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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383500 |
| Transcript ID | LotjaGi2g1v0383500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0383500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87992350..87996972) extracted from Lotus japonicus Gifu genome v1.2.
AGGGTCTGATCAATGAGTTTTTATATTGGTAAGAGTTGGGAATTGAACTCCAACCACTTGAACCACTGCGCCAACCCACT TGATTGGGGGGGGGGAAGCAATGTAAACATTAGAGAACAATTAAAATTTTGTGGGGGCTATTTCACCGATAGCCTCTAAC TTGGATCTGTGCCTGCATTATGGTTGTATCAGTTTTTCTTCAAATTTTAATTTTACAGGGCAAGCCAACTAAGGCGCGTG CGCCTGCCAAAGTGCTATGCTCTTTCAGATGAAGGAATGACGGAGATTGTGAAAAAGCTTCCACTGTTAGAGGAGCTGGA TATTTCATTTACCAATCTATCTGAGGATGCTCTTGAAGCTATTGGGCGATGTTGCCCTCGTCTGAAAACATTAAAATATA ACACCCCAGTGGACACTTATGTCTATGATCGGGAGGCGTTTGCTATAGCGAAAACCATGCCTCAGCTACGTTATCTAGAG ATTGGGGGAAACAAGCTCAGCAATCATGGCTTGCGTGCCATTCTCTATGGTTGCCCTCTGCTTGAGTACATTGATCTGCG ACATTGTTACAAACTTGATTTGAGTGGAAGTTTGGGGAAGATGTTGCGTGAGAAGATTAAAGAGATAAGGCTGCCACTTA ACCTTGGAAGTAATGGTCCGCTATTTGATTTGAAGGCGTACATGGAAAGTGAATTAGAACATGCTTGTCAATCTTATGAA TTTTTGTAAGTTGCGGAGATGATTGGGTGGGAAATATTTAGATCATGTGTTAATTTCGGTAATTTCGATCACTGTTTACA GCAGGCATGGTTTTGTTGAAGAGACTCAGGTGTTTATTTTGCTGCTAGAATCATTTTGTTGAAGACTTTGTATCAGAAAG CCTGTTATTTTGTTTTTAGTGTTGCAGTACTGATATTTCTGAAGAACCTTGCATTCCTGTATTAGTGGATAGTGTTTTTA TCAAACTGGTGGCTTGTCCTTTTGTTTCTTTTAGCTCATATTTTCCTTTAGGTTTGTTTCTTCTAAGCATGGGCATGATA TTTTGTGATATTGTTTTCTTGGATTTTAATTTGTTCAAATCTTAGTTCTGTCTGATGGTTTGCGATTATGTTTTAGTCTT GTTTGTACTATCGATTATGTTTTGTTTTAGTCTTGTTTGTACTACTTGCAAATTCTGGGTTTATATTAGTCTCATTAAAA ATGGTTTGCTCAAGGCTATGTGTTGATTGATGGAACATAATGTAATGAAAAAGAATGAGATGGAATGGTATAAAAATAAT GAGATGGAGTGGTATAAAAATATCTTTCAGTTGTATGGATATTTTATGATAGAATAGAACAAATTCAACACTCCACTATT TGGATAGTAGACTGAACAGATAGTGGACTGAACAGAATGGATTGTTGCTTTTCTTATTCCTATATTACATGACCAGATTG GGGTTAAAGGAGGTTCAAATCCATGTTCAGTTCATCAGTTGCATTTCCATTATCAACATGTTGTTTATCACATCCCTTCA TTGTATGTATTCTTCCTATTCCTAATTGTGGTTAGGTTTTTCTGCTGAATAATTATATTCCTTAGGATGTTGGTTTTAGA TTTTATTTGATGATCTAAATACATTAGATCCACTATGGGAGGTTAGGTAGAGCTCTTTTTAAGGAGTAAACCATCAATTT CAGCCCTGAATGTTATCCTTGCTAACGATTTCGTCAATTTCGTATAACATTCTAATTTGAGTGAAGTAGCATTTTTTTTG TGTGTGCACCAAGAGGTTAACTCCAAAGCCGGTAGCTATGAGACTAACTCCTTAGAGGCTCTCATACCACATTAAGTGAG TATGTCTCAAACAAATCATTCTCCATTGAGTGAAGTAGCAGTGATAAGGAAGCATGAATGTGTTTCTACTGATATTATTA TTTTTCCAACGGAATGGACAGCTTGCTGCCTATGTTTAGGAATGTGATATGTGGCATAGCATGATACTTGTGATCATTTT