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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0371200 |
| Transcript ID | LotjaGi2g1v0371200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G53370.1 pectin methylesterase PCR fragment F; Swiss-Prot: sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61; TrEMBL-Plants: tr|G7I4A4|G7I4A4_MEDTR Pectinesterase; Found in the gene: LotjaGi2g1v0371200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86790909..86795263) extracted from Lotus japonicus Gifu genome v1.2.
GTCATTAGTTAATCCTCCCAACAAATATTTCTACACAAACATACATCACTCATTTTATACGTTTTATTACTCAATTACAA TGATAGGCATATAAAATAAAAACACATATGCAGATTAAGAATGAGACAATAGGCATAAAAAAACATCCCCACTGATCTAT TCTGAGCTGAGTGGGCAATGGGAGTAGTATCCAGCCAATTCATTCCTGCGATGTAGACTTCGCACCAACCTTCCATTTTT TACATCATTTTACTTCAAAAACTCACTCACTCACTCACCCTCTCACTCTCTCTCCACTATCCAATCCATAGCACCGTCCT TTATATGAAGCTTATTCTCTTCTTACTCATATTCAATACCAACAACTAACAAAACAACAACCTCTTAATTTCTCACTCAC TCTTATTTTCACAATCAATAATGGACGAGTACTTGGCAAGACTAGGACCCACAGACCCCGGCGGTTCCTCCCGCCGCTCC ACCGCTCCGCTTACCGGTTCAACAACGGTGGTTTCACCAAATTCAAGCAGTACTAAAAAGAAGCTCGTCATGCTTGCCGT TCTCGCTGCCATATTGATTGTCGCCTCCGTCGTCTCCGCCGTACTAGTCACTGTCATCCGCTCCCGCGGAGGCTCCTCCG CCGGCGAAAACTCAAACCTCCGCGGAAAGCCGACGCAGGCAATCTCCCGAACCTGCAGCAGGACACGATTCCCCACTCTC TGCATCAACTCTCTCCTCGACTTCCCTGGCTCCACCACAGCCACCGAGCAGGACCTCGTCCACATCTCCTTCAACATGAC CCACCACCACATCAGCAGGGCGCTCTACACCTCCTCCGGCCTCTCATTCCCCGCCTCCGCCGGAACCCGCGCCCGCGCCG CCTACGAAGATTGCCTTGAGCTCCTCGACGACTCCATGGACGCTCTCTCCCGCTCTCTCTCCTCCGTCGTCGCAGTCGCA CCTACCAACGATGAGAGAGACGGTGACGGATCCTCCACCACCGACGATGTGCTGACATGGCTGAGCGCCGCATTAACTAA CCAGGACACGTGTTTGGAAGGCATCGAAGACGCCAGCGGGAGCGTGAAGGACCACATGGTGGGTAACTTGAAGGACTTGT CCGAACTCGTGAGTAATTCTCTAGCTATATTCTCGGCGAGCGGGGGCGGCGATTTCTCCGAGGTACCCATACAGAACAAG AGAAGACGCTTATTCACTCATCTCGGGAACACTCAAATCTCAGGAAAGTTCCCGAGATGGGTGAATAAACGAGATAGAAG ATTGTTAAGTTTACCAATATCGGCGATACAAGTCGATATAATTGTGTCCAAAAGTGGTAACGGAACGGCCAAGACAATCG CCGAGGCGATCAAGAAGGCGCCGGAGCATAGCCGCCGCCGATTCATAATCTACGTGATGGCAGGAAGGTAAATAAATAAG TTTCTGACTCTTCTTTTGGTAATAACTTAAGTAAATATATACAACCTTTTTCATGAAAAAAGTGTACAATTTCCGAGATA ACGAACAATGTACTTTTTAATTATTTATTTGGTTGTTTTTATTTAACTGACAGCATAATTGAAGTGACGGTGGTTATATG