Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370100 |
| Transcript ID | LotjaGi2g1v0370100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3T5B5|I3T5B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86722633..86725578) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGGTAAACT ACCCTTTTCTTCAAATTCATTCAAAATCGAAGAAAAATTCAAACTTGTTATAATAATGATTGATGATAGTTTCATTAGGA ATTTCTGAATTAGTTACCTTTTGGCAATTTTCCTCTTTTTTTCTATGATTTCTGAACTGGGATTTGTTTTAAATTGTTAA ACTTTTGATCTTTTTCATGATCTAGTATGACCCATGTTTTGGATCATTGTTTTTTTTTTTATTGCAATGAAGGATTTAAA AGCATTGACATTTGTAGGGATCAAAATGGAATGTTTGTGTTGTTGCTCTTGGGTTAAAACACACCTGGATTTACCTTAAA TTAATTAACCCTTTTTGTCATTGTCTTATGTAGGTGTTGGAAAAAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTC ACTACTAGTTTCATCACAACTATAGGGTATGTTTTCACAGTTTAAGAGTAGAAAACTGCAGAATTTTGTTTTTAAGAAAT TTCTCTAATGTCGCAAGGGATTCCTTCATGATGCAGTATTGATTTTAAGATAAGGACCATTGAGCTTGATGGCAAACGGG TCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACAACTGGTATGGTTTATGATTTTCATTGG TGCTATTTGTTATTAATCTGTGTACTATTGCACGTGACAGACAGAAACACATTGCTTGGCAATTTGCATTTGGCTTATGG CACTTCCCGATGTGTAGGATTAAAAGGTTTTGAGTGAAAGTGGATAATTTGTATAGAGATAAAGATGAGCATAAAGAAAA TTTGATAAAAGAGAGACATGATAGAGAAAGGATGAGAAATTATTATTCAGCACTTAGATCTGACATGCGAGAATATGTAG GTAGTTTATTGTTCAAGTTTGAAGATAATAATTGTAAACCTATAGGACTAAGCCAAAAATTGAATCCCCAAAGTCATGCC CTGTGCCGATTGCTGAAGCTCAAGTAGTCTCTGTCAAATGATAAACAGTTAGTTGAATACGTTAATTTACTGTTATTAGT TAGTTACTTAGTTATAATGGTTAGTTATTTAGTTATGCTAGGTAGTTAAGTTTACAGTTGTAACATATGGCCTTCTCTTC TTGTGAACTTTGTATATAAGGCTGTTAGTTCATTCAATCAATGAGAATTTGATTTTCTTCTTGGCAAGATCATAATATGG TATCCAAGGCTACTCTGGATCCATTTAATAAGCTACCCATAAATGGACTATCTGCATATGTCCAGTTTTACAAACTTTAC ACTTCAGATGTACAGCCCTGGGCGTAAGCGGACCCCGCATTGACTAGAGATATGACTAAATAAATCCCTATATAGGGTAG AACAATTCTCACCCATCAACTAGCTTTTGAAGTAGAGTTAGGCTTAGCCCGAATTCTAGAATCCGCTTCTTGTTTTGATC TCCATTGCTTCCACTTCCAAGAACTAGCCATGTCAAAATATAGGGGAAGAAGTTTCTAGAAGCAAGGAGCATCTTCCATG TATATTTTTTATTTGATTTAGAGATTGAATGTTATTGATGTAAAAATTCCAGCACTTGTAAGACATGTAAGATAAATATT CCTTTATTATTGACATGTCATGAGTTTTCCAGATATAGCAGTCCTTTACTATGTATGTACCATTGCTTCATTCACACTAA TCTAAAATTCCAGTATACAAAAATTTGTAGAAGTGAGAGTATTTGTCATCTTAGTTATGTTGTGCTAAATATCCTTTCCT GAAATCTATGTTTTTTGCAGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCAT TTAACAGTAAATTTCCTGCTGTTTCTTGAGTTTGAAATTTACAGATCTGCACAGAACTCCTAACTTTAAAAGGTTTTCCC ATCTCAATATTAATCCAACTTCTGCTAATTTCAGATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAA TGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATGAAAGCAAAAGGGTATGGAAATTTTGTTGTTAATGTTTGA TAAAACCCCCAGCTTTATGTTTTTCCCCCAGCCACCCTCTCTTTTTGAGTGGGGTTACAGCTTACAAGAGCAAGTCAAAG GATCTTCCAAACACCAATTTGATTTTGCATCAGATTTACAAAACTAAAAGCAAAAGGGCTTGAAAATTCACCATTGCAGT TTCCAAATGTACTTCCATTATTGTGATGCAAGTTTTCCTGATGCTTGAATTACTTCATTAAGGATGTGTTAGAGAAACTG CGTTACTGTAAGTGAGTAAAACATTTCTGGTTGTGGTTTGGGAAGGTTTGAAGGATGGTTAAGTTCTGGTTTTATGACAT CAATTGGCTTAGTAACATCTAGGAACTTCCCCTCTCTTATATATGCATGTTAGATTTGAGATGTTTTTGTGACTGCTATA CCATTGCCTTCTTTTTAGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAAC TGTAAGTGATTTATAATTGGGAATGTGGAAACTCGTCAAACTTCTAAGTTATTATGCTTATGAAAAATACTCTATTGCAG AGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGA TCACAAGGCAGAGGTACTTGAACATCTTTTCACTAGTTTAATATGTTAGTACTTCATGGTTCCTCAGCCCAAGGTATGGG TAAAATGCTCAGGAGAAAAATTTCCCTGAACGAAATAGTATTCAAATGTGATTTTTGATCCTATAA
CDS sequence (LotjaGi2g1v0370100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGTTGGAAA AAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCATCACAACTATAGGTATTGATTTTAAGATAA GGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACA ACTGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAA TTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATGAAA GCAAAAGGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAG ACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGATCACAAGGC AGAGCCCAAGGTATGGGTAAAATGCTCAGGAGAAAAATTTCCCTGA
Protein sequence (LotjaGi2g1v0370100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPARARADYDYLIKLLLIGDSVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTIT TAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK TNLNVEEVFFSIARDIKQRLADTDHKAEPKVWVKCSGEKFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 180 | 180 | 0.0049 | – | |
| PANTHER | 6 | 191 | 186 | 1.1E-121 | – | |
| PANTHER | 6 | 191 | 186 | 1.1E-121 | – | |
| Gene3D | 9 | 196 | 188 | 3.8E-68 | – | |
| ProSiteProfiles | 11 | 201 | 191 | 35.432 | – | |
| SUPERFAMILY | 11 | 188 | 178 | 7.58E-60 | ||
| CDD | 13 | 179 | 167 | 2.27544E-118 | – | |
| TIGRFAM | 14 | 169 | 156 | 5.1E-29 | ||
| PRINTS | 15 | 36 | 22 | 7.4E-39 | – | |
| SMART | 16 | 179 | 164 | 2.6E-102 | – | |
| SMART | 17 | 179 | 163 | 1.5E-31 | – | |
| Pfam | 17 | 177 | 161 | 6.9E-64 | ||
| SMART | 18 | 179 | 162 | 3.7E-13 | – | |
| SMART | 21 | 200 | 180 | 1.6E-4 | – | |
| PRINTS | 38 | 54 | 17 | 7.4E-39 | – | |
| PRINTS | 56 | 78 | 23 | 7.4E-39 | – | |
| PRINTS | 118 | 131 | 14 | 7.4E-39 | – | |
| PRINTS | 154 | 176 | 23 | 7.4E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0370100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…