGGGTTTAGGGGACATATAATATATTTTTCTTGGTTTCTGCTAGGACTTTTTCCTGTAATTCTCTTGGTTCCTTTTGCA TTCAGCCTTTGTTAGAAAGCCAATTTGTTTTTTCAGTTACAAATTTTAGATTTCAAATTTGTCCCTTGAGATGCATATTC CGTAGGTCAAAACATTTGAAAGGGAGTTTAGCTAGTGGGGCAACTGGTAAGTGATGGCTCCCATGGTACCTTTTCTCAAC TTGTAATTGCATCCTCATTTGGTTTAATCCTCACTTGGCACAGAAAGATATTAAAAGAAAATAGTTAAAAGGTTTTCTAA GCACATACAACTTAGCTATATTATGTGAAATTTATATCTTTCTGAGTATGTTTCCTTTCTTTTCCTTGGCATGGGTAGAA TAATTTGATCTGTCTTCCCAACCCTCTTTTCCTCGATCACTGCTCCTCTGCGACACCAACCCCAACAATGTCAAAATTTG ACCATTTTAATATAAATTAAACTCGCTTCTCAGTATTTAACTGAGTGCTCTCATGCGAACTACTTTGCAAATATACTGAC AAAATTATTTTAATACGTAGAAAAGTAAGTAAACAGTTTCTGTTTCCTCTGTCGAAACCCACCATTCAGTAGTCATCTTT CTTCTATATTGCAAACTCCATTAACAAAAAAATCCACACTTTCCTCTTTCGTTTTTTCCCACACCATCCAAAAATCAATC CCTTTGTCACTATCTTTCTAAAATGACAAGTTATCCACACTCACTTGGGTATATTGGCTCTCCAAGCTATGGATTTTTAA TGAGTTATGATTCATACACACCTCCACCTCTTTTCCACCACCTTTTTCTTTCCATTTCTCTCTTCTCTATCAATCAAATC ATCTATCACATCTTTACCTTCTCTCTCCTGTCTTCCTATCTCTCTTCCTCCACCTCTTCACACCTAAAAAATGAGGTGTG AACAAAAGATTATCCATTTTTAAAATCCGCCAATAAACCTCATTCATCTGCGACAACCCTCCTTCCTCCGGTCACAAAGG TGGGTGTTGTTGTGGCCGCCGGGAGCTTGGGCTGAACGAGACTCCCTTCCACAGAAGGTGCAGATGTAGTGGTTCCCTTG ATGCTCCTGGTGTCATCTGTGAAGGATCTGATCTCCCACGACTCGTCTTCTGCTTCCTCACGGTGCTCCCTGTTAGGGTT CCACATCAATAAGGCGTAGGTGGTGAGGAGCTAGGGTTTGGTTGGGGCTGGTGGTTTTGGAGTTGTGATGATGATAATTT ATGGATATGGTACATGGACACAAAGGGATCTCTGCTGCAGCCATGTACTGTCACTGCCATTTAAGATAGATGGTGGGTAG ATTAGTGATGGGGATGAAATTGGAGGAGAACAGTTTATTAATTAGGGGAATGGGGTTACAATTAACGAAGGGGTCATGAC AAAATTAAGCTTTTAAAATATCAAATAGATGCCTTTGGAAGTCGGCGCAGTGTCTTTGAAACAATGATTTGTTGTACATC AATTTCGTTCTCTAGCTCCAGGGTGTACTGGAGTGCAGCCCACAGGTTTTGCAAGTTAGAGGAAGCCTCAAGTTACAGGT TTAAATCTGCACCACTGTGTCGTTGTTGGGGTCGGCGGCACTGAGTAGTAGCAGTGGAAGAGGAAGTGCTGCCGCCTATA GTAGAGTGGGGAAGAAGAACTGTCCATAGCAGTGTCTGATTGGGATGACATGGACTCTAACTAAGTTAATTTATCCATGT CATTGCAAAGTCAGAAAACGCTGTTAAATATTGGATGGAAAATTAACTGGAGAACAAAATTTGTTTGATTAGAAAACTCG AGGGACTTAAATCAAGCGAAAATAGTAGGGGGTTCAAAATCACCTAAACATCATACTAGGAGGGCCAAAAGTCTATTTAA GCCAAACGGATAGTAGGTTATTTGCAAAACTAACTGGAAGATGAAAACACCTTAGTGGATGGTTGCTAGTCAGTGTATGT AATTGTAAAAAATATCTTTTTGTTTTAACTTTCTCATATTCGTTATAATTTGTTGGATTCTTAATATAAATTCCAATTGA CTTGAGTGTATTATTCATTGCTTTATCATGATTAGTGCATCTGTTATGTGGGATTCACAGATTGCTAAAATGACTGAAGA AGGTGCTACTATGTTCCCCCCATTCTCGCTGAAGACATACTGGGAGTTCTCTGCTTTCAGGAATCCTACATTGGGTGCTG AAGGATCGTGGTAG
CDS sequence (LotjaGi2g1v0362800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGATAGGTTCCTATGGGTCTACCCTGCGATACAAGAGTGTTGAGCGTTTGAAGTCTGTTGGGAAACATTCCCT TCTTGGTGCTAGCGGGGAAATAAGTGACTTTCAGGAGATCCTACGCTACCTCGATGAGCTTATCCTTTCTGACAACATGT GGGATGATGGGAACTCTCTTGGGCCTAAGGAGGTGCACAACTATTTAACTCGAATGATGTATAATAGGCGTAACAAGTTC AACCCATTATGGAACTCCCTTATACTTGGTGGTGTGAAGAATGGACAAAAGTACCTTGGAATGGTTAGCATGATTGGAGT TAATTTTGAAGACAATCATATAGCCACTGGGCTGGGAAATCATCTTGCTAGACCAATTCTCCGTGATGAGTGGCATGAAA ATTTGACCTTTGAAGAAGGTGTCAAGTTGCTGGAAAAATGCATGCGTGTGTTATTATATCGTGATAGATCTGCTGTCAAC AAGATACAGATTGCTAAAATGACTGAAGAAGGTGCTACTATGTTCCCCCCATTCTCGCTGAAGACATACTGGGAGTTCTC TGCTTTCAGGAATCCTACATTGGGTGCTGAAGGATCGTGGTAG
Protein sequence (LotjaGi2g1v0362800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMIGSYGSTLRYKSVERLKSVGKHSLLGASGEISDFQEILRYLDELILSDNMWDDGNSLGPKEVHNYLTRMMYNRRNKF NPLWNSLILGGVKNGQKYLGMVSMIGVNFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVN KIQIAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 167 | 167 | 28.223 | ||
| PANTHER | 3 | 190 | 188 | 2.2E-88 | – | |
| CDD | 3 | 177 | 175 | 7.61053E-97 | ||
| PANTHER | 3 | 190 | 188 | 2.2E-88 | ||
| Gene3D | 3 | 191 | 189 | 1.1E-45 | ||
| SUPERFAMILY | 5 | 187 | 183 | 8.14E-44 | ||
| Pfam | 6 | 166 | 161 | 2.7E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi2g1v0362800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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