ATGTGTACTACTCCCTCTGTTCCTATTTATAAGTCACAAAAAACTAATTCTCTTAGATTAAGAAAAATAGTTAGTAATAA TAAATTTGTAAAGGAAATGATTAGCTTTCCTAGACTACCCTTATTTACTTTCCTATGATTTTCTCTCTCCAAGTTAATAT TCCAAAAGTTCATCATCTCTTTCATATTAAATATGAGGGTGAATTTGGAAAGAATTATTTAATGCTTCCTAGATATTAGA AAGTGACTTATATTTAGGAATAAATTTTTTTCAAAAAATGTGACTTATAATAAGGAACGGAGGGAGTAATTAAGAAAAAG GAAACACGGTGGGTGATGAGTTATTATTGTCATGTAAAGGTTTTTCATTTCTTTCTGCATGCACTGTAATGATGTGAATT AGTATCAGTATTCTGTTTCGGTATAGTTTCTAATGAATCGTCGTTTATGTCGTTTAGGTGAAAAAGGAATGTTAGGATTG GTTACGCTAGGTGTTGAAATTGCTTATAGAATTAAAACTAGTAAAACTAATTTTTCACCGACTAGATGAAATTCATGTCT AATGCTGATTGATGTATGATTGCAATAGATACAGAATGTGACATGTCAATGTGCACTCACTTTTGGATATAATGGCATTT TTTTTAGGTATGAAGAGAATAACTTAAAGGTGGGGAAAAAGAAAACCAACCTTATGTTCATAGGGGATGGGAAGGGCAAA ACTGTCATCACAGGGAAGAAAAATGTTGTTGATGGGATGACCACTTTCCATACCGCATCCTTCGGTGAGTTTCTTTCCAC ATGTCACGTGTGCCAACTTGTTTCTTTAGAAATTCATTATTTTATGTCTTTATTGCACAAAATTCATCGTATGGTTCTAT TTTTTTTGTTAATTTAGCATTTTGGAAAATAAATAATGAAGAAAAACAGTGGACCAACACCATGTCCATGCATGATATTA GAACAGCGTAAGTTGCACATGGCCTGCAATCACATGATAGATATTACAACTATTAAGATTGTGATATGCATGTCTTCAAT TGATGCATTATTGTGCCGCATAATGCGCTTTACCAGCATTTTCTGTACTAACCTGGAACTCACGAAATCAAAAAGTACAA TATACTGAACTTTACCATGCACCTCAAGTCAACCCAAAAGCGGAAAAATTATAGTTTTCTAATTAATTTAACAAGATAAC TGCAGATTAAGCCATATACTTTTCTACAGACTCTAAATTCACTTCTTATGAACTATTTTATTTTATTATTTTTTGAGATA TAATTGACCAGAGAAAAATCATAGTAATTGGTTGTTGGAATTCTAAGGAAATTAAACCAGGCCCGAGCAGTCAACACAGT CTTAATTTCTAGTTAAATTATACTTCAATTAATTAATTAAGTGTGCCATCTCCTTACGCGTTCTCTGGCTTTGACAAAAC AAATGATCATTCCCTTCTTGACTTTTCATTTTCGTCATACTATAATATACTACTACTCAAATTAAAAATCCAATATAATT ACTCCTATAAGATGCGACTAAATCACGCAATATAAGGAGCCATAATAGTTATCAACAATACCATAAATATTCTTCATGTC CATGATTCGATTTAGCTAACACATGCATGATATTATTAATGGATGCAGCTGCAAGTGGTGCTGGCTTCATTGCACGAGAC ATCACGTTCGAGAACTATGCTGGACCGGCGAAGCACCAAGCGGTTGCGCTCCGTGTCGGAGCTGACCATGCAGTGGTATT CCGGTGCAACATTGTGGGGTACCAAGACTCATGCTATGTACACTCCAACCGTCAATTCTTCCGTGAATGTGACATTTATG GCACGGTGGACTTCATTTTCGGCAACGCCGCCGTGGTTTTCCAAAAATGCAACATTTACGCACGGAAGCCCATGGCCCAA CAAAAAAACACAATCACGGCCCAAAACAGAAAAGACCCAAATCAAAATACGGGTATTTCAATCCACAACTGTCGGATCCT ACCCGCCCCGGATCTCAACCCGGTAAAGGACCAGTTTCCCACATACCTAGGTCGTCCTTGGAAAACATACTCTAGAACGG