Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0379000 |
| Transcript ID | LotjaGi2g1v0379000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G51320.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320; TrEMBL-Plants: tr|G7JXL5|G7JXL5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0379000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87579174..87581637) extracted from Lotus japonicus Gifu genome v1.2.
AGTACCTTAAATAATTTCAAAAAAAAAAAAGATAGTACCTTAAATGGAACTAATCCTTTTATTTAAAAATTAGGTTGAAA TTATTTTAAAATTAAGCCTAGATTAACGCCCAGTAATTTTACATTTGGACTTAAACACTAGGGTGTGCTCGCTCAGGAAA CTCAAACAGAGAGAGAGCATGTTCGTCAATGGCGATTAAGCGCCGGAGCTCATCACTTCGTCGAACACAACCTCCAAATG AATGGCCAGAGTCTCCACCCGTCAACTCCTTCCCTTCCGAACCACCCTTCATCCCCGCCCCACCACCACCACCACCGTCA CTCACACTCTCCCTAACACCACTCCTCCTCCTCCTTCTGAAACCGACGGAAAACCACCACCCTTCACCCGACACCACTTC CAAACGCTTCTTCAATCCTCTTGCCAAACCCCTCGCCACCTCCTTCAAATCCAAGCCCTTCTCATCACCACAACTCTTGC CCGTATACCCTTCTTGGCACGAACCCTTCTCAGCCGCGCTTCCAATCTATGCGGCGTCGATTTCACCCTTTTGATCTTCC GCTACTTCAACAATCCCTTGGATACTTTCTGCGTCAACACGGTGATAAGCGCTTATTGCAAAAGCCATGACCCCCACTTA GCTCAGGTTTTCTACTTTCGCTCTCTGAGGTTTCGCTTCTTTCCCAATAGCTACACCTTCGTGCCGCTCATTGGCTCTTG CGGTAACACGGGTTGCATTGTTTCTGGGCGGAAGTGTCACGCTCAGGTAATCAAGAATGGGTTTGACTCTGTGTTGCCGG TGCAGAATTCTTTGATTCATATGTATGCGGATTGTGGGGATGTTCAGGTTGCTAGGGTGCTCTTTGACAGCATGTTGGCC CGGGATTTGGCTTCGTGGAATTCAATGGTTGATGGGTATTTGGAGGCTGGTGACTTAAGTAGTGCACACGCACTGTTTGA TGTAATGCCTGATAAGAATTTGGTCACTTGGAATATTATGATTAGTGGGTTTTCGAAGGCGAGGAACCCTGGTTATGCGT TGAAGTTGTTCCGGGAAATGGGGAGTGTAGGATTGAAAGGCAATGCTACGACTATGGTATGTGTGGTCACGGCTTGTGGG AGGTCGGCTAGGCTGAAGGAAGGAAGATCAGTTCATGGGAGCATAATCAGGATGTTTTCGAGGTCAAGTTTGATTCTCGA TACGGCTTTGATAGATATGTATTGTAAATGCAGGAGGGTGGAGTTGGCGACTAGAGTGTTTGAAAGAATGACAAACCGGA ATTTGGTGTCGTGGAATGCAATGATCTTGGGGCATTGCATTCATGGGAGTCCTGAAGATGGACTGAGCCTGTTTGATGAA ATGGTTGGGATGGACAAGGTGAAAGGGGAAGTTGAGATTGATGAGAGTCCATGTGCAGATAGAGGTGTGGTAAGGTTACA ACCTGATGAAGTAACCTTCATTGGGATACTTTGTGCCTGTGCTAGGGCAGAGTTGTTGGCTGAGGGCAGGTCTTACTTCA AACAAATGACTGACGTATTTGGTTTGAAGCCCAATTTTGCTCATTTATGGTGCATGGCTAATCTGCTTGCAAATGCAGGG CTTGTTGATGAGGCAGAAAAGTGTCTGCGGAACATGGCAAAATTTGATGGGGATATGTCACGAGAGTCAATGCTATGGGC AAATTTGCTTGCTTTGTGTCGTTTCAGGAGAGATGTGTACTTGGGGGAACAATTTGCTAAACTTCTTGTCGACATGTATC CTAAGAACCTCGCCTGTTACCAGTTTCTGCTGATCATTTATGCCGTGGCTGCTCAATGGGAGAATGTTTCTACAGTGCAA AAATTGATGAAGGAAAGAAGATTAGGGATAATACCTGGAAGCAGTCTTGTGGACCTGAAATATATAGTTCACAATTTCAA