Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0363800 |
Transcript ID | LotjaGi2g1v0363800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tetraspanin family protein; TAIR: AT3G45600.1 tetraspanin3; Swiss-Prot: sp|Q9M1E7|TET3_ARATH Tetraspanin-3; TrEMBL-Plants: tr|I3T275|I3T275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0363800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86137844..86144175) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAACAAGCAACCATTTGATTGGTGTACTAAACTTCTTAACATTCCTACTCTCAATTCCAATTCTAGGAGGTGGAAT CTGGCTAAGCAGCAGAGCAAACAACACAGACTGTCTCAAGTTCCTCCAATGGCCATTAATCATCATCGGCGTGAGCATCA TGGTGGTATCATTAGCCGGTTTCGCCGGCGCGTGTTACCGGAACACGTTTCTGATGAGGCTCTACCTGGTGGTGATGTTT TTGGTGATTGCAGTGCTGATTGGTTTCATAATCTTCGCGTACGTGGTTACAGATAAAGGGTCAGGGAGGAGGGTGTTGAA CCGTGGTTACATGGATTATTACTTGCAGGATTACTCTGGGTGGTTGGAGGAGCGTGTGGCTAGTCATAGCTATTGGGGGA AGATTGCTTCTTGTGTGAGGGATTCTAAGGTGTGTGCTAAGATGGGGAGGGTGGATTCTAATGGGATTCCTGAACCTGCT GATGTGTTTTATCTCAGAAAGCTCACCTCTGTTCAGGTTTGTCTTCTTCCTCAAATAGTACTTTCTTATTGGATGCTTGA TGTGTATATGTTAGAACATTCTTTTACGGTTAGATTCTAAAATCAGAATCAATTTTGGGGAAATTAATTGTTTCTATTGT CTGAATAGCTTTTGAGTTTCAGAAAGAAATTAATTGATTCTATAGGTGATCATATGCCGAGGTTGCTAGATACATATTTA GAAATCTTTCTACAATTGATTCTTTATCTCTAAACTCGACAGTCAGGGGAGTTGTACTAAGTGATAAGCACACAACCTGG TTATGAGGAATAGTGTTAGAGTGGCTTAGCTTTAGGCTATGTCTGTATTTCCGTTTGGTGCCCCTAAAGTACTTTTGGTT CATGTGTAACTCTGTGCCATGATGTTTGGCAACTTCCAACTCACATTCACCCAACTCAGTTTGACCCCTAAACTAGCTTT CATCCCAACTTAACTCAAGTGTAACTTCTCAGTTCAGTTGAGTCCTTTGGGGGTGATTAATCATGAATTTAAATACATCA CCCAACCTGTAGTGACATTAAAGCCCTCATCTTTCATACCTTTGAGCCCACCACCACATCTAGAAACTCATGCTTCACCG TTACACACCACCTTCGAGACCACCGCTTCATCGCACACCACATCACCCACCACCTCACCACGCCGCGACCTCCGCCATCG TATTCCAAGAAGCCACTACAAATTCGTTCGTCCTCCTCTACCCCTTCATTGGAACACCATCATCACTGAAGTTGCGAACC ACCGCGGCAGCACCATCATCATACTAACAATCTCTCCTTGGCCAGCGCGAGGAACACTGTCGCTTCAGATTGCCTCTGAG AAGCCACCGTCAATCTCGATCTCAAACTCTCTCTTCCTCCCTCACGTTTCTTATCCCCTTTCCTCTGTTGGTGTGAGATG ATTGGGCCTGAGCCTGGTGTTTAAGTTAGGCTAAATTTTCATTTTGCATTTCATTTTCTGTTTGGTGTTTTGATTTGTTC TGAATTTATTAAATTTTGATGGATTAACTATAAAATAATTGCATAAAAAACATGTTATTACTTAATATGTACTTAAACAT GTACCAAAAAAAAAGTACTTAAACAATAATGAAAATAATAAATTTAAGGAATAATAATTTCAAAACCTTCACACAAAAAT TCATTATAATAATCATACCCTTTTTAGTAATTAGACACATTTAAAAGTGCTTTCAACTAAATTATCCAAACAACATTCCA