TGTACATGTTATCCAACATGAGTGATCATGTGCATCCACGTGGATGGCTAGAGTGGAATGGAGACTTTGCTTTAGACACG TTGTATTATGGTGAGTACATGAATTATGGACCCGGTGCTGCAATCGGGCAACGGGTTAAATGGCCCGGGTACCGGATTAT TACTTCAACTGTTGAGGCTGATAGGTTCACGGTGGCCCAATTCATATCCGGATCCTCATGGTTACCGTCCACAGGAGTGG CCTATTTGGCCGGGTTATCCACATAAATTCCACTACTGCAAATATGCTAAGGGATATATGCTTTGATTGTCACAAAAGCA AACCACCCAATTGGGGAAATAGCTTCTAATTTTATAGTCTTGTTATTTTGATTTAATAGTGCCAAATTTGAGGCTAAATT TTTTTCTTACAAATGATGCTAATAATAAATATATATTGTAAACATGGCACTATATAATATAGCTGAATAGCTCTTGTCCT TGTACTTTTTACCCTCTCAAGCCAAAGCTTCAGTGTTTATTTATTTATTTATAAACGAGTATTTTAGGTGACTTGAGAAG GTTTTGTGTCATTTTCATTTAATTGAATAAAACAAAAGGAAAGCGTAGTCAATGAAGACATGAAACATGGCCTAAATAGT CTAGTCAAACATGTTAGCCTCACCATAAAACAAAC
CDS sequence (LotjaGi2g1v0371200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGTACTTGGCAAGACTAGGACCCACAGACCCCGGCGGTTCCTCCCGCCGCTCCACCGCTCCGCTTACCGGTTC AACAACGGTGGTTTCACCAAATTCAAGCAGTACTAAAAAGAAGCTCGTCATGCTTGCCGTTCTCGCTGCCATATTGATTG TCGCCTCCGTCGTCTCCGCCGTACTAGTCACTGTCATCCGCTCCCGCGGAGGCTCCTCCGCCGGCGAAAACTCAAACCTC CGCGGAAAGCCGACGCAGGCAATCTCCCGAACCTGCAGCAGGACACGATTCCCCACTCTCTGCATCAACTCTCTCCTCGA CTTCCCTGGCTCCACCACAGCCACCGAGCAGGACCTCGTCCACATCTCCTTCAACATGACCCACCACCACATCAGCAGGG CGCTCTACACCTCCTCCGGCCTCTCATTCCCCGCCTCCGCCGGAACCCGCGCCCGCGCCGCCTACGAAGATTGCCTTGAG CTCCTCGACGACTCCATGGACGCTCTCTCCCGCTCTCTCTCCTCCGTCGTCGCAGTCGCACCTACCAACGATGAGAGAGA CGGTGACGGATCCTCCACCACCGACGATGTGCTGACATGGCTGAGCGCCGCATTAACTAACCAGGACACGTGTTTGGAAG GCATCGAAGACGCCAGCGGGAGCGTGAAGGACCACATGGTGGGTAACTTGAAGGACTTGTCCGAACTCGTGAGTAATTCT CTAGCTATATTCTCGGCGAGCGGGGGCGGCGATTTCTCCGAGGTACCCATACAGAACAAGAGAAGACGCTTATTCACTCA TCTCGGGAACACTCAAATCTCAGGAAAGTTCCCGAGATGGGTGAATAAACGAGATAGAAGATTGTTAAGTTTACCAATAT CGGCGATACAAGTCGATATAATTGTGTCCAAAAGTGGTAACGGAACGGCCAAGACAATCGCCGAGGCGATCAAGAAGGCG CCGGAGCATAGCCGCCGCCGATTCATAATCTACGTGATGGCAGGAAGGTATGAAGAGAATAACTTAAAGGTGGGGAAAAA GAAAACCAACCTTATGTTCATAGGGGATGGGAAGGGCAAAACTGTCATCACAGGGAAGAAAAATGTTGTTGATGGGATGA CCACTTTCCATACCGCATCCTTCGCTGCAAGTGGTGCTGGCTTCATTGCACGAGACATCACGTTCGAGAACTATGCTGGA CCGGCGAAGCACCAAGCGGTTGCGCTCCGTGTCGGAGCTGACCATGCAGTGGTATTCCGGTGCAACATTGTGGGGTACCA