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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378800 |
| Transcript ID | LotjaGi2g1v0378800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G51320.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320; TrEMBL-Plants: tr|G7JXL5|G7JXL5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0378800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87566743..87569882) extracted from Lotus japonicus Gifu genome v1.2.
AGTACCTTAAATAATTTCAAAAAAAAAAAAGATAGTACCTTAAATGGAACTAATCCTTTTATTTAAAAATTAGGTTGAAA TTATTTTAAAATTAAGCCTAGATTAACGCCCAGTAATTTTACATTTGGACTTAAACACTAGGGTGTGCTCGCTCAGGAAA CTCAAACAGAGAGAGAGCATGTTCGTCAATGGCGATTAAGCGCCGGAGCTCATCACTTCGTCGAACACAACCTCCAAATG AATGGCCAGAGTCTCCACCCGTCAACTCCTTCCCTTCCGAACCACCCTTCATCCCCGCCCCACCACCACCACCACCGTCA CTCACACTCTCCCTAACACCACTCCTCCTCCTCCTTCTGAAACCGACGGAAAACCACCACCCTTCACCCGACACCACTTC CAAACGCTTCTTCAATCCTCTTGCCAAACCCCTCGCCACCTCCTTCAAATCCAAGCCCTTCTCATCACCACAACTCTTGC CCGTATACCCTTCTTGGCACGAACCCTTCTCAGCCGCGCTTCCAATCTATGCGGCGTCGATTTCACCCTTTTGATCTTCC GCTACTTCAACAATCCCTTGGATACTTTCTGCGTCAACACGGTGATAAGCGCTTATTGCAAAAGCCATGACCCCCACTTA GCTCAGGTTTTCTACTTTCGCTCTCTGAGGTTTCGCTTCTTTCCCAATAGCTACACCTTCGTGCCGCTCATTGGCTCTTG CGGTAACACGGGTTGCATTGTTTCTGGGCGGAAGTGTCACGCTCAGGTAATCAAGAATGGGTTTGACTCTGTGTTGCCGG TGCAGAATTCTTTGATTCATATGTATGCGGATTGTGGGGATGTTCAGGTTGCTAGGGTGCTCTTTGACAGCATGTTGGCC CGGGATTTGGCTTCGTGGAATTCAATGGTTGATGGGTATTTGGAGGCTGGTGACTTAAGTAGTGCACACGCACTGTTTGA TGTAATGCCTGATAAGAATTTGGTCACTTGGAATATTATGATTAGTGGGTTTTTGAAGGCGAGGAACCCTGGTTATGCGT TGAAGTTGTTCCGGGAAATGGGGAGTGTAGGATTGAAAGGCAATGCTACGACTATGGTATGTGTGGTCACGGCTTGTGGG AGGTCGGCTAGGCTGAAGGAAGGAAGATCAGTTCATGGGAGCATAATCAGGATGTTTTCGAGGTCAAGTTTGATTCTCGA TACGGCTTTGATAGATATGTATTGTAAATGCAGGAGGGTGGAGTTGGCGACTAGAGTGTTTGAAAGAATGACAAACCGGA ATTTGGTGTCGTGGAATGCAATGATCTTGGGGCATTGCATTCATGGGAGTCCTGAAGATGGACTGAGCCTGTTTGATGAA ATGGTTGGGATGGACAAGGTGAAAGGGGAAGTTGAGATTGATGAGAGTCCATGTGCAGATAGAGGTGTGGTAAGGTTACA ACCTGATGAAGTAACCTTCATTGGGATACTTTGTGCCTGTGCTAGGGCAGAGTTGTTGGCTGAGGGCAGGTCTTACTTCA AACAAATGACTGACGTATTTGGTTTGAAGCCCAATTTTGCTCATTTATGGTGCATGGCTAATCTGCTTGCAAATGCAGGG CTTGTTGATGAGGCAGAAAAGTGTCTGCGGAACATGGCAAAATTTGATGGGGATATGTCACGAGAGTCCGCAGAAAAGTG TCTGCGGAACATGGCTATTCTCCACAGAAAATGTCTTATGGCCTCAAAGGAGGGTAGAATTCGAACGTTACCTTCTAATT CACCTACAGACCCTCGAGCTCCTTCCTCCATAGTTAGCCTGGAATGCTCAGTTAAGTGATGGGCCACATTCACAGATCGT GTTTCTTTGTCGCGACCATTGCGTTGGGGACAAGTAGCTGTGTATCAAATAGGTTGGGTTACCTTCGGTTGATCTGATAT