Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0384200 |
| Transcript ID | LotjaGi2g1v0384200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane and coiled-coil domain-containing protein 4; TAIR: AT4G36210.3 transmembrane/coiled-coil protein (DUF726); Swiss-Prot: sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3; TrEMBL-Plants: tr|A0A151TIT5|A0A151TIT5_CAJCA Putative membrane protein F35D11.3; Found in the gene: LotjaGi2g1v0384200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88057988..88065460) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATCCTATAAGGGTGATTTATTCTACGTTATCTTCTCATCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTGTGTTCTTCTTCTTTCTTTTTCCACTCCACTCCTCTTATGGACCTCATTGTTCCT TCCCTCTTATGCGTTGGACAAATTTTCCTTGTTCCTCTGTTCGCCTACCCTCTTCTCGAATCGCACCAAAGGATGTGAAG AGAAAGTGAACCTCATCGTAGAGAAGCGACACATCTTATGTCCTCCTCCTCCATTGTTTCACGGCGTTTGGTTTGTGGTT ATGGGGGAGGAGACCTTGATGTTCATGTCAAGTTGGGGTCGGTGGAGTCTAGAGTTTTGGGGAGGTAAAAGAGGAGTACT TTGGGGTTGTGCGTGAAAAGAGGTTCGAAGGTTAGAGTTCTTTAATCTCAAACTCTTCTCCCATGCGCCTATTCTTAATC TCATAATTGACATTTCATTTGTAGAATATGCTAAACTTTTGGTCTAATTGTATGTGAGTGCGATTATGAATTCAAGATGT CTGGATATGTGGATAAGAATGCCTTATTCGCCACGTGACGTCAAGTGCAAATTCAAGAAGCGTATTCAAGTATAGTTCTT CGAATTCCATTTGAAAACTAAAGTCTAATGTTTTAAACTGACAAGATGGTTAAATTAATCTCTGTTAGTCTAGTGAATTT TTTATTTTGTAGTTTTCCCTTTCCGTTATGTCTCTTAATATTTGTCACCCTCCCTAAAAGAGATCGCTAAGTTGTGTTGC TGATTTTTATTTTTTATCCTTACCTTTTCATTGAAAATAATGCACAATGTCCTTAATTTTCTTTCAAAAATCCATAGACA ACTTAGATAACCTTTAATCCATAAGGTTGGACAAACAAGATTTATTCTTCAATATTTAATTTATCATCTATATTTAGTAG AGAAACATCAGTTATTAATTCTAATATTTCATTACGTGACATGTTTTATGTATTCATTTTAATGTCAATGACATGCTATG AATAACTCTTTCTCTCTTAGTAGTATGAGTTAATTTAACTTTTTTCCTAAACGGCAAGATAATAACTTATGCATACATAC AAGTCAATACTCATAGCGATAGATGGATAATGTTGGAATAAATGATGTAACCCTTTTTAAAAAATTGATACTTAAACATA TAAAGTATAAACCGTTACTAACATCTAACATATACTTAATTTTTTTTTTCTCTATCTCAATTTTTGATATTATAAAATTG TTTTAGACCCAAAGTGCATATTTATTAAACTTATTTTTTCTTTTATTCATTTCTCACTTCAATTATTTATTGTATGATTC