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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0370100 |
Transcript ID | LotjaGi2g1v0370100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3T5B5|I3T5B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86722641..86725645) extracted from Lotus japonicus Gifu genome v1.2.
CCGATCAAACCCTCTTTGCGTTTTCTCTTTCACAGAGGGAATCGTGTTCCCACCCATTTCAAAGTTTATGGCGGCTCCAC CAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGGTAAACTACCCTTTTCTTCA AATTCATTCAAAATCGAAGAAAAATTCAAACTTGTTATAATAATGATTGATGATAGTTTCATTAGGAATTTCTGAATTAG TTACCTTTTGGCAATTTTCCTCTTTTTTTCTATGATTTCTGAACTGGGATTTGTTTTAAATTGTTAAACTTTTGATCTTT TTCATGATCTAGTATGACCCATGTTTTGGATCATTGTTTTTTTTTTTATTGCAATGAAGGATTTAAAAGCATTGACATTT GTAGGGATCAAAATGGAATGTTTGTGTTGTTGCTCTTGGGTTAAAACACACCTGGATTTACCTTAAATTAATTAACCCTT TTTGTCATTGTCTTATGTAGGTGTTGGAAAAAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCA TCACAACTATAGGGTATGTTTTCACAGTTTAAGAGTAGAAAACTGCAGAATTTTGTTTTTAAGAAATTTCTCTAATGTCG CAAGGGATTCCTTCATGATGCAGTATTGATTTTAAGATAAGGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAAT TTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACAACTGGTATGGTTTATGATTTTCATTGGTGCTATTTGTTAT TAATCTGTGTACTATTGCACGTGACAGACAGAAACACATTGCTTGGCAATTTGCATTTGGCTTATGGCACTTCCCGATGT GTAGGATTAAAAGGTTTTGAGTGAAAGTGGATAATTTGTATAGAGATAAAGATGAGCATAAAGAAAATTTGATAAAAGAG AGACATGATAGAGAAAGGATGAGAAATTATTATTCAGCACTTAGATCTGACATGCGAGAATATGTAGGTAGTTTATTGTT CAAGTTTGAAGATAATAATTGTAAACCTATAGGACTAAGCCAAAAATTGAATCCCCAAAGTCATGCCCTGTGCCGATTGC TGAAGCTCAAGTAGTCTCTGTCAAATGATAAACAGTTAGTTGAATACGTTAATTTACTGTTATTAGTTAGTTACTTAGTT ATAATGGTTAGTTATTTAGTTATGCTAGGTAGTTAAGTTTACAGTTGTAACATATGGCCTTCTCTTCTTGTGAACTTTGT ATATAAGGCTGTTAGTTCATTCAATCAATGAGAATTTGATTTTCTTCTTGGCAAGATCATAATATGGTATCCAAGGCTAC TCTGGATCCATTTAATAAGCTACCCATAAATGGACTATCTGCATATGTCCAGTTTTACAAACTTTACACTTCAGATGTAC AGCCCTGGGCGTAAGCGGACCCCGCATTGACTAGAGATATGACTAAATAAATCCCTATATAGGGTAGAACAATTCTCACC CATCAACTAGCTTTTGAAGTAGAGTTAGGCTTAGCCCGAATTCTAGAATCCGCTTCTTGTTTTGATCTCCATTGCTTCCA CTTCCAAGAACTAGCCATGTCAAAATATAGGGGAAGAAGTTTCTAGAAGCAAGGAGCATCTTCCATGTATATTTTTTATT TGATTTAGAGATTGAATGTTATTGATGTAAAAATTCCAGCACTTGTAAGACATGTAAGATAAATATTCCTTTATTATTGA CATGTCATGAGTTTTCCAGATATAGCAGTCCTTTACTATGTATGTACCATTGCTTCATTCACACTAATCTAAAATTCCAG TATACAAAAATTTGTAGAAGTGAGAGTATTTGTCATCTTAGTTATGTTGTGCTAAATATCCTTTCCTGAAATCTATGTTT TTTGCAGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAGTAAATT TCCTGCTGTTTCTTGAGTTTGAAATTTACAGATCTGCACAGAACTCCTAACTTTAAAAGGTTTTCCCATCTCAATATTAA TCCAACTTCTGCTAATTTCAGATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATA CTGGTCGGGAACAAAGCTGACATGGATGAAAGCAAAAGGGTATGGAAATTTTGTTGTTAATGTTTGATAAAACCCCCAGC TTTATGTTTTTCCCCCAGCCACCCTCTCTTTTTGAGTGGGGTTACAGCTTACAAGAGCAAGTCAAAGGATCTTCCAAACA CCAATTTGATTTTGCATCAGATTTACAAAACTAAAAGCAAAAGGGCTTGAAAATTCACCATTGCAGTTTCCAAATGTACT TCCATTATTGTGATGCAAGTTTTCCTGATGCTTGAATTACTTCATTAAGGATGTGTTAGAGAAACTGCGTTACTGTAAGT GAGTAAAACATTTCTGGTTGTGGTTTGGGAAGGTTTGAAGGATGGTTAAGTTCTGGTTTTATGACATCAATTGGCTTAGT AACATCTAGGAACTTCCCCTCTCTTATATATGCATGTTAGATTTGAGATGTTTTTGTGACTGCTATACCATTGCCTTCTT TTTAGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTGTAAGTGATTTA TAATTGGGAATGTGGAAACTCGTCAAACTTCTAAGTTATTATGCTTATGAAAAATACTCTATTGCAGAGTGCAAAGACAA ATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGATCACAAGGCAGAG GTACTTGAACATCTTTTCACTAGTTTAATATGTTAGTACTTCATGGTTCCTCAGCCCAAGGTATGGGTAAAATGCTCAGG AGAAAAATTTCCCTGAACGAAATAGTATTCAAATGTGATTTTTGA
CDS sequence (LotjaGi2g1v0370100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGTTGGAAA AAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCATCACAACTATAGGTATTGATTTTAAGATAA GGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACA ACTGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAA TTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATGAAA GCAAAAGGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAG ACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGATCACAAGGC AGAGCCCAAGGTATGGGTAAAATGCTCAGGAGAAAAATTTCCCTGA
Protein sequence (LotjaGi2g1v0370100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPARARADYDYLIKLLLIGDSVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTIT TAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK TNLNVEEVFFSIARDIKQRLADTDHKAEPKVWVKCSGEKFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 180 | 180 | 0.0049 | – | |
PANTHER | 6 | 191 | 186 | 1.1E-121 | – | |
PANTHER | 6 | 191 | 186 | 1.1E-121 | – | |
Gene3D | 9 | 196 | 188 | 3.8E-68 | – | |
ProSiteProfiles | 11 | 201 | 191 | 35.432 | – | |
SUPERFAMILY | 11 | 188 | 178 | 7.58E-60 | ||
CDD | 13 | 179 | 167 | 2.27544E-118 | – | |
TIGRFAM | 14 | 169 | 156 | 5.1E-29 | ||
PRINTS | 15 | 36 | 22 | 7.4E-39 | – | |
SMART | 16 | 179 | 164 | 2.6E-102 | – | |
SMART | 17 | 179 | 163 | 1.5E-31 | – | |
Pfam | 17 | 177 | 161 | 6.9E-64 | ||
SMART | 18 | 179 | 162 | 3.7E-13 | – | |
SMART | 21 | 200 | 180 | 1.6E-4 | – | |
PRINTS | 38 | 54 | 17 | 7.4E-39 | – | |
PRINTS | 56 | 78 | 23 | 7.4E-39 | – | |
PRINTS | 118 | 131 | 14 | 7.4E-39 | – | |
PRINTS | 154 | 176 | 23 | 7.4E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0370100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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