GAGAAAAGGAGAAGACATTCCGCTAGAGGGGCTGGCTAAGACATCGCTCACTGGGACTGCCTCTAGTTCAGACACATAGA TCTCACACTCAGACACGAGAGACTCTGGCTCAACAAGGAAGGCAGTCAACTTAGGCAAGAGAAGTTAGTGAAGCAGAAAA AGGATTTTTAGAAAAGCACCTCTCTGTATTCCCCTGCTCCACCACTCGTCACCGCTCTCAGCTTGAACTCTCGCCCTGAC TTCGCGTTTGATCCTCTCAGGCCCAACAACAAATCACAGTTACCGCAACCCCTTCACCACCACCACCACCCTCCCTCAAA GCCTTCTTCCCCTTGTTTCCCCATTAATCCACCTCCACCTTTCGACAACCACCTCCCCTTCACTTCCCCACTACCCTGTT TTGGAAGCAACAAGAGGTTCGCTGAACCTGCTGATTACGGCCTCGGGGACAGACGAAACAAGCGTATGATCAAGAATCGT GAGTCTGCTGCACGATCAAGGGCTAGAAAGCAGGTAAAGATTCCATTTACATACATTGTTTTGAACTTGAAAAATTCCAT GTTATTTTGTCATTTTCTGTAATGTGACTCTGTTTTTTTGTTGTTGTTTTCAGGCTTACACAAATGCGCTGAAGCATAAA GTTGATCATTTGCTGGAAGAAAATGCAAGGCTCAAAAGACAGCAACAAGAGGTAGTAACTGTAGTACTTTGTTTTTGTTA GTTAATTGTTACTTGTTATTACACATAAATAGCAATAGACAATGTTTCATTCTTTTGTGTAACTACTTGTTATTGCAGTT GTGGGAAGCTGCAGCGGGTCAACAAAAGAAGAAGAGCAACCTATACCGATCAGCTACAGCTCCATTTTGAGAAGTATCTA GTGGTGATACACCTGAAGATCTTACCCATTGTGTTTTGTTTGTGTGGTTGTGACTCATCCACCTTTTAGTTAATTAATCT AACTTCCTTTTTTAGATAGTGGTGCTTTGGGGATGAATAGATCTATATAAGGGAAGAATCGATAAAGTGCTTTTTTTTTG TATGGGGACCTAATGATAATTTTGATGGGTGCATTGTTTTCCTTGTTTAGATGTTGTGGATTCTTTGTCGTTTGGGGAAA GTGAATGAGTGAATGGGGTAGAAGATTGATAATGGTAGGGAAGGGAATAGTCAAGAGCAGTGTTATCAGACTCGGACCGG TGATCGACTCGGTCGAGGTA
CDS sequence (LotjaGi2g1v0378800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGAGTCTCCACCCGTCAACTCCTTCCCTTCCGAACCACCCTTCATCCCCGCCCCACCACCACCACCACCGTCAC TCACACTCTCCCTAACACCACTCCTCCTCCTCCTTCTGAAACCGACGGAAAACCACCACCCTTCACCCGACACCACTTCC AAACGCTTCTTCAATCCTCTTGCCAAACCCCTCGCCACCTCCTTCAAATCCAAGCCCTTCTCATCACCACAACTCTTGCC CGTATACCCTTCTTGGCACGAACCCTTCTCAGCCGCGCTTCCAATCTATGCGGCGTCGATTTCACCCTTTTGATCTTCCG CTACTTCAACAATCCCTTGGATACTTTCTGCGTCAACACGGTGATAAGCGCTTATTGCAAAAGCCATGACCCCCACTTAG CTCAGGTTTTCTACTTTCGCTCTCTGAGGTTTCGCTTCTTTCCCAATAGCTACACCTTCGTGCCGCTCATTGGCTCTTGC GGTAACACGGGTTGCATTGTTTCTGGGCGGAAGTGTCACGCTCAGGTAATCAAGAATGGGTTTGACTCTGTGTTGCCGGT GCAGAATTCTTTGATTCATATGTATGCGGATTGTGGGGATGTTCAGGTTGCTAGGGTGCTCTTTGACAGCATGTTGGCCC GGGATTTGGCTTCGTGGAATTCAATGGTTGATGGGTATTTGGAGGCTGGTGACTTAAGTAGTGCACACGCACTGTTTGAT GTAATGCCTGATAAGAATTTGGTCACTTGGAATATTATGATTAGTGGGTTTTTGAAGGCGAGGAACCCTGGTTATGCGTT GAAGTTGTTCCGGGAAATGGGGAGTGTAGGATTGAAAGGCAATGCTACGACTATGGTATGTGTGGTCACGGCTTGTGGGA GGTCGGCTAGGCTGAAGGAAGGAAGATCAGTTCATGGGAGCATAATCAGGATGTTTTCGAGGTCAAGTTTGATTCTCGAT ACGGCTTTGATAGATATGTATTGTAAATGCAGGAGGGTGGAGTTGGCGACTAGAGTGTTTGAAAGAATGACAAACCGGAA TTTGGTGTCGTGGAATGCAATGATCTTGGGGCATTGCATTCATGGGAGTCCTGAAGATGGACTGAGCCTGTTTGATGAAA TGGTTGGGATGGACAAGGTGAAAGGGGAAGTTGAGATTGATGAGAGTCCATGTGCAGATAGAGGTGTGGTAAGGTTACAA