TTATGTGTGAATATATCATTTTTCCAACATCTTATATTATGGTAAGTTGAATTTGGAGAGAGTTTGGATATTCAATTCCG AGAACACGTCAGAGAAAGAAACCGCGGTTTGAACTCCGATCGATGTGATCCTGATGATGGCGGCGACGTCGTATCTGACG CCGACGCAGCGCTACGCTGCCGGAGCATTGTTCAGCCTGTCTCTGCACCAAGCCCACCTTCACCAAACCCACCCGCTTGG CCTTTCAACCCACGATGAATTCCCTTCTCCCTCCACATCTTCTTCTACTCCCTTTTCCGTTTCCGAGGATCCCAACCTCT GGGTCCACCGCACTTCCGGTTTGCTCCGCCCTGTTTTCATGTATGCTTTCAATTTCAATCAAATCATGAATGTTCATCGC ACCTTATTGATTTTCATGTATGAGTGTTGATTTGTGTGTTTCTGAGCAGGTTTCTGGAAATTGAACCTGGAGCATGGTCT GGACTTGAGGAAACTGCTGGCTCTACTTCAGCTTCCCGTCACGTTGGACCGGTATGTCTCCTCATTTCTAGCTTATACAT GCTTGCTCATAAAGTAATGATGCATTCATGGTTAATTGGTTATGCTTTTTAATCTTTTGTTAATGTAAGTTAAATTTGAT TATGTATGTGAATGTGACAGTACTTGAGACTATTATCAGAAGAATTTGATATTGATGAAGATGGTGATTGTCAAAGGGCA GATCAAGAACTTGCTTTGTCAGAAGCTGTTGATGCTATGGTGCTTAGCCTGGAAAAAAATGCACAGGCTTCCAGGGCGAA ACGAGAGAAGTTTCGCGAATATGAGAATCAATGTCGTGAAAAGGTTTCGACTGCTGATGTTCAATCAGACTCTGAGGAGG TAGACATTCATTTGGAAATTCAGAAGGAGACCGATAGCCCTTTGACTCCTTTCTTTGAATGTGAAGACGTACACGAGGGA TCTGTTAATCATGACATTGATGAGAGTCCAATTGAGGAGGTGATGAAGCTCAGCTATCAGAGGAAAGTGGCAGTTCTATA TCAACTTCTTTCTGCTTGTCTTTCGGACTTAGGTGAAAAAAACGTTAAATATAATCGGAGAATAAAAGGCTATGATGCTC GACATCGTGTGGCTCTACGGTTGCTGGCAACTTGGCTTGATATCAAGTGGGAAAAAATGGTTTGTAAAGTGACTCTTGTA GTTATTGACTTTATTTTACTGGCCAACAACTTTTTTTAAGTTGAGTTGATCATGAAAAATAAGTGTAAGGGTTTTATACT ATTTACTATGTACTGAAAAGACATGTAATCAATTAATCCTTGCTTTGGTGAGCACTGCCTATACATCATCTTGATTTCTA AGTTATGTATTGACCCTAATTCTAGGAAGCTATATGTTATAAGCTTTGTGTGAATTTTCTTCATTAACAGCTTATACTTA CTGGTTCCATATCTTCTAGTGATTACTGATTAAAATAAAACTTCACTTTGCAGGAGGCCATTGAGACTATACTAGCTAGT TCTGCAATGGCTTTCATTAAAGAGCAAGAATCAAATAAAGATGAAACTGAATCAAAAGAAAGCAAGTGGGCTAAATGGAA GCGAGGTGGCATTATTGGTGCTGCAGCGTTAACTGGGGGAACCTTGATGGCTATTACCGGTGGTATGATACATTAACATA TTTTCTTTGTTCTGGAATACAAATGTTAATTGAATGACTTTTCTTGTGGATTTGACTCTTTCCATCTGTGAGCATTAAAC AGGATTAGCTGCCCCAGCAATTGCTGCAGGACTTGGTGCTTTGGCTCCAACGTTGGGTACTTTGATCCCTGTAATTGGAG CAAGTGGATTTGCAGCAGCTGCTAGTGCTGCAGGAACTGTTGCTGGTTCTGTTGCTGTTGCTGCCTCCTTTGGAGGTATA TATTTGCCTATATGCAATTATATTTTAATTTTACAAGGATTTTAAGTGTCTATTTATGAATTTCCGGTGTTGTTTAAGGA