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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383400 |
| Transcript ID | LotjaGi2g1v0383400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein-S-isoprenylcysteine O-methyltransferase; TAIR: AT5G08335.1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family; Swiss-Prot: sp|Q93W54|ICMTB_ARATH Protein-S-isoprenylcysteine O-methyltransferase B; TrEMBL-Plants: tr|I3S3A6|I3S3A6_LOTJA Protein-S-isoprenylcysteine O-methyltransferase; Found in the gene: LotjaGi2g1v0383400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87988046..87991401) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGTAATACATGCCACTAATAGTTCATTTCCATGAGTTCGAAATCATTTTGGTCACTTGACCCACTCACTCTTCCGCA CTGCATCTTCACCAAATCCCAAGCTCCAACTCGTCACCGCACCGCTCCGCTCTGATCCTGCGGAGGTGGATTTCTCCGTT GCCTTCACCGCCGTCTAAATCGGTAGCTATGGCCTCACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCT CTCTCCCTCTATTAAGTTGATATGGATTCAATGCTGTCTTATGCTTGTTTGTGTTGTGTATATTAGGGTTTCACTTCGTG ATTTTATATCTCATACATATTCACTTCCTAAAGGAAGCTCCTCTTACCGCCTGTTCTTTCTCCTTTCACCACTACCACTT CCATAAATCTATTTCTCTGTACTGCAGCTGTTTCAATTTGTTAATTGATTTTAGGAGAAAAATGCATTAATACTAAGATC TATTTTATTGAAATCTACTATGTTAATTCTTTTGATATTTAGGATCATTGGTCTGGAATTCATAACAATCTGTTACTATC AAGGGTAAATGGAATTCATGAGTATAGATAGAACATCTTGTCCAATATGAGTTGAGCATGAGAATGAATTTCAAAGTGAT TTTATATCTTCACTGGTTCCAGCCAACGGAATTGACATTTCAAATCTATAATCCAAGGTCTAAATCTTAATGTTGGAGCA GAATATTCAGGATATATCTTTGGTTGTTCACGCCTGTTATTACTATAATGCAATGTTGGAAATTTATCAATTGCTCATAA TTTTGTTTTATAATTATAGGCTGCACTTCCTGGATTTTTGTCCAGAGGGCTGTCCATTGAAGAAGGGGAACTGCTACTAA AGAGGAGTGTTGAATTGGCAGTTGGAGCCCGTGACAGTTTCTGGAATTTAGCTGAAAGAAATCCTAGTAATAAATATAGA CAAGCTTTGGTTACAGCCTCTATCGGAAGCTAGGCGCTTACCTTGCTGATGGCTCAAAGACAGGTGCTTTTGCACTCCTT AACCATTGACACTTTACTTTAGATCAGCCAAGTCTTTCTGTGACAGCAAATTACATAAGAACTAACCAGACTGCGAAACA AGAGACTTATTGACTTATTTGGGAAAAAATGACAGAAATCCTTAGCTACACCGCTTGCAGACAGTTATCTCAGATGTTCG TTGCGATAATCTTCTTTCACGGTTCTGAATATTTTCTAGCAGTTCGAATTCATGGGAGATCGAGTGTAACGCTGAAGTCC CTTTTAGTTAGCAAACACTATCTTTTGGCAATGATGTTTTCATTGCTGGAATACTGTATTGAAGTTGTTTTATTTCCTGA GCTAAAGGAACACTGGGTTATCAGTGATTTGGGCCTGGCGCTGGTTGTGATTGGGGAAATTATGAGAAAGATGTCAATTA TAACTGCAGGGAAGTCCTTTACTCATCTTATTAGGGTTCATCATGATGACAATCACCAGCTAATCACTCATGGTATTTAT AGATTTATTCGTCATCCGGGATATTGCGGTTTCTTCATTTGGTCTGTTGGCACACAAATAATGCTCTTCAATCCCATATC AACTATTGGATTTGCAGTTGTTGTCTGGAACTTTTTTGCTAAGCGAATACCGTATGAGGAATACTTTTTGAGACAGTTCT TTCGAGCACAGTATGAGGAATACGCCCGAAAAGTTGTTTCTGGTGTGCCATTTGTAAATTGAGAACAAGTTAAGCCGGTA TAAGCTGAACTAAACCCTGTCACATCCATTCCAAATAATCAAAAAGTTTGAACCGCGCTTGTCTGGAACAACTTTGAGAT GTGCTTCACATTGCTGGAGATATAAAGTGCATGCTTGCAGATTGTCCTCTTAGATACCAGATAAAACACAGACCCTGTAA GAAGTGATGGAACAATTTTGGGAAATCACAGTGGTTATGGTTGGACTGTTGGAGAGAGAGAGATGAAGGGTCCACCAACA GCCATTACCACAATTGGATCTTCTATTCAGGTACTAGATTTAGTTATCAAATATGAATTTTTGTAATCTCTGAGATTAAT CAGTATGCAATTTTATAGACAATACTGATTAGAACCATCTTCTAATCATGGCACACCTTCAACCATCTTCTAATCATGGC ACGCCTTCAACCAATCTTCCTCTTGTGATAAGAGAACAATGCTACTGTTTACTTCTGATGCTTTAACATAAAGACTTTCT ATCTTTTAGCTTAATACCGTTGAACAATCTTATTGCTCTTATGCCCTCCTCATACAAAACCAAAATTGGAACTTCTGCCT