CCTGATGAAGTAACCTTCATTGGGATACTTTGTGCCTGTGCTAGGGCAGAGTTGTTGGCTGAGGGCAGGTCTTACTTCAA ACAAATGACTGACGTATTTGGTTTGAAGCCCAATTTTGCTCATTTATGGTGCATGGCTAATCTGCTTGCAAATGCAGGGC TTGTTGATGAGGCAGAAAAGTGTCTGCGGAACATGGCAAAATTTGATGGGGATATGTCACGAGAGTCCGCAGAAAAGTGT CTGCGGAACATGGCTATTCTCCACAGAAAATGTCTTATGGCCTCAAAGGAGGGTAGAATTCGAACGTTACCTTCTAATTC ACCTACAGACCCTCGAGCTCCTTCCTCCATAGTTAGCCTGGAATGCTCAGTTAAGTGA
Protein sequence (LotjaGi2g1v0378800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVSTRQLLPFRTTLHPRPTTTTTVTHTLPNTTPPPPSETDGKPPPFTRHHFQTLLQSSCQTPRHLLQIQALLITTTLA RIPFLARTLLSRASNLCGVDFTLLIFRYFNNPLDTFCVNTVISAYCKSHDPHLAQVFYFRSLRFRFFPNSYTFVPLIGSC GNTGCIVSGRKCHAQVIKNGFDSVLPVQNSLIHMYADCGDVQVARVLFDSMLARDLASWNSMVDGYLEAGDLSSAHALFD VMPDKNLVTWNIMISGFLKARNPGYALKLFREMGSVGLKGNATTMVCVVTACGRSARLKEGRSVHGSIIRMFSRSSLILD TALIDMYCKCRRVELATRVFERMTNRNLVSWNAMILGHCIHGSPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLQ PDEVTFIGILCACARAELLAEGRSYFKQMTDVFGLKPNFAHLWCMANLLANAGLVDEAEKCLRNMAKFDGDMSRESAEKC LRNMAILHRKCLMASKEGRIRTLPSNSPTDPRAPSSIVSLECSVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Gene3D | 69 | 184 | 116 | 1.6E-7 | ||
| PANTHER | 107 | 244 | 138 | 1.3E-66 | – | |
| ProSiteProfiles | 114 | 148 | 35 | 8.002 | ||
| Pfam | 117 | 138 | 22 | 0.57 | ||
| ProSiteProfiles | 149 | 183 | 35 | 6.632 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.686 | ||
| Gene3D | 185 | 312 | 128 | 1.9E-27 | ||
| TIGRFAM | 189 | 216 | 28 | 0.0024 | ||
| Pfam | 189 | 214 | 26 | 0.028 | ||
| ProSiteProfiles | 215 | 245 | 31 | 9.767 | ||
| TIGRFAM | 218 | 247 | 30 | 9.5E-5 | ||
| PANTHER | 235 | 307 | 73 | 1.3E-66 | – | |
| Pfam | 245 | 292 | 48 | 1.9E-9 | ||
| ProSiteProfiles | 246 | 280 | 35 | 10.907 | ||
| TIGRFAM | 248 | 281 | 34 | 5.3E-7 | ||
| ProSiteProfiles | 281 | 311 | 31 | 5.93 | ||
| PANTHER | 301 | 472 | 172 | 1.3E-66 | – | |
| Gene3D | 313 | 507 | 195 | 3.7E-25 | ||
| ProSiteProfiles | 316 | 346 | 31 | 8.232 | ||
| TIGRFAM | 321 | 348 | 28 | 1.5E-4 | ||
| Pfam | 321 | 347 | 27 | 2.1E-4 | ||
| ProSiteProfiles | 347 | 381 | 35 | 9.734 | ||
| Pfam | 349 | 376 | 28 | 8.6E-7 | ||
| TIGRFAM | 349 | 376 | 28 | 2.3E-5 | ||
| ProSiteProfiles | 402 | 437 | 36 | 6.851 | ||
| ProSiteProfiles | 438 | 472 | 35 | 5.821 | ||
| Pfam | 445 | 467 | 23 | 1.3 | ||
| MobiDBLite | 502 | 525 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0378800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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