ATAAGGATACTATCAGGAAATTCAGGATAACCAATCTTTATGCACGTGCTTATGTGTCTTAGAGGTGTATTTTGTTCAAT TTGAGATTTTTGTATTTGTCTTCAATATGGTGGTTTTTGTGCTCAAATTACACCTTTTTGCTGCTTCTGCTATTATTGAC CAGCATTTGGCATGCTTACAGTAATTGCTCAAATGAGATAAATTAGGTACTGGGTCAGCATATAAGAAATAGTTGATTCA TAAGAAAACGGTTGTTACAGCCAGGTATTCGAGAGATCCTGTTCTTTCCCAGACTAGATTTCCAAAACAAAAGATAGCCT TCTCTAAACTTCTTCCTCCTTATTTATAGCCTCTCATCTTTAACTATCTGCCTAAACTAACTCTCTAACTTAGGAACTCT TTGAATTACCTTTTCAGAAGACAATTTATAAAGGGCATGTGAGATCTTTTCAAAAACAACACAAAACTAGGGCTTCTGGA GGAGTTATGCATCCCCATTAATACCCTTATAACCTAATTTCCTACACTGGAAAACAATACATTTAAGATTGGCTTACTAC TTTGTGTTACTACTAGTGATGTGTGTATGTATGCCTTTGTTTTACCAGCTGCTGGAGCTGGACTTACTGGAACCAAAATG GCTAGGAGAACTGGGGGTGTTGACGAATTTGAGTTCAAAGCTATAGGTGAAAACCATAACCAAGGCGTAAGTTTTTATTG ATTTCCCATTCTGGTGACATTTCTTACTTGATTCAGTTTTGACCTCTGTGCACGTGAGCACATGCATGTGTGAACTTTGT CTAACCTTTATTGTATTACTTAATACTACTATTGCGTTAGTTTATTGTTTCAAATTGGATTTTGCTCACAGAGGCTTGGG GTTGAGATTTTGGTGTCTGGCTTTGTCTTTGAGGAGGAGGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGA GAGGTACACATCTTTGCCATTTTCCATCTCCTAAAATGGTTCTTTCATTAATCATTTTTTAGAAAAAAAGTAGTTGGTAC TGTTAAGATCCCACATCAACTAGGTACATGACCAAAGTACTCCTTGTAATACGTGGTTGAGGCACACAGTCAATTCTTAT TTCTAATATGGTGTTGAAACCTATCCCAGTCGTCATAATTTTAGCACTACAAATTTTATGCTAAAAATATCAATCCTATT CTGTTTTTAGTTCTAATAGATACAATGGTAAATATTATTGTTGAATACAACTTTTATTAGCTGAGGACATGTCAATACAA TATGTCAACATGTTTATGGAAAATTACCTTATATTGAAATAATGAACTTTCCAACTGTTTTTGCTCATTTGTTAATTGCA ATGTTGATGTTCTAATGATTGATCCCAGCAAAACAAATGACATTTCATATGGCCTTGTCAAAAGTTAGGTATGCACTGCA GTGGGAGTCCAAGCATCTCATTGCCGTGAGCTCTGCAATTCAAGATTGGCTTACTTCAAGTACTTGATTTGGGTTTCATA AGTCTTTTTGATAGTATATTCAAGCAGAGTTGTGTATGATATAGATATTTCTGTGATTTGCACTAGGAATTGCCACAGAG CTGATGAAGCAAGGCGCAATGATGACTGTCTTGCATGCACTTGTAACTGCATTTGCTTGGCCGGCTGCCTTACTTACAGT CACTGAATTCATAGACAGCTCATGGACAATGGCTATTGACAGGTTTACTTTTATTTCTTGGTTTTAAGTGGAATAGAACT TTTACATGGTAAAAAGGAATGTCTACTACTTGCTCTTTGTTACTTAATTTAAGGGTTTCAATTGCTTTTGCTGGACAGTA TTCAGTGGTGTAATTGGTTGTCGATGGATTATTGAAGGATTTAATAAACTTAAACTCTCGTTCAAGTTAACAACTGTATG