ACTTTTTTCTTTTTAGGCACATAAGAGTTCTTGGCAGTTCCAGAACTTGAATAAATTGAGTTTTATTTGGTCAATCCCCT CATGCAGACCATCAATCTCACAATTTCTTATTATTCTAAACACCACATGATACAACAGAACAATTATTTTTTGGACCACC CTTGACTCAGACCACCAACAAGCTTTTGAATTGATTTAAACATAAATTAATACCAATCTTATCTACTTATCCCCCAACCT ATAATCTTCTCTCTGTTTAATCTCCATTAGTTAATTTCACTCTCAATCTCTTCTGTGTTGAGCTTTGAACTTAATTTGCA GTTAAGTATCTCATTGCCAAAACTGGTTCTTATATAAAGCATGAATTTGGTTAATTACCCATCTCAGTAAGCACTTTCCT GGAAGATTCTTGCTGCACTCCCGTGAATAACATACATGCTGGGTTAATTTAGGCCCGCTGTCGACTCAACCTCTCGCACA ACATATGTTGAAGATTGCGCATGCACTGTGGTTACTGTCTGTTGGAATGCTAGTTGAGCAACGAGTTATGCATGTTTATG TATAAACGAGTCCCACATGGGATGAAATTGAATATGTTGAATAGTTTATAATTAGGGGCAACACACAACCAATCACCTTA AGGTGTTGGGTTAAATATATGGTGACTAATCTGCTTTATGTGGTTGATTTCTCTGGCTCATGAATCCTTCCCAACTCATA CCTCTCACAGCCCACGATCCAATAATATAAATCTAAAAAAACGCCCATAAAAAAAGAAAAGGACCAAAAAAATGATTTAA GAAAAATAAAAAGAGGCCAGAAAAAATATAGGAAAAAAGAACAATTTGACTGCCATTAAACGTCATTTTCCTGAGATAAA CTAAAATCAAATTCGCTTACAAACTCATGGACTAATTTGACAATTAACCCTTTAATATATAATACAAATTTTAAATATAA CAGTAAATTTATTGGTTAAATTTTGCTCAGCTTTGAAGGATTTTTTAAGATATGAAACTAGGGTTTAAAGAGTGGA
CDS sequence (LotjaGi2g1v0383400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAATCCTTAGCTACACCGCTTGCAGACAGTTATCTCAGATGTTCGTTGCGATAATCTTCTTTCACGGTTCTGA ATATTTTCTAGCAGTTCGAATTCATGGGAGATCGAGTGTAACGCTGAAGTCCCTTTTAGTTAGCAAACACTATCTTTTGG CAATGATGTTTTCATTGCTGGAATACTGTATTGAAGTTGTTTTATTTCCTGAGCTAAAGGAACACTGGGTTATCAGTGAT TTGGGCCTGGCGCTGGTTGTGATTGGGGAAATTATGAGAAAGATGTCAATTATAACTGCAGGGAAGTCCTTTACTCATCT TATTAGGGTTCATCATGATGACAATCACCAGCTAATCACTCATGGTATTTATAGATTTATTCGTCATCCGGGATATTGCG GTTTCTTCATTTGGTCTGTTGGCACACAAATAATGCTCTTCAATCCCATATCAACTATTGGATTTGCAGTTGTTGTCTGG AACTTTTTTGCTAAGCGAATACCGTATGAGGAATACTTTTTGAGACAGTTCTTTCGAGCACAGTATGAGGAATACGCCCG AAAAGTTGTTTCTGGTGTGCCATTTGTAAATTGA
Protein sequence (LotjaGi2g1v0383400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEILSYTACRQLSQMFVAIIFFHGSEYFLAVRIHGRSSVTLKSLLVSKHYLLAMMFSLLEYCIEVVLFPELKEHWVISD LGLALVVIGEIMRKMSIITAGKSFTHLIRVHHDDNHQLITHGIYRFIRHPGYCGFFIWSVGTQIMLFNPISTIGFAVVVW NFFAKRIPYEEYFLRQFFRAQYEEYARKVVSGVPFVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| ProSiteProfiles | 6 | 197 | 192 | 24.494 | ||
| Gene3D | 9 | 196 | 188 | 5.3E-33 | – | |
| PANTHER | 12 | 196 | 185 | 3.9E-94 | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| PANTHER | 12 | 196 | 185 | 3.9E-94 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 31 | 50 | 20 | - | – | |
| TMHMM | 50 | 69 | 20 | - | – | |
| Phobius | 51 | 69 | 19 | - | – | |
| Phobius | 70 | 74 | 5 | - | – | |
| Phobius | 75 | 92 | 18 | - | – | |
| TMHMM | 76 | 93 | 18 | - | – | |
| Pfam | 83 | 174 | 92 | 6.2E-28 | ||
| Phobius | 93 | 134 | 42 | - | – | |
| Phobius | 135 | 163 | 29 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 164 | 197 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester. | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | C-terminal protein methylation | The methylation of the C-terminal amino acid of a protein. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0383400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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