AGTTTCCGAGAAACGACATGAAGGGATTGAAGCTGTAAACATGATGATGGATGAACTAGCTCGTAGATTCAGGATGCCAA GTGTTGATTCAGGTCAGTCATCAGTGTGCCATAAAGAGAATAATAGTAGCTGGATTAGTAGTAGTAGTGAAGACGAGGAT GGCTGATAAAACCTTAAACATAGGTTAAGAATTTAGTTCACATTTTTTTGTAAGCAGTCTTCATTTTTGTTGGTCAGCAA CCACCCCGTAACCTTGGAGTATCTGAGTTTTAATATAGGTGCAAGTTTTTCTTGGGTCAGGCATACGGATCAGAAATCCC ATTTTTTGTATTGAGTGATTAACTTAGAGTTGAGTTTAATGCAGCGTTTGGAAGTACTTACTCCAACTTATCTTATATAT ACTTATGCAAGTGTTTGGGTAAACTATTGAAAGTAGCTCATGACTTGCGTATAAATTGTTTTGAGCTTACCTTCACAAGC AGCTTATATTCTAACATGTAAGTTATTTTGAGTTCTTCTCAAACTTTATCAGATAAACAATAAC
CDS sequence (LotjaGi2g1v0379000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGAGTCTCCACCCGTCAACTCCTTCCCTTCCGAACCACCCTTCATCCCCGCCCCACCACCACCACCACCGTCAC TCACACTCTCCCTAACACCACTCCTCCTCCTCCTTCTGAAACCGACGGAAAACCACCACCCTTCACCCGACACCACTTCC AAACGCTTCTTCAATCCTCTTGCCAAACCCCTCGCCACCTCCTTCAAATCCAAGCCCTTCTCATCACCACAACTCTTGCC CGTATACCCTTCTTGGCACGAACCCTTCTCAGCCGCGCTTCCAATCTATGCGGCGTCGATTTCACCCTTTTGATCTTCCG CTACTTCAACAATCCCTTGGATACTTTCTGCGTCAACACGGTGATAAGCGCTTATTGCAAAAGCCATGACCCCCACTTAG CTCAGGTTTTCTACTTTCGCTCTCTGAGGTTTCGCTTCTTTCCCAATAGCTACACCTTCGTGCCGCTCATTGGCTCTTGC GGTAACACGGGTTGCATTGTTTCTGGGCGGAAGTGTCACGCTCAGGTAATCAAGAATGGGTTTGACTCTGTGTTGCCGGT GCAGAATTCTTTGATTCATATGTATGCGGATTGTGGGGATGTTCAGGTTGCTAGGGTGCTCTTTGACAGCATGTTGGCCC GGGATTTGGCTTCGTGGAATTCAATGGTTGATGGGTATTTGGAGGCTGGTGACTTAAGTAGTGCACACGCACTGTTTGAT GTAATGCCTGATAAGAATTTGGTCACTTGGAATATTATGATTAGTGGGTTTTCGAAGGCGAGGAACCCTGGTTATGCGTT GAAGTTGTTCCGGGAAATGGGGAGTGTAGGATTGAAAGGCAATGCTACGACTATGGTATGTGTGGTCACGGCTTGTGGGA GGTCGGCTAGGCTGAAGGAAGGAAGATCAGTTCATGGGAGCATAATCAGGATGTTTTCGAGGTCAAGTTTGATTCTCGAT ACGGCTTTGATAGATATGTATTGTAAATGCAGGAGGGTGGAGTTGGCGACTAGAGTGTTTGAAAGAATGACAAACCGGAA TTTGGTGTCGTGGAATGCAATGATCTTGGGGCATTGCATTCATGGGAGTCCTGAAGATGGACTGAGCCTGTTTGATGAAA TGGTTGGGATGGACAAGGTGAAAGGGGAAGTTGAGATTGATGAGAGTCCATGTGCAGATAGAGGTGTGGTAAGGTTACAA CCTGATGAAGTAACCTTCATTGGGATACTTTGTGCCTGTGCTAGGGCAGAGTTGTTGGCTGAGGGCAGGTCTTACTTCAA ACAAATGACTGACGTATTTGGTTTGAAGCCCAATTTTGCTCATTTATGGTGCATGGCTAATCTGCTTGCAAATGCAGGGC TTGTTGATGAGGCAGAAAAGTGTCTGCGGAACATGGCAAAATTTGATGGGGATATGTCACGAGAGTCAATGCTATGGGCA AATTTGCTTGCTTTGTGTCGTTTCAGGAGAGATGTGTACTTGGGGGAACAATTTGCTAAACTTCTTGTCGACATGTATCC TAAGAACCTCGCCTGTTACCAGTTTCTGCTGATCATTTATGCCGTGGCTGCTCAATGGGAGAATGTTTCTACAGTGCAAA AATTGATGAAGGAAAGAAGATTAGGGATAATACCTGGAAGCAGTCTTGTGGACCTGAAATATATAGTTCACAATTTCAAA GTTTCCGAGAAACGACATGAAGGGATTGAAGCTGTAAACATGATGATGGATGAACTAGCTCGTAGATTCAGGATGCCAAG TGTTGATTCAGGTCAGTCATCAGTGTGCCATAAAGAGAATAATAGTAGCTGGATTAGTAGTAGTAGTGAAGACGAGGATG GCTGA
