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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370100 |
| Transcript ID | LotjaGi2g1v0370100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40218|Q40218_LOTJA RAB8D; Found in the gene: LotjaGi2g1v0370100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86718185..86725935) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAACAAAGGTAGAGAGAGAGAGAGAGTTGAGTGACCCACCCACCAATCCACCATAGTCGGGGCAGCTCCAAAGTTGA AGGTTGTAAAACCATCCACATTGTCTCCTACTCCTACTGTTCTGTTATGCTTTGCTTACTCCTAAATTTCCATTATTATT ATTATTTTTTTCGAAAAACAAAAAACACAGAAAAAAAGCACCGGTTTTTTCTCTCTAAAACGTGCATGTTCCTTCACTTG TGAACTTCGGACGAGAAAAGATCATCCCTTTCTCTCCCATTTTCCCATTTCCGATCAAACCCTCTTTGCGTTTTCTCTTT CACAGAGGGAATCGTGTTCCCACCCATTTCAAAGTTTATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACC TCATAAAGCTTCTCTTGATCGGCGACAGTGGTAAACTACCCTTTTCTTCAAATTCATTCAAAATCGAAGAAAAATTCAAA CTTGTTATAATAATGATTGATGATAGTTTCATTAGGAATTTCTGAATTAGTTACCTTTTGGCAATTTTCCTCTTTTTTTC TATGATTTCTGAACTGGGATTTGTTTTAAATTGTTAAACTTTTGATCTTTTTCATGATCTAGTATGACCCATGTTTTGGA TCATTGTTTTTTTTTTTATTGCAATGAAGGATTTAAAAGCATTGACATTTGTAGGGATCAAAATGGAATGTTTGTGTTGT TGCTCTTGGGTTAAAACACACCTGGATTTACCTTAAATTAATTAACCCTTTTTGTCATTGTCTTATGTAGGTGTTGGAAA AAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCATCACAACTATAGGGTATGTTTTCACAGTTT AAGAGTAGAAAACTGCAGAATTTTGTTTTTAAGAAATTTCTCTAATGTCGCAAGGGATTCCTTCATGATGCAGTATTGAT TTTAAGATAAGGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCG TACAATTACAACTGGTATGGTTTATGATTTTCATTGGTGCTATTTGTTATTAATCTGTGTACTATTGCACGTGACAGACA GAAACACATTGCTTGGCAATTTGCATTTGGCTTATGGCACTTCCCGATGTGTAGGATTAAAAGGTTTTGAGTGAAAGTGG ATAATTTGTATAGAGATAAAGATGAGCATAAAGAAAATTTGATAAAAGAGAGACATGATAGAGAAAGGATGAGAAATTAT TATTCAGCACTTAGATCTGACATGCGAGAATATGTAGGTAGTTTATTGTTCAAGTTTGAAGATAATAATTGTAAACCTAT AGGACTAAGCCAAAAATTGAATCCCCAAAGTCATGCCCTGTGCCGATTGCTGAAGCTCAAGTAGTCTCTGTCAAATGATA AACAGTTAGTTGAATACGTTAATTTACTGTTATTAGTTAGTTACTTAGTTATAATGGTTAGTTATTTAGTTATGCTAGGT AGTTAAGTTTACAGTTGTAACATATGGCCTTCTCTTCTTGTGAACTTTGTATATAAGGCTGTTAGTTCATTCAATCAATG AGAATTTGATTTTCTTCTTGGCAAGATCATAATATGGTATCCAAGGCTACTCTGGATCCATTTAATAAGCTACCCATAAA TGGACTATCTGCATATGTCCAGTTTTACAAACTTTACACTTCAGATGTACAGCCCTGGGCGTAAGCGGACCCCGCATTGA CTAGAGATATGACTAAATAAATCCCTATATAGGGTAGAACAATTCTCACCCATCAACTAGCTTTTGAAGTAGAGTTAGGC TTAGCCCGAATTCTAGAATCCGCTTCTTGTTTTGATCTCCATTGCTTCCACTTCCAAGAACTAGCCATGTCAAAATATAG GGGAAGAAGTTTCTAGAAGCAAGGAGCATCTTCCATGTATATTTTTTATTTGATTTAGAGATTGAATGTTATTGATGTAA AAATTCCAGCACTTGTAAGACATGTAAGATAAATATTCCTTTATTATTGACATGTCATGAGTTTTCCAGATATAGCAGTC