CATGGCTTGTTTAATTGTCGGGTAAAAATGGGAAGTCTTATTGCCTTTAGTGTAAGTTGTGGTTTATTCCCCATCAGAAT CAAATCACTTGTCCTCTTTGTAGAATTTGTAATGTGTCATTTTTCAATTGGAGGGACAGGAAGCCATTTGGATTGAAGAA AGGGACAGGCAACAAGCTCTTCTGATACCATAGAGAGGTAGAGGAGAATGGGTTCTATTGTTCAGTTGAAAGTAATTAGT GGTGGAAAGTAACTGTTATTAGTGGAGAGGAATTATTGCTATTAATGTTAGTGGAGGTAATTAGTGGTTACGGGAGTGAT TAAGGGAATAGTTGTGACTCTTTGGTTGATGTTACAATTATCAAAGAACCCTAAACCCAAAATGAAAATTGAGTAATTAG AACTGATAAACTTAGGAAATCCTAGATCAACAACATCCTATAGCAATGACTAGAAATCCTTTTCTATCGTTTTTTTCTTT TTGTTTTGCTTTTCTTCTTATTACAGTATTTACCAAGCATGTTGTGTGAGCAAATGCAATAAAAACTTGAGCTAGAGACA CTAATTAATGGCCCACAAAGCTAATTTGGTACACGTTCAATGTATAAACAAAGAGATTTGTGCTTATGAAAAAACAGAGA TTTATGCCATTTATGTTCTTTGATCGATTGCTAAATATTTTATTTGATTGGGAAATCGCTTAAGGGGCACATTGGCTGTG GAAATATAGTAATATACACGTGCATGCGTGGTGAAATTGAAAAGAAATGATACATCATACATAGTCACATGACAATTCAA ATCTTACCTCTGTTTCAATGCTTCCTTGTCGATTTTAGCTGGGTAAAATTTACTTGTCCGTGTGTTTTTCGTTTGCTTTT TCATCTGTCAATCGAGCAATTACCAATTAGGAATTGCAGATCGTGCAATGTCTTGATGTTCATGAGGTTTGATCCAACTT GCTTGATCCTAACACACGTATTTGGTTGTTACAAAGATATCTTGAATTTCAAATTGTGTGTTTCAACAATTTGTTACCGT AACCGTATTAATTATAAATGTAGCACACCTCAGCCAGTTTCTACATACGGTTTTGTTTTACAGTGCTTTGCAGGATGGAT TCGTATTCAAGACCAGCTAAGGAGGCGGAAGGGGAGAGCACAAATGGGACACCAAACTGGCTTAAACTTCCAAGAGAATT GACAACAAACATACTTCAAAGGCTTAGTGTGGAAGAAATTTTGATGAGTGCAAGTCAAGTGTGCTCTTTATGGTGGAGCA TCTACAAGGATCCTCTCATGTGGCGCACCATTGACATGATCCCCCATGCCTATCATTCAATCTCCAAATTGGTGATGATT TGTAGAAATGCGGTTGAACGAAGTTGCGGTCATCTCAAAGAAATTAGTATTGAGCGTTTTGCCTCTGATGATCTCCTCAA ATACATTGCTGACAGTGACAGGTATAGTTGTATGCATGTTTTTCTTAATTTTTTTTTCTTAAGATCGATGCCTTTTTGCT TGATATCCTATCTCATGCATGCTCATGCGATAGATCTACTTGTATTTTATAGTCATTGGCCATCTTTTTGTCATGCCCTA CTTTTATGCTGATAAATTAATGTACTAATGACAAGTCCATCAATTTTATTTTGGACGCGTCTGTTTGCTATATATGGATA ACTAATTGTGTAAATTTTATTTACTTGGTGGTTCTGTTTTTCTTCAAATTTTTAGTGCAAGCCAACTACGCAGTTTGCGG CTTCCACATTGCAGTGCAATTTCAGATGTAGGATTGAAGGAGGCTGTGAAGAAGCTCCCAATGTTAGAGGAGATTGACAT TTCATTTACCAATCTATCTAAGGATTCTCTTGAAGCTATTGGGCTTTGTTGCCCTATGCTGAAAACATTAAAATATAACA CCGTGCGTGACATTTTTGCCTATGATGAAGTGGCGTATTCTATTGCAAAAACCATGCCTGAGCTTTGTCATCTAGAGATC TCAAGAATCAAGATCAGTAATAAAGGCTTGGTTGCTATACTAGATGGTTGCCCTCAGCTTGAGTATCTTGACCTGAAATC TTGTCTTGGTCTTGATTTGAGTGGAAGTTTGAGGAAGAGGTTGTGTGAGCAGGTCAAAGAGATACGGCTTCCATTTGCCT TGGAATATTACAATTCAGATGATTCCTATGACATTGGTTTGGAATTTGATGCTAATGCGGACTGGGAAAGTGAAGAAGAT CGTATTTCCCAGTTTATTGAATTCTTTACTGTCCGATTTGATTGGAGTACTGGAAATATTTAAATCACATGTCATTTTCA GTAATTTTGATCACTGTTCACGGCATTATTTTGATGGAGTGACTGAAATCTTAAGTTTGGTGTTAGGAGTCATGTTTTTT GAGTGAAGACTTAGGATTGGAAAGTCTGTTATTTTTTTGAAATATTGCCGTATTGAAATTTCTGATGAACTTTGCACGCT GCATTAGCGGATGGCGTTTTGAATTTATAATATCAAGCTGGTGGCTTATGTTTTTGGGTTCTTCTAGCTAATATCTGGCT TGATATTTGTGGTATTGTTTTTTGTGTTTTGGAATTGTATGAAGGAATGGAAAAATATCCGTG