Protein sequence (LotjaGi2g1v0379000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVSTRQLLPFRTTLHPRPTTTTTVTHTLPNTTPPPPSETDGKPPPFTRHHFQTLLQSSCQTPRHLLQIQALLITTTLA RIPFLARTLLSRASNLCGVDFTLLIFRYFNNPLDTFCVNTVISAYCKSHDPHLAQVFYFRSLRFRFFPNSYTFVPLIGSC GNTGCIVSGRKCHAQVIKNGFDSVLPVQNSLIHMYADCGDVQVARVLFDSMLARDLASWNSMVDGYLEAGDLSSAHALFD VMPDKNLVTWNIMISGFSKARNPGYALKLFREMGSVGLKGNATTMVCVVTACGRSARLKEGRSVHGSIIRMFSRSSLILD TALIDMYCKCRRVELATRVFERMTNRNLVSWNAMILGHCIHGSPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLQ PDEVTFIGILCACARAELLAEGRSYFKQMTDVFGLKPNFAHLWCMANLLANAGLVDEAEKCLRNMAKFDGDMSRESMLWA NLLALCRFRRDVYLGEQFAKLLVDMYPKNLACYQFLLIIYAVAAQWENVSTVQKLMKERRLGIIPGSSLVDLKYIVHNFK VSEKRHEGIEAVNMMMDELARRFRMPSVDSGQSSVCHKENNSSWISSSSEDEDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| Gene3D | 80 | 185 | 106 | 2.3E-7 | ||
| PANTHER | 107 | 244 | 138 | 8.9E-73 | – | |
| ProSiteProfiles | 114 | 148 | 35 | 8.002 | ||
| Pfam | 117 | 138 | 22 | 0.69 | ||
| ProSiteProfiles | 149 | 183 | 35 | 6.632 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.686 | ||
| Gene3D | 186 | 314 | 129 | 1.3E-27 | ||
| TIGRFAM | 189 | 216 | 28 | 0.003 | ||
| Pfam | 189 | 214 | 26 | 0.034 | ||
| ProSiteProfiles | 215 | 245 | 31 | 9.767 | ||
| TIGRFAM | 218 | 247 | 30 | 1.2E-4 | ||
| PANTHER | 230 | 308 | 79 | 8.9E-73 | – | |
| Pfam | 245 | 292 | 48 | 5.1E-9 | ||
| ProSiteProfiles | 246 | 280 | 35 | 11.137 | ||
| TIGRFAM | 248 | 281 | 34 | 3.7E-7 | ||
| ProSiteProfiles | 281 | 311 | 31 | 5.93 | ||
| PANTHER | 301 | 537 | 237 | 8.9E-73 | – | |
| Gene3D | 315 | 381 | 67 | 1.7E-8 | ||
| ProSiteProfiles | 316 | 346 | 31 | 8.232 | ||
| TIGRFAM | 321 | 348 | 28 | 1.8E-4 | ||
| Pfam | 321 | 347 | 27 | 2.5E-4 | ||
| ProSiteProfiles | 347 | 381 | 35 | 9.734 | ||
| Pfam | 349 | 376 | 28 | 1.0E-6 | ||
| TIGRFAM | 349 | 376 | 28 | 2.7E-5 | ||
| Gene3D | 391 | 605 | 215 | 9.5E-14 | ||
| ProSiteProfiles | 402 | 437 | 36 | 6.851 | ||
| ProSiteProfiles | 438 | 472 | 35 | 5.821 | ||
| ProSiteProfiles | 509 | 543 | 35 | 5.382 | ||
| MobiDBLite | 589 | 614 | 26 | - | – | |
| MobiDBLite | 589 | 608 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0379000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…