CTTTACTATGTATGTACCATTGCTTCATTCACACTAATCTAAAATTCCAGTATACAAAAATTTGTAGAAGTGAGAGTATT TGTCATCTTAGTTATGTTGTGCTAAATATCCTTTCCTGAAATCTATGTTTTTTGCAGCTTACTATCGTGGTGCTATGGGC ATACTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAGTAAATTTCCTGCTGTTTCTTGAGTTTGAAATTTACA GATCTGCACAGAACTCCTAACTTTAAAAGGTTTTCCCATCTCAATATTAATCCAACTTCTGCTAATTTCAGATATCAGGA ATTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATGAA AGCAAAAGGGTATGGAAATTTTGTTGTTAATGTTTGATAAAACCCCCAGCTTTATGTTTTTCCCCCAGCCACCCTCTCTT TTTGAGTGGGGTTACAGCTTACAAGAGCAAGTCAAAGGATCTTCCAAACACCAATTTGATTTTGCATCAGATTTACAAAA CTAAAAGCAAAAGGGCTTGAAAATTCACCATTGCAGTTTCCAAATGTACTTCCATTATTGTGATGCAAGTTTTCCTGATG CTTGAATTACTTCATTAAGGATGTGTTAGAGAAACTGCGTTACTGTAAGTGAGTAAAACATTTCTGGTTGTGGTTTGGGA AGGTTTGAAGGATGGTTAAGTTCTGGTTTTATGACATCAATTGGCTTAGTAACATCTAGGAACTTCCCCTCTCTTATATA TGCATGTTAGATTTGAGATGTTTTTGTGACTGCTATACCATTGCCTTCTTTTTAGGCCGTGCCAACATCTAAAGGTCAAG CACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTGTAAGTGATTTATAATTGGGAATGTGGAAACTCGTCAAACTT CTAAGTTATTATGCTTATGAAAAATACTCTATTGCAGAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCA TTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGATCACAAGGCAGAGGTACTTGAACATCTTTTCACTAGTTTAATA TGTTAGTACTTCATGGTTCCTCAGCCCAAGGTATGGGTAAAATGCTCAGGAGAAAAATTTCCCTGAACGAAATAGTATTC AAATGTGATTTTTGATCCTATAAAAAGTTTACACTACTCTTCCTTAGCGATGGGTAAATGTTGCTTAATGTGCTAAATTT TCGCCCCTTACCCATTTTTTTCGGCTTCATCCCTTCTCAGCACAAAAGCCTCTTCTCTCTTTCTTCCCTCTCTCACAAAT CGCATGTCTTGTGATGTTTTTATTGCAGCCAACAACACTCAAAATCAACCAAGACTCTGCAGCAGGGGCTGGGGAGGCTG CTAATAAATCGTCTTGTTGTGGTTGAGATCACATTTTACAGATTGGAAGCAACATTATTGTTCAAGAACAAGAAGTAAAG AAGAAATTACTTGTATGATGTTCATGATGCTAAGTGCTTAACGGTTAACGGTTTTAATGTGTCATTCCTTATGGATTTTG CGTTTGATAAGTAGTTTCTGACTTTTCAAGAAGTGTATTGAATCAAAAACTAGATCTGATTGTGGTTAATGCATGTCTAA CTTTTACCAGTTTGATTAAAATACACATTTTGAATTTGTCCTTCACATCGGGCAAAGCTGTGAATTGCACAGTTCATTGC ATTACAGGATGTATACTTATTTCCTTTAAGGTAAATTTGATATAAACACTTAAGCTTAGTGAAAAGAAAAATCAAGAATC AACATAGAATCAAGAAGCAATTGAATCCATGGATGTCAAAACATTGCTATTCATCCTTTTGTAGTTTACCACTTTACCTT GTATGTATTATGCTGCTTCTAATATCTACAATATGTTTGAATGAACTTCTTTTGCCTCAATCAATTTTAGTACTTAAAAC TATTCACAAAAGCTTCTCACCATAATTGATTTTAACTTCATAATCAATTGTAGAAAAAATTTAAACATGCAGTTTATACA GGCTACTGTAGGCTGTAGCTTGTAATTTGTTTCGGATTTTCGCCCTCAAGTTAATAAAAAAACAATACTTATAAATTCGT CACATATTCATTAGAATTAGAAATGTTCTCAAGAATGAAAGATCTCATGAATGTTCATCATGACTCATTACTTTTCTTCC CAGAAACAATATTGTGCTGCACCAACTCAGCCCAACAAACTTCACTTGTTCACGCAAAACGTACAAAAGCACAAGCAACC GGAAATTATTTGCCCTTCAAAGTAACTATCCATCTTCCTCTCTATAATCCACTGCCAAAAAAAAAAGGAACAATTGAAGT GCTCAAGTGAATTTACCTCGTATAATTGGACAAAAATCCAAATAGTTACATAGCACTTTACGAGCCCAATCAGTGTCCCA