AAACTAACTTTAAGCAATTTCATTTTTTGGGGAACTTTCTTACCATATATCTTATGTGCTATTCCTACCATATAGGTATT TTAAGGCTTCATCGTATCCTACCTTGTCAAAATGAACTCTTGATTTTTCCTATTTCTTGTTTGTTAAATGCCATGTCCTA GGCAAAACCATGTAGGGGATGAACTCTGAGACATCATTATTATTTTTTTCGATAGTTTTTATCGTCTCAATGATAAAAAA ATTACACAGTTTTCCATCCGTTCTTAGTTTACCATTAATTCTGCTTTTCTAAGTTTATTTTATTATTTAGGTCAGACAAG GCAGGAAAGTTGCTTGCTGAAGTTTTATTGGGAGGACTGCAGGGAAATAGGTATTTGGCTTATTTTGAAGTTTCTTTAAA GTATAAAATAGTGGAATATGCAATATTTTTAATTTGTGAGTTTCAGACCCGTGACACTTGTAGGTTACTCACTTGGAGCA AGAGTTATTTTCAAGTGTCTTGAGTTTTTGGCTGAAACAGAATGCCACGGTAGGTATTTCCACTTCCATTTTGTTTTGTC TTTGATGTGATGGACTTAATTCATTTGTTTCCTTGAGATTCTTTAATCTTATTAACCACCTGTCAGAGGGTAACTTCTCC CTCTTAAACTTTTTAACTCTAGTGATTGGTAATAAGATGATACCAGTTATTAATTTTTACGCGCTTCTTCTGTTTGTTGG CAGCTGAACTGGTAGAAAGAGTTGTTCTGCTTGGAGCACCCATTGCAATCAAGGATGAGAATTGGAAGGCTGCTAGAAAG GTGAAAGAGGATTTTATTTTTCTCTTGATAGCACCTTCTCAATCTCACCTGTATGATGGAAATATTGTTTTTATTACTTT TAATGAGATTCTGGTATCCTGTAGATGGTAGCAGGAAGATTTGTGAATGCATATTCAAGGAATGATTGGATGCTTGGAGT TGCTTTCCGTGCCAGGTACATGAAAATGTTGTGTTAGAATTTCTGTGGCTTGTGGATTCTTCAAGTTGATCCATAGGACA TCACCTATAGACCAATTAATTCTTGCAAAGATTCACGTCAAAATTAAAGATGAAATGAGATTCACTTCAACATCACCTTA ACAGAGCACTAAGCACTAGCACTCTTCAGAATGATTACTTGTACCTTTTTAGTAGATTGTAAGTAAAAACTAATCTACAT GCTGTGTGCAGTCTACTTACTCAAGGATTAGCTGGAATCCAGCCAATTGATATTCCTGGGATCCAAAATGTATGTGTTTT CTTCATAATCTTGGATCCACAACTGTTTCTGCTTGTTACTTTTTTGTTCCGGTTATAAGTTGTTGCTATTATCTAGAACT TGTATAATAAGTGCTAGCATTCATAATTCATTGAATTTGATTTTTAGCTAAAATGGTTCATTGGTTTTGCAGGTTGATGT AACAGGTCACATTGAAGGCCACTCCTCTTATTTGTGGGCTACACAAAAGATCTTAGATGAACTTGAAATGGATACATATT ATCCCGTTTATAACAGTATTCTTGTCATACAGTAAACCCTCCAACTTCTTCATTGTTTAATTATTATGAAGAACGTTCTA GTGTCTGTGTCACTGTCTATCAAGTGGATCGAGGTTCCCTCAATTTTCCAAAGAAATTTACAGTGATTTAGATTTTCGTT CATCAGAATCCTTGGATTGAATTAATGCCTTGTATATGATAGCATCCAGCCACATCCGCCTCTTCTTCGGTTATACAGAC TTTCCATCATCTGTTTTCCCTTCTTAGTCTTTTTAGTTTTATTCTGATTATTACATGTACGAATGTAAAGTGTAACAAAA AAAAAACTCTTTGCCTTCCTGTTGTAACAAAAAAAAAACTCTTTGGTACTTATTAGACTTAATTGCATTTTTAGTCCCTT AACTTTTACTATATTAGATTTTGTCTCCTCTAGTTTTTTTCCGAGGTAATTAAGTACTTTTAAAATTAAGCAAATTTGCT GCATCTACCAATTTAATATACATAACATAAATTGGAGATATAAAATGATTTTAAAAGTCTAAAAGCCAGAAATTTAGTAA ACTAGGATATTAGCCCGATTCCGTGCTATGCACGGACGAGCGATTCTACGTTTTATTATTTTTAATTGTATAATTTAACA AAAGAAAATAATTAATAAATATATCAGTAATGC