TTCATCAAACTTACTTTTAAAATAAAAAGTATCCAAACATAAATCACATTACATTCAACTCACATTCACTCAAACTCTAT TTTGCAAACCGACATTCACTCAAACTCCGTTTTGCAAACTGAAAACCAAACACACACTTAATCGTTATAGATTCTAAAAT CAAAATCAATTTCAATGGTAATGATAATGATAAGCTTTTGTAAGTTTTAGTTTTAGATTCTAAGAACCCTCTATGTAAAA TTAGTATAAGAAAAACTTTTTTTAGCCAAAAAGTATCAACCGTCAGTCAACAATCACTAATTCACTAAATGGTAAATGTC TGGCTATATTATGACCTTTGTTCTCATAAATGATTATCAAACCCTCATCCTCATGGTTAAAGGACAAAATGTGCTAACCA CTATACTCACTTAATATATAAGAAGTTAAAACTCTCATGGAAGGGGTTGGGAGTCAGGATTTCATTTATGAGCTTTCTTG AAGTGGTTTTCAGTTTCTCTTTCTGTTTTGAATTTTGAAGTTTTTGAAAAAAACTTGTGACCGTTTTTTTTCCTTGAAAA GTTTTCTTTTAAGTGCTTTTAAAGAAAGTATGGGTGGCACCGGCAGAGAAGCAACTTGAAATGAGATGAAGTGCATGTGT TTGATTAAATGGGTAGATCTGAGAGGAACCCTGCAGCATGTGTGGATGATGGGTTTTCACTCGTCAACCCTCCGAAACTT GTGGTTCTTTGCCCAATTTATTGCAACCAATATTGAAAGAGGACAAAAAATATATAAGAAGAAACAAAAAAATGACATTG ACAAAATTGTCATCACATTAAAATAATATAGAAGATTATTGAACAGTATTTGGAATTGGAATTGCGGTGGCATCACTGCT AGATAACAAACGTGCCATGTCATGCTTTGATTGAATATTTTTTGGTATACACTATTAGAATTTAGGAGGAGGCTTAACTC AAAAAACTTAATTTAAAAGTTTATAATTGTACTCTAACTCTCATATATATAAACATTTCAGTAGTTGTATATATCTGTAA TAAATGCATTTCAAAAAATATATATCTATAATAAATGTGGAACTTAACATACACCTAATTGGGCTGTGATATGAGTGGTG ATAGTACTGTTGTAGTGTTTAAAAATAAGAAATGGGTTTTTACATAATTTTCAAAAGTTTGAATCTCATAAAAGAAGAGA GAACGATACAGTGACCATGATATGAGATATCATGAGAGTATAGAACAGGTTTATGAGCTATGTCGACAGATAGAAAGTGA TGGAGGTGGCGGGACCATCTAGTATTGAATAATGGTGTTCACACTTGTGATTGCAGATAATTTTAATCTGTTACTTAACA TAGCATAATTTCTTAAATTTGAAGGGACATGTGTTGCTTCTAGGTAGTTATCATATAAAGTACGTTTCAAAAAAAATTAT TATATAGAAATTGTGTGTTCGAAAGAAATTGTGTGTTTACGTACGGGTATTAAAGAACTCTAGAACTTTGACCAAAGTTT TGGGCCACTGATTATGGGCTTATCAACTTCTCTTTTTTTAGTATTATTTTGTTGGATTTAATTTAATTTATATGTACCGA CAAGTGTAAACAGTTTTACTTATGCATTCAATTTAATCGCATTTCTGCATTTCTCGTTTAATATTTTTAAATTAACTTAT GATATGTTATATTGATTATAATTGAATGATTATGTAAATTTTTCTTACAGTGCATAGTAATTGATATCTATTATTTTATT TAGTAAGACTTTTCTTTTAGTATTGTTTTGGCCAAATTGCTAAAATTTTATTTTTTTGGTAATTAATCATCTTGTTGCCG ACCTTTGCGTTTGTAGTTAGACCATTATTGACTTTCTCTCTGTTTATATTTTGGCTCCATTTAGAACTTTATCCTTTTTG CAGTGGCAAGCAAGCATGATGTGTACATGTAACCTAATACAATAGTTGTCGCTTTCTCCTTTTTACAAGCTTCCCCCATC TAACATTAGAATGATCTTAATTATTCAATTCAAACTCTGAAAAAGTTAGGTGACTAATTAAGTAGGGAGAACCTAATATG CACCATTTTTAGGTGGTGTAATTTTACACTATCTACTTTAACTGGGTATAGCAGGTCAACACATAATATTTTTTAAGAAA AAACATCATTAAAAATTTGTCATATATTAAATATCTTTAAAAAAAGATGTGTTGACCTGTTATAGTAAGTTAAAAAAAGT