ATACTAACAACTCTTTGCACTCTTGCTCCTTCAACTACGCAATAACATTAGCTTCCTCGATAATGTACTAGATAATTTCT GTCCAAAGCAATTAATAACGTTGATCTGTACAAGAGCTACATAAAGCTCCAATAAACTAAGCAAGGCCACAAAGGTACAC AACGCACTGAGCCAGAAAAAGATATAGGGATCATACTGAAAACTGATACATCTTACTATGCACACTAGAATCTAACCGAA GTTACATTTTAACAAAAGTTTGGGACTTATAGGTTAAGTTCTTCCTTTCCATAAATGCGTCGAAGCTCACGTGTAGCTGC TTGAAATGATTCTGAAGAAAGTTGGCAGGAGGGGGAAAAAAGAGTAAGTCAATTACCAAATGATCCCAACAAGAAAAAAC TAGTTTATGCAGGGGCGAGTGTGTCAGTGTTAAGGTGGACAGGAAGGAATTTCTTTACCTTTCCAACTGTGAAATGCTTT CTGATTAATTGGTGCGCCAAAAATTGTTTGAATTGAATCAAACAACAAACTTTCAGGGGTACTCTTCAATTCCTGTACTA TTTGATAAATGGACTTCCCATTGTCAAAATAAACGTGATTGTTTGGATGTTTCGTTTTGCTACCAGCATGTCTCTCAAGC TCATAAGCATTCAGAACCTGAAAATGTATAGTATCAGGCAATAAGTAAGCTATCACAGATTTTAAGAAATTGAAAAATCT TATGAAGGAGTTTGACCGATGACGTACTAACCTTGGTATAGTTACATGACTGGCACCCACAAAGATAGCCGGAACCTTTT ATAATTGCACGAAGTTCCTTCAGCAATAAAGGAATATAACTTATTAAGCAGCACTTTAAATTTAAATAATTAACAACAAA GACCAAAACTTACCTCCCTTGCCACTGAGACGTACTTCACAGGAACGCCATCAAGCATCCCAGTTGATATCAAGCTTCTC ACATTAGAAGGGAAGCAGTTGGGAGCTTCTTTCTTTGCTGTTTTGAACTCTTGTTTATTCTTGGGAACAGTTTCAGACTT TGCTCTTGCTACCTGAGGAGTACTTGCAACTATATCAGAGTTTGATGCACCCAACTCTTTCTCATAGGCTGTTGTCGAAG AATGAACTGAAGATTGATTATATAATTGTTCATAGTCTGTAGCAGGCCTGCCCACAGAGATAATGTTCTGTTCATCTGGG AACCCACCAAAAGAAATTATGTTTGTGTTCTCTTTATTATAGGATTCGCCACTTGATATGACTACATCATCTCCTTTGCC AAAGGGGGCGCCAAATGATCTGACTTGGGCATCTCCTCTGCTGTAGGGGAATCCCATTAAAGTGATATTGCCATCCTTCT CAAAGACTTGCCCTATTGACGCTGACCTTGTATCAACTTGGCCATTATAGGTCTGATATAGATCCCCATTACTTTGCCTA TTATAATTATGCCTCTCTGGAGCCTGTACATCATCAGAATCCTTAATCTGACCTACTTTGACTCTTTTAAATCCACCAGA ATTTGTACATGCTTCAGAATCTTCAACAGAATGAGATATAGACAGGCCAAAAGATGCATCACCTCCATATGGATTGGTGA TCAACTTTGATTTCACATTAGAATCCTCAGCCGATACATATGAAGTATTCTTTTCAGGGATATTGTTAGACTTAGTTCCA GACCCAAATAATCGACCAACAAAATGGTTTTGGACTGAATGAAAATTGGGACTGTTCTGCCAGGGAGTCAAATTTTCATT TGAAAATCCTGAACTAGTTCTTTCACTTACATTTTCTACTGCTTGTTTCTTGTTTGGAAAAAGATCTACTTCAGCAGCAT TGACGAGCCATTGATGAGGTCGTTTTGGTTCAATTTTTGAAGGATTATCAAATACTGTCTCTCTATCATTAATGTGTCCC TTAACCATCAAAAATCCCTTGTTTTGTAAAGACTGCAGGAAAAAAAACAACTATGTTACACATATAATGCACATATTGCC TTATAGTTTATCTAATTACATGAAGCCTATCATGTCCTTTATGATATGAACTTGGTCCTTCAAAGTAAAGGCAAAGAGTC CACTTCAGAAGAAAAAGCAAATGGTATGAACTATCAGTCAGAAAATCAAGGGATTGAAATTGAGTTCTAAAAAATACATT GTTGTGTTCTAAATGTGCATATATTTTATCAACCATTGCTTCTCTCATCCTTGGTTGAGACTTGAGCCCCCTCAATTTAA TCCTCACGATATAGATTTTTCCGTGTGACGTGCCCCATGTCATTTGTGTATACCTTATACTTCATACACCTCAAATCCTC AAAACCCCCTCTCCAAAAGGGCAAGGAAGCATCATAATGATTCCAATTTCCAAACAAACACACACACACAACAGCACCAA GCAACATTTACTATCCAACTCGAACTTGATTAGACTTAACTCCTAAAAACTAACATAATGCAAGCTGAAAGAAAGAACAA