CDS sequence (LotjaGi2g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCGGCGACGTCGTATCTGACGCCGACGCAGCGCTACGCTGCCGGAGCATTGTTCAGCCTGTCTCTGCACCAAGC CCACCTTCACCAAACCCACCCGCTTGGCCTTTCAACCCACGATGAATTCCCTTCTCCCTCCACATCTTCTTCTACTCCCT TTTCCGTTTCCGAGGATCCCAACCTCTGGGTCCACCGCACTTCCGGTTTGCTCCGCCCTGTTTTCATGTTTCTGGAAATT GAACCTGGAGCATGGTCTGGACTTGAGGAAACTGCTGGCTCTACTTCAGCTTCCCGTCACGTTGGACCGTACTTGAGACT ATTATCAGAAGAATTTGATATTGATGAAGATGGTGATTGTCAAAGGGCAGATCAAGAACTTGCTTTGTCAGAAGCTGTTG ATGCTATGGTGCTTAGCCTGGAAAAAAATGCACAGGCTTCCAGGGCGAAACGAGAGAAGTTTCGCGAATATGAGAATCAA TGTCGTGAAAAGGTTTCGACTGCTGATGTTCAATCAGACTCTGAGGAGGTAGACATTCATTTGGAAATTCAGAAGGAGAC CGATAGCCCTTTGACTCCTTTCTTTGAATGTGAAGACGTACACGAGGGATCTGTTAATCATGACATTGATGAGAGTCCAA TTGAGGAGGTGATGAAGCTCAGCTATCAGAGGAAAGTGGCAGTTCTATATCAACTTCTTTCTGCTTGTCTTTCGGACTTA GGTGAAAAAAACGTTAAATATAATCGGAGAATAAAAGGCTATGATGCTCGACATCGTGTGGCTCTACGGTTGCTGGCAAC TTGGCTTGATATCAAGTGGGAAAAAATGGAGGCCATTGAGACTATACTAGCTAGTTCTGCAATGGCTTTCATTAAAGAGC AAGAATCAAATAAAGATGAAACTGAATCAAAAGAAAGCAAGTGGGCTAAATGGAAGCGAGGTGGCATTATTGGTGCTGCA GCGTTAACTGGGGGAACCTTGATGGCTATTACCGGTGGATTAGCTGCCCCAGCAATTGCTGCAGGACTTGGTGCTTTGGC TCCAACGTTGGGTACTTTGATCCCTGTAATTGGAGCAAGTGGATTTGCAGCAGCTGCTAGTGCTGCAGGAACTGTTGCTG GTTCTGTTGCTGTTGCTGCCTCCTTTGGAGCTGCTGGAGCTGGACTTACTGGAACCAAAATGGCTAGGAGAACTGGGGGT GTTGACGAATTTGAGTTCAAAGCTATAGGTGAAAACCATAACCAAGGCAGGCTTGGGGTTGAGATTTTGGTGTCTGGCTT TGTCTTTGAGGAGGAGGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGAGAGGTATGCACTGCAGTGGGAGT CCAAGCATCTCATTGCCGTGAGCTCTGCAATTCAAGATTGGCTTACTTCAAGAATTGCCACAGAGCTGATGAAGCAAGGC GCAATGATGACTGTCTTGCATGCACTTGTAACTGCATTTGCTTGGCCGGCTGCCTTACTTACAGTCACTGAATTCATAGA CAGCTCATGGACAATGGCTATTGACAGGTCAGACAAGGCAGGAAAGTTGCTTGCTGAAGTTTTATTGGGAGGACTGCAGG GAAATAGACCCGTGACACTTGTAGGTTACTCACTTGGAGCAAGAGTTATTTTCAAGTGTCTTGAGTTTTTGGCTGAAACA