GGTCTAAAATTAGACCATTTTAAAAGTGGTCCACATTAGGGGTCACCTTTAAGTAATGTGAATATTAATATTAATTAATA AAAAGAGTATGTTCAGTTTTTTTATCTGTAATTAAGTACTAAGGTCTCTTAAAACAAAACCAGTTGGGACCTTTCTCTTT TTTGTTTGCCTGTAAGTAACAGTATGTACAAAATTGTAAAAGAAATATGGATCCTTTCCATGATTTTCCACACCCAATAA TGCAACTTCATTTCCACCTATTTTTGTTTCTATTCCTCTCCTTTTATCATCTATCACATCTACAACTTTATCTCTCTTAC TTTTTCTTTTCTTCCTATCTCTTTCCTCCTCCACCTCCACCTCAAAATAAGATGTGAAGAAAACATTTTCCTTTTTTAAG TGATCCACTATTTTTAACTGTTTATATAATAGTTTTTTAGTTGAAGATTCTTAATCAACGGCTATTAACAATAGATTACC GATTACCGGCGGACCATTACCCTATAACTTGTCATTATTAGATAAATGTTAAATTTCTTTACTACATTTATTGATTTAAT ATAGATAATAAAATATAAATGAAATTATGTTAAAGAGACTAAAGAGATACATGAGTGGTGTCTAATGTAGTATGATAGCA AATAATTACACTCTAGGATTTTATGTATGTCAATGATTAATATATGAGATATTTATAGCTATGCATATATGGTCAATTGA TTTATGATTTATGCCAACGACTTCAAAACAGTGATGATTTCTTATGTGGTCGGTATTACAGGTTGCAAAATTGACTTGAC AGTTTTCTTATCTTATTGTCTTCTCTTGTTTTGCTCTAATTGGTTGATTAAACTCTGGCATTTTGGTCCTTAACTAGGCT GGTGCCTGGCCCGCATGCGATCCATGCCACATGAGGAAGCAACTTTTTGTTGCATCCACAACATTTTTCTAGGAGAAAGT AAAAGAACAATTATAGTTTAATAGAAACGAGACACAAAAAGATGATGACAAAATGGAAATCTCTTCTTTTCAAAACACAA TTTAGAACCTGGAACCAACTTAGAAACAATTGGATATGGATGATTCAAAGTAGTACATGTAACATGCTTCTTTAAAGTAA GATTTTGGGTTCCAATGTTTCACATGGAAGTAACTTCTATCGGAAGAGTTAGATTAACCATAATACAAAATTATATTCCA TATATGTTTGGTCAATCCAAAAATCTTAAAATCAGCCCACTTTAGTCTCTATTGAATCAAAGCACACTCACGTATATATA TATATATAGAACTCCTCCCTCATGTGCTTAATAAGACGAGAAGTGTTATCAACACTTACTACTCGCTCTAACACTCTTAC TTTTATTGGTTGAAATCCATATAGGGCCAACTAAATTACTAGGAGCTTACTCATAGTTTGGTGTGACCTATTTAGATTTT AACTAATAAAAGAAAGTATTGGAGAAATAGTGTGAAAGTGGGTGATGCTGACATTTCTTAAATAATATTAAGAGTATTTG GATAAAATGTAATGCTTTCATTATAATTTACAAGGTCACTAATGGATATCCAATCTTTTAGTTTGTATTTAAATTTTAAG TTACTTTGGCATGCATTGGACTTGGTTAGTCATTAGGCCATTTAGTGGGTCACGATCGTAATGAAGCAGCTGGCTTTTGA GTTGAATTGAATTATTGAGATTGTTTTTAGCTTAATCAAATACATTGCATGTTTAGTTGAATTTATTTTTCCTCATAATT TTCTTCTGACATGCAAATGTTACACTTAAGCTTCTCTCTAAAATTGATTTTGGCTTAATAGTAGATTATAGAAAGATTTT CAAACGTACTAACTTGGGCTAATTCCTTCTCAATCCTGGCTTTATTTCTTCAAACTTGTCACTAACATTTAAGGCTAAAG AGTTTGATTCTAATTCTATACATGTGATGCCATTTGTTGAAGTAATGTTCTCCTCATGTGTATGTAGTCTGGTTGCTGCA AGCCCCCAACAGATTGTGGCTACATCTATCAGAACGAGACTGTGTGGAACCTTGGATCAGGATTAATGTCTGCGAACCCT GATTGCTCGAAGTGGAGCAATGACCAAGGGTTTCTCTGCTATCGCTGTGATTCTTGCAAAGCTGGTGTGCTAGCTAGTCT CAAGAAGAGTTGGAGAAAAGTTTCGGTCATCAACATTGTTGTTATGATCATTCTTGTGATTGTTTACATCATTGCTTATG CAGCTTACAGGAACAACAAAAGGATGGATAATGATGAACCTTATGGTGAAGCTAGGATGACAAAGTCACATCCTAGTCAC TTTCAACTTTAA