ACAAGGCAGAATCTATTCAATCCAGATATAACTAATAACTACAAATACCATTTGCTTGAACTCTTGCATGTGAAAAATAT CCCTGAAAAATCCTGCAGCTGATTCTCAAGTAACAATTTATCTTAGTTTCCAAAGTGATTCAAAGCATTTCCTGCAACAA GCATGCACAGTTCACACACATCCTTCAAGATCAACAAAGAAACAAAGTAAAAACAAATCCAATAAAATTAAAAAAAAATT AATTAAGAAGAATATACAATGCTCAATACCTATCAAACAAAAGGTATTTACTATTTACCAAAAAAATTCAAAGAAAAAAT TAAACAATTTCCAACATTCAAGCTCAGGAATTGCGTTATTGCGTTACCTAGGCAAAGGGTGAAATCACAATACTGATAGT AGCAATTGAGCTTCGGGAAGGTACGGCGATCGGTATAATCAGAGATAGCCGGAACCCTAATCGGAGAATCTTTCCGGCGG TGGTGAACGCCGAACGGTTTTCAAAGAGAGGAGAGATTCATATGATAGGGTAAGGTGCGTGAGGAGAGGAGCACTCGATC TTTTTCTCGTCCAGGGAATGTAGGATTGGATGAACCTCGATTGAGCTTAATTCAATGTTGGGCTATTTGATGATGGACAC GTGTAAGTAGGAAATCAATCTGGAACGTTGATTGGGCGGAGGAGCAACTACAACGATTTGGCAAAGTTTTC
CDS sequence (LotjaGi2g1v0370100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGGTGTTGG AAAAAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCATCACAACTATAGGTATTGATTTTAAGA TAAGGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATT ACAACTGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAG GAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATG AAAGCAAAAGGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCA AAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGATCACAA GGCAGAGCCAACAACACTCAAAATCAACCAAGACTCTGCAGCAGGGGCTGGGGAGGCTGCTAATAAATCGTCTTGTTGTG GTTGA
Protein sequence (LotjaGi2g1v0370100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTI TTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA KTNLNVEEVFFSIARDIKQRLADTDHKAEPTTLKINQDSAAGAGEAANKSSCCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 181 | 181 | 0.0033 | – | |
| PANTHER | 6 | 213 | 208 | 1.4E-126 | – | |
| PANTHER | 6 | 213 | 208 | 1.4E-126 | – | |
| Gene3D | 9 | 213 | 205 | 7.3E-73 | – | |
| SUPERFAMILY | 11 | 184 | 174 | 8.36E-64 | ||
| ProSiteProfiles | 11 | 213 | 203 | 38.101 | – | |
| CDD | 13 | 180 | 168 | 3.37931E-121 | – | |
| TIGRFAM | 14 | 170 | 157 | 2.5E-31 | ||
| PRINTS | 16 | 37 | 22 | 7.3E-47 | – | |
| SMART | 16 | 180 | 165 | 7.9E-107 | – | |
| Pfam | 17 | 178 | 162 | 2.1E-66 | ||
| SMART | 17 | 180 | 164 | 1.1E-35 | – | |
| SMART | 18 | 180 | 163 | 4.2E-14 | – | |
| SMART | 21 | 212 | 192 | 1.0E-6 | – | |
| PRINTS | 39 | 55 | 17 | 7.3E-47 | – | |
| PRINTS | 57 | 79 | 23 | 7.3E-47 | – | |
| PRINTS | 119 | 132 | 14 | 7.3E-47 | – | |
| PRINTS | 155 | 177 | 23 | 7.3E-47 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0370100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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