GAATGCCACGCTGAACTGGTAGAAAGAGTTGTTCTGCTTGGAGCACCCATTGCAATCAAGGATGAGAATTGGAAGGCTGC TAGAAAGATGGTAGCAGGAAGATTTGTGAATGCATATTCAAGGAATGATTGGATGCTTGGAGTTGCTTTCCGTGCCAGTC TACTTACTCAAGGATTAGCTGGAATCCAGCCAATTGATATTCCTGGGATCCAAAATGTTGATGTAACAGGTCACATTGAA GGCCACTCCTCTTATTTGTGGGCTACACAAAAGATCTTAGATGAACTTGAAATGGATACATATTATCCCGTTTATAACAG TATTCTTGTCATACAGTAA
Protein sequence (LotjaGi2g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAATSYLTPTQRYAAGALFSLSLHQAHLHQTHPLGLSTHDEFPSPSTSSSTPFSVSEDPNLWVHRTSGLLRPVFMFLEI EPGAWSGLEETAGSTSASRHVGPYLRLLSEEFDIDEDGDCQRADQELALSEAVDAMVLSLEKNAQASRAKREKFREYENQ CREKVSTADVQSDSEEVDIHLEIQKETDSPLTPFFECEDVHEGSVNHDIDESPIEEVMKLSYQRKVAVLYQLLSACLSDL GEKNVKYNRRIKGYDARHRVALRLLATWLDIKWEKMEAIETILASSAMAFIKEQESNKDETESKESKWAKWKRGGIIGAA ALTGGTLMAITGGLAAPAIAAGLGALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGG VDEFEFKAIGENHNQGRLGVEILVSGFVFEEEDFIRPWEGQNDNLERYALQWESKHLIAVSSAIQDWLTSRIATELMKQG AMMTVLHALVTAFAWPAALLTVTEFIDSSWTMAIDRSDKAGKLLAEVLLGGLQGNRPVTLVGYSLGARVIFKCLEFLAET ECHAELVERVVLLGAPIAIKDENWKAARKMVAGRFVNAYSRNDWMLGVAFRASLLTQGLAGIQPIDIPGIQNVDVTGHIE GHSSYLWATQKILDELEMDTYYPVYNSILVIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 315 | 315 | - | – | |
| PANTHER | 5 | 666 | 662 | 0.0 | ||
| PANTHER | 5 | 666 | 662 | 0.0 | – | |
| MobiDBLite | 35 | 58 | 24 | - | – | |
| MobiDBLite | 41 | 58 | 18 | - | – | |
| Pfam | 310 | 658 | 349 | 8.6E-98 | ||
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 316 | 341 | 26 | - | – | |
| Phobius | 342 | 360 | 19 | - | – | |
| TMHMM | 343 | 365 | 23 | - | – | |
| Phobius | 361 | 387 | 27 | - | – | |
| TMHMM | 369 | 391 | 23 | - | – | |
| Phobius | 388 | 480 | 93 | - | – | |
| Phobius | 481 | 502 | 22 | - | – | |
| TMHMM | 484 | 506 | 23 | - | – | |
| Phobius | 503 | 672 | 170 | - | – | |
| Gene3D | 503 | 624 | 122 | 3.1E-7 | ||
| SUPERFAMILY | 534 | 617 | 84 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0384200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…