CDS sequence (LotjaGi2g1v0363800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACAAGCAACCATTTGATTGGTGTACTAAACTTCTTAACATTCCTACTCTCAATTCCAATTCTAGGAGGTGGAAT CTGGCTAAGCAGCAGAGCAAACAACACAGACTGTCTCAAGTTCCTCCAATGGCCATTAATCATCATCGGCGTGAGCATCA TGGTGGTATCATTAGCCGGTTTCGCCGGCGCGTGTTACCGGAACACGTTTCTGATGAGGCTCTACCTGGTGGTGATGTTT TTGGTGATTGCAGTGCTGATTGGTTTCATAATCTTCGCGTACGTGGTTACAGATAAAGGGTCAGGGAGGAGGGTGTTGAA CCGTGGTTACATGGATTATTACTTGCAGGATTACTCTGGGTGGTTGGAGGAGCGTGTGGCTAGTCATAGCTATTGGGGGA AGATTGCTTCTTGTGTGAGGGATTCTAAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGCTACATCTATCAGAACGAG ACTGTGTGGAACCTTGGATCAGGATTAATGTCTGCGAACCCTGATTGCTCGAAGTGGAGCAATGACCAAGGGTTTCTCTG CTATCGCTGTGATTCTTGCAAAGCTGGTGTGCTAGCTAGTCTCAAGAAGAGTTGGAGAAAAGTTTCGGTCATCAACATTG TTGTTATGATCATTCTTGTGATTGTTTACATCATTGCTTATGCAGCTTACAGGAACAACAAAAGGATGGATAATGATGAA CCTTATGGTGAAGCTAGGATGACAAAGTCACATCCTAGTCACTTTCAACTTTAA
Protein sequence (LotjaGi2g1v0363800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTSNHLIGVLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMF LVIAVLIGFIIFAYVVTDKGSGRRVLNRGYMDYYLQDYSGWLEERVASHSYWGKIASCVRDSKSGCCKPPTDCGYIYQNE TVWNLGSGLMSANPDCSKWSNDQGFLCYRCDSCKAGVLASLKKSWRKVSVINIVVMIILVIVYIIAYAAYRNNKRMDNDE PYGEARMTKSHPSHFQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
PANTHER | 1 | 142 | 142 | 2.5E-133 | – | |
PANTHER | 1 | 142 | 142 | 2.5E-133 | – | |
Phobius | 6 | 29 | 24 | - | – | |
Pfam | 6 | 225 | 220 | 3.7E-30 | ||
PRINTS | 6 | 29 | 24 | 1.0E-8 | ||
TMHMM | 7 | 29 | 23 | - | – | |
Phobius | 30 | 40 | 11 | - | – | |
PRINTS | 39 | 65 | 27 | 1.0E-8 | ||
Phobius | 41 | 62 | 22 | - | – | |
TMHMM | 44 | 66 | 23 | - | – | |
Phobius | 63 | 73 | 11 | - | – | |
PRINTS | 66 | 94 | 29 | 1.0E-8 | ||
TMHMM | 73 | 95 | 23 | - | – | |
Phobius | 74 | 96 | 23 | - | – | |
Phobius | 97 | 209 | 113 | - | – | |
PANTHER | 144 | 257 | 114 | 2.5E-133 | – | |
PANTHER | 144 | 257 | 114 | 2.5E-133 | – | |
TMHMM | 208 | 230 | 23 | - | – | |
Phobius | 210 | 230 | 21 | - | – | |
Phobius | 231 | 257 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0363800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…