AGACTCATGCTATGTACACTCCAACCGTCAATTCTTCCGTGAATGTGACATTTATGGCACGGTGGACTTCATTTTCGGCA ACGCCGCCGTGGTTTTCCAAAAATGCAACATTTACGCACGGAAGCCCATGGCCCAACAAAAAAACACAATCACGGCCCAA AACAGAAAAGACCCAAATCAAAATACGGGTATTTCAATCCACAACTGTCGGATCCTACCCGCCCCGGATCTCAACCCGGT AAAGGACCAGTTTCCCACATACCTAGGTCGTCCTTGGAAAACATACTCTAGAACGGTGTACATGTTATCCAACATGAGTG ATCATGTGCATCCACGTGGATGGCTAGAGTGGAATGGAGACTTTGCTTTAGACACGTTGTATTATGGTGAGTACATGAAT TATGGACCCGGTGCTGCAATCGGGCAACGGGTTAAATGGCCCGGGTACCGGATTATTACTTCAACTGTTGAGGCTGATAG GTTCACGGTGGCCCAATTCATATCCGGATCCTCATGGTTACCGTCCACAGGAGTGGCCTATTTGGCCGGGTTATCCACAT AA
Protein sequence (LotjaGi2g1v0371200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEYLARLGPTDPGGSSRRSTAPLTGSTTVVSPNSSSTKKKLVMLAVLAAILIVASVVSAVLVTVIRSRGGSSAGENSNL RGKPTQAISRTCSRTRFPTLCINSLLDFPGSTTATEQDLVHISFNMTHHHISRALYTSSGLSFPASAGTRARAAYEDCLE LLDDSMDALSRSLSSVVAVAPTNDERDGDGSSTTDDVLTWLSAALTNQDTCLEGIEDASGSVKDHMVGNLKDLSELVSNS LAIFSASGGGDFSEVPIQNKRRRLFTHLGNTQISGKFPRWVNKRDRRLLSLPISAIQVDIIVSKSGNGTAKTIAEAIKKA PEHSRRRFIIYVMAGRYEENNLKVGKKKTNLMFIGDGKGKTVITGKKNVVDGMTTFHTASFAASGAGFIARDITFENYAG PAKHQAVALRVGADHAVVFRCNIVGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQ NRKDPNQNTGISIHNCRILPAPDLNPVKDQFPTYLGRPWKTYSRTVYMLSNMSDHVHPRGWLEWNGDFALDTLYYGEYMN YGPGAAIGQRVKWPGYRIITSTVEADRFTVAQFISGSSWLPSTGVAYLAGLST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 41 | 41 | - | – | |
| MobiDBLite | 14 | 35 | 22 | - | – | |
| PANTHER | 26 | 612 | 587 | 0.0 | – | |
| PANTHER | 26 | 612 | 587 | 0.0 | – | |
| Phobius | 42 | 66 | 25 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 67 | 613 | 547 | - | – | |
| TIGRFAM | 76 | 244 | 169 | 9.2E-34 | ||
| SMART | 83 | 243 | 161 | 4.5E-43 | ||
| Gene3D | 85 | 247 | 163 | 3.1E-22 | ||
| SUPERFAMILY | 86 | 245 | 160 | 2.88E-32 | ||
| Pfam | 87 | 243 | 157 | 1.7E-30 | ||
| CDD | 92 | 246 | 155 | 2.05654E-47 | – | |
| Gene3D | 293 | 611 | 319 | 9.6E-129 | ||
| SUPERFAMILY | 294 | 610 | 317 | 8.9E-112 | ||
| Pfam | 299 | 596 | 298 | 3.8E-147 | ||
| ProSitePatterns | 444 | 453 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0371200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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