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LotjaGi2g1v0370100.4

Overview

Field Value
Gene ID LotjaGi2g1v0370100
Transcript ID LotjaGi2g1v0370100.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I1LK56|I1LK56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:86722653..86725578) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGGTAAACT ACCCTTTTCTTCAAATTCATTCAAAATCGAAGAAAAATTCAAACTTGTTATAATAATGATTGATGATAGTTTCATTAGGA ATTTCTGAATTAGTTACCTTTTGGCAATTTTCCTCTTTTTTTCTATGATTTCTGAACTGGGATTTGTTTTAAATTGTTAA ACTTTTGATCTTTTTCATGATCTAGTATGACCCATGTTTTGGATCATTGTTTTTTTTTTTATTGCAATGAAGGATTTAAA AGCATTGACATTTGTAGGGATCAAAATGGAATGTTTGTGTTGTTGCTCTTGGGTTAAAACACACCTGGATTTACCTTAAA TTAATTAACCCTTTTTGTCATTGTCTTATGTAGGTGTTGGAAAAAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTC ACTACTAGTTTCATCACAACTATAGGGTATGTTTTCACAGTTTAAGAGTAGAAAACTGCAGAATTTTGTTTTTAAGAAAT TTCTCTAATGTCGCAAGGGATTCCTTCATGATGCAGTATTGATTTTAAGATAAGGACCATTGAGCTTGATGGCAAACGGG TCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACAACTGGTATGGTTTATGATTTTCATTGG TGCTATTTGTTATTAATCTGTGTACTATTGCACGTGACAGACAGAAACACATTGCTTGGCAATTTGCATTTGGCTTATGG CACTTCCCGATGTGTAGGATTAAAAGGTTTTGAGTGAAAGTGGATAATTTGTATAGAGATAAAGATGAGCATAAAGAAAA TTTGATAAAAGAGAGACATGATAGAGAAAGGATGAGAAATTATTATTCAGCACTTAGATCTGACATGCGAGAATATGTAG GTAGTTTATTGTTCAAGTTTGAAGATAATAATTGTAAACCTATAGGACTAAGCCAAAAATTGAATCCCCAAAGTCATGCC CTGTGCCGATTGCTGAAGCTCAAGTAGTCTCTGTCAAATGATAAACAGTTAGTTGAATACGTTAATTTACTGTTATTAGT TAGTTACTTAGTTATAATGGTTAGTTATTTAGTTATGCTAGGTAGTTAAGTTTACAGTTGTAACATATGGCCTTCTCTTC TTGTGAACTTTGTATATAAGGCTGTTAGTTCATTCAATCAATGAGAATTTGATTTTCTTCTTGGCAAGATCATAATATGG TATCCAAGGCTACTCTGGATCCATTTAATAAGCTACCCATAAATGGACTATCTGCATATGTCCAGTTTTACAAACTTTAC ACTTCAGATGTACAGCCCTGGGCGTAAGCGGACCCCGCATTGACTAGAGATATGACTAAATAAATCCCTATATAGGGTAG AACAATTCTCACCCATCAACTAGCTTTTGAAGTAGAGTTAGGCTTAGCCCGAATTCTAGAATCCGCTTCTTGTTTTGATC TCCATTGCTTCCACTTCCAAGAACTAGCCATGTCAAAATATAGGGGAAGAAGTTTCTAGAAGCAAGGAGCATCTTCCATG TATATTTTTTATTTGATTTAGAGATTGAATGTTATTGATGTAAAAATTCCAGCACTTGTAAGACATGTAAGATAAATATT CCTTTATTATTGACATGTCATGAGTTTTCCAGATATAGCAGTCCTTTACTATGTATGTACCATTGCTTCATTCACACTAA TCTAAAATTCCAGTATACAAAAATTTGTAGAAGTGAGAGTATTTGTCATCTTAGTTATGTTGTGCTAAATATCCTTTCCT GAAATCTATGTTTTTTGCAGCTTACTATCGTGGTGCTATGGGCATACTGCTAGTCTATGATGTTACAGATGAAGCATCAT TTAACAGTAAATTTCCTGCTGTTTCTTGAGTTTGAAATTTACAGATCTGCACAGAACTCCTAACTTTAAAAGGTTTTCCC ATCTCAATATTAATCCAACTTCTGCTAATTTCAGATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAA TGTTAACAAAATACTGGTCGGGAACAAAGCTGACATGGATGAAAGCAAAAGGGTATGGAAATTTTGTTGTTAATGTTTGA TAAAACCCCCAGCTTTATGTTTTTCCCCCAGCCACCCTCTCTTTTTGAGTGGGGTTACAGCTTACAAGAGCAAGTCAAAG