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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0366100 |
| Transcript ID | LotjaGi2g1v0366100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT4G19800.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q7M443|CHIT2_TULBA Chitinase 2; TrEMBL-Plants: tr|A0A0L9V6Z7|A0A0L9V6Z7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86369661..86370951) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATTCATCCCAACTTTGCACATTGCTTCTGAAAATACTACCTTTCTTTAATTTGGCATAACAACAATGGAACTTCCT ATTCCAAACCTTTGCTTTACCCTTTTCTTCTTCTTATTTCTTGCAACAACCAACGCAAGCTTATTCCGAGAATACATAGG AGCAGAGAACAATGTCAAATTTTCAGATGTTCCTATTAACCAAGATGTCGAATTTCACTTCATTCTCTCCTTTGCTATTG ACTATGACACATCATCATCTCCTTCTCCCACAAATGGAAAATTCAACGTTTTTTGGGAAACAGAAAACCTAACCCCAACC CAAGTTTCTTCCATCAAGAGCAAGAACTCAAATGTCAAAGTAGCCATGAGTCTTGGAGGAGATAGTGTTGAAGGTGGCTC TGCTTACTTTGATCCATCTTCAGGTAAGGGTAAAATGGGTAGAAATTTTTTCCTTAATAGAATAGTACTCAAAAGTTATT TTTTCACCCATAAAAAGTTTATATTGCCTCTCTTAACCAATTACTTATTTTTATTTCATATTAAACTTTCGCTCCTCTTA CCCATGTTTCTGATCTTGTCCCTGATCATCAGCTGATTCTTGGGTTTCTAACGCCGTTTCTTCGCTTACAAACATAATCA AGGAGTACAACTTGGACGGAATCGACATTGACTATGAGCATTTCAAAACAGACCCTGAAACATTTGCTGATTGCATAGGG AGGGTAATCAAGACTCTTAAAGCCAATGGGGTTATCTCTTTTGCTTCAATTGCTCCATTTGATGATGATCAGGTTCAGAG TCATTACATGGCCTTGTGGAAGAGTTATGGGAACCTCATTGATTATGTTAATTTCCAATTCTATGCATATGACAAGGGTA CTAGTGTGGATCAGTTTATTGATTACTTCAACAAGCAAAGTGCAAATTACAATGGTGGGAAGGTGTTGGTGAGTTTCATT AGTGATGGGAGTGGTGGGTTGTCACCAAATGATGGATTCTTCACGGCATGTCATAGGCTGAAGAGTCAGCAAAAGCTTGA TGGTATCTTTGTGTGGTCTGCTGATGATTCTATGGGAAATGGTTTCCCCTATGAGAAGCAATCACAAGCCCTTTTGGCTA TACCGTAGTAAATTAAGAAAAAAAGTATATGTCAAGAACAATTATAATGTATTGATACTTATCAGACTTGATATTATGTA AATATATATATATACATACATGAATTTCATGCGCATTTTAATTTGGCTTATGATGTGTTTGTGAATTGAGTTTTGAATTA TGAAAATGTCC
CDS sequence (LotjaGi2g1v0366100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTCCTATTCCAAACCTTTGCTTTACCCTTTTCTTCTTCTTATTTCTTGCAACAACCAACGCAAGCTTATTCCG AGAATACATAGGAGCAGAGAACAATGTCAAATTTTCAGATGTTCCTATTAACCAAGATGTCGAATTTCACTTCATTCTCT CCTTTGCTATTGACTATGACACATCATCATCTCCTTCTCCCACAAATGGAAAATTCAACGTTTTTTGGGAAACAGAAAAC CTAACCCCAACCCAAGTTTCTTCCATCAAGAGCAAGAACTCAAATGTCAAAGTAGCCATGAGTCTTGGAGGAGATAGTGT TGAAGGTGGCTCTGCTTACTTTGATCCATCTTCAGCTGATTCTTGGGTTTCTAACGCCGTTTCTTCGCTTACAAACATAA TCAAGGAGTACAACTTGGACGGAATCGACATTGACTATGAGCATTTCAAAACAGACCCTGAAACATTTGCTGATTGCATA GGGAGGGTAATCAAGACTCTTAAAGCCAATGGGGTTATCTCTTTTGCTTCAATTGCTCCATTTGATGATGATCAGGTTCA GAGTCATTACATGGCCTTGTGGAAGAGTTATGGGAACCTCATTGATTATGTTAATTTCCAATTCTATGCATATGACAAGG GTACTAGTGTGGATCAGTTTATTGATTACTTCAACAAGCAAAGTGCAAATTACAATGGTGGGAAGGTGTTGGTGAGTTTC ATTAGTGATGGGAGTGGTGGGTTGTCACCAAATGATGGATTCTTCACGGCATGTCATAGGCTGAAGAGTCAGCAAAAGCT TGATGGTATCTTTGTGTGGTCTGCTGATGATTCTATGGGAAATGGTTTCCCCTATGAGAAGCAATCACAAGCCCTTTTGG CTATACCGTAG
Protein sequence (LotjaGi2g1v0366100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPIPNLCFTLFFFLFLATTNASLFREYIGAENNVKFSDVPINQDVEFHFILSFAIDYDTSSSPSPTNGKFNVFWETEN LTPTQVSSIKSKNSNVKVAMSLGGDSVEGGSAYFDPSSADSWVSNAVSSLTNIIKEYNLDGIDIDYEHFKTDPETFADCI GRVIKTLKANGVISFASIAPFDDDQVQSHYMALWKSYGNLIDYVNFQFYAYDKGTSVDQFIDYFNKQSANYNGGKVLVSF ISDGSGGLSPNDGFFTACHRLKSQQKLDGIFVWSADDSMGNGFPYEKQSQALLAIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| PANTHER | 10 | 294 | 285 | 5.2E-147 | – | |
| PANTHER | 10 | 294 | 285 | 5.2E-147 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Gene3D | 23 | 296 | 274 | 1.6E-90 | – | |
| PRINTS | 23 | 36 | 14 | 1.0E-11 | ||
| Phobius | 24 | 296 | 273 | - | – | |
| CDD | 25 | 278 | 254 | 6.99806E-132 | – | |
| SUPERFAMILY | 25 | 288 | 264 | 1.48E-57 | ||
| Pfam | 50 | 213 | 164 | 3.4E-18 | ||
| PRINTS | 69 | 84 | 16 | 1.0E-11 | ||
| PRINTS | 86 | 104 | 19 | 1.0E-11 | ||
| ProSitePatterns | 139 | 147 | 9 | - | ||
| PRINTS | 256 | 275 | 20 | 1.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0366100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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