CDS sequence (LotjaGi2g1v0383500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGTATTCAAGACCAGCTAAGGAGGCGGAAGGGGAGAGCACAAATGGGACACCAAACTGGCTTAAACTTCCAAG AGAATTGACAACAAACATACTTCAAAGGCTTAGTGTGGAAGAAATTTTGATGAGTGCAAGTCAAGTGTGCTCTTTATGGT GGAGCATCTACAAGGATCCTCTCATGTGGCGCACCATTGACATGATCCCCCATGCCTATCATTCAATCTCCAAATTGGTG ATGATTTGTAGAAATGCGGTTGAACGAAGTTGCGGTCATCTCAAAGAAATTAGTATTGAGCGTTTTGCCTCTGATGATCT CCTCAAATACATTGCTGACAGTGACAGTGCAAGCCAACTACGCAGTTTGCGGCTTCCACATTGCAGTGCAATTTCAGATG TAGGATTGAAGGAGGCTGTGAAGAAGCTCCCAATGTTAGAGGAGATTGACATTTCATTTACCAATCTATCTAAGGATTCT CTTGAAGCTATTGGGCTTTGTTGCCCTATGCTGAAAACATTAAAATATAACACCGTGCGTGACATTTTTGCCTATGATGA AGTGGCGTATTCTATTGCAAAAACCATGCCTGAGCTTTGTCATCTAGAGATCTCAAGAATCAAGATCAGTAATAAAGGCT TGGTTGCTATACTAGATGGTTGCCCTCAGCTTGAGTATCTTGACCTGAAATCTTGTCTTGGTCTTGATTTGAGTGGAAGT TTGAGGAAGAGGTTGTGTGAGCAGGTCAAAGAGATACGGCTTCCATTTGCCTTGGAATATTACAATTCAGATGATTCCTA TGACATTGGTTTGGAATTTGATGCTAATGCGGACTGGGAAAGTGAAGAAGATCGTATTTCCCAGTTTATTGAATTCTTTA CTGTCCGATTTGATTGGAGTACTGGAAATATTTAA
Protein sequence (LotjaGi2g1v0383500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSYSRPAKEAEGESTNGTPNWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIPHAYHSISKLV MICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDS LEAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGS LRKRLCEQVKEIRLPFALEYYNSDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFDWSTGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| SUPERFAMILY | 9 | 70 | 62 | 6.15E-12 | ||
| PANTHER | 11 | 251 | 241 | 4.2E-81 | – | |
| PANTHER | 11 | 251 | 241 | 4.2E-81 | – | |
| Gene3D | 15 | 67 | 53 | 2.5E-10 | – | |
| ProSiteProfiles | 19 | 66 | 48 | 11.697 | ||
| Pfam | 22 | 67 | 46 | 1.2E-7 | ||
| SUPERFAMILY | 78 | 235 | 158 | 1.9E-19 | – | |
| Gene3D | 82 | 255 | 174 | 6.3E-27 | ||
| SMART | 91 | 114 | 24 | 240.0 | ||
| SMART | 117 | 142 | 26 | 0.75 | ||
| SMART | 143 | 167 | 25 | 380.0 | ||
| SMART | 196 | 220 | 25 | 120.0 | ||
| SMART | 221 | 241 | 21 | 570.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0383500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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