GATCTTCCAAACACCAATTTGATTTTGCATCAGATTTACAAAACTAAAAGCAAAAGGGCTTGAAAATTCACCATTGCAGT TTCCAAATGTACTTCCATTATTGTGATGCAAGTTTTCCTGATGCTTGAATTACTTCATTAAGGATGTGTTAGAGAAACTG CGTTACTGTAAGTGAGTAAAACATTTCTGGTTGTGGTTTGGGAAGGTTTGAAGGATGGTTAAGTTCTGGTTTTATGACAT CAATTGGCTTAGTAACATCTAGGAACTTCCCCTCTCTTATATATGCATGTTAGATTTGAGATGTTTTTGTGACTGCTATA CCATTGCCTTCTTTTTAGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAAC TGTAAGTGATTTATAATTGGGAATGTGGAAACTCGTCAAACTTCTAAGTTATTATGCTTATGAAAAATACTCTATTGCAG AGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGATACTGA TCACAAGGCAGAGGTACTTGAACATCTTTTCACTAGTTTAATATGTTAGTACTTCATGGTTCCTCAGCCCAAGGTATGGG TAAAATGCTCAGGAGAAAAATTTCCCTGAACGAAATAGTATTCAAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0370100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCTCCACCAGCAAGGGCTCGCGCCGATTATGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGTTGGAAA AAGTTGCCTCTTGTTGCGTTTCTCTGATGGCTCTTTCACTACTAGTTTCATCACAACTATAGGTATTGATTTTAAGATAA GGACCATTGAGCTTGATGGCAAACGGGTCAAGCTTCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGTACAATTACA ACTGATATCAGGAATTGGATTCGCAACATTGAGCAACATGCTTCAGATAATGTTAACAAAATACTGGTCGGGAACAAAGC TGACATGGATGAAAGCAAAAGGGCCGTGCCAACATCTAAAGGTCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTG AAACTAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATTGCAAGAGATATAAAACAAAGGCTTGCTGAT ACTGATCACAAGGCAGAGCCCAAGGTATGGGTAAAATGCTCAGGAGAAAAATTTCCCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0370100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAPPARARADYDYLIKLLLIGDSVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTIT TDIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD TDHKAEPKVWVKCSGEKFP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
2 81 80 6.2E-24 –
PANTHER
PTHR24073:SF968
6 81 76 1.9E-95 –
PANTHER
PTHR24073
6 81 76 1.9E-95 –
ProSiteProfiles
PS51419
11 179 169 23.146 –
SUPERFAMILY
SSF52540
11 166 156 4.91E-45
IPR027417
TIGRFAM
TIGR00231
14 80 67 1.7E-13
IPR005225
PRINTS
PR00449
15 36 22 9.9E-20 –
SMART
SM00175
16 157 142 7.9E-70 –
Pfam
PF00071
17 81 65 9.8E-24
IPR001806
SMART
SM00173
17 157 141 5.8E-15 –
SMART
SM00174
18 157 140 7.8E-10 –
PRINTS
PR00449
38 54 17 9.9E-20 –
PRINTS
PR00449
56 78 23 9.9E-20 –
PANTHER
PTHR24073:SF968
82 169 88 1.9E-95 –
Gene3D
G3DSA:3.40.50.300
82 174 93 1.5E-23 –
Pfam
PF00071
82 155 74 9.2E-21
IPR001806
PANTHER
PTHR24073
82 169 88 1.9E-95 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0370100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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