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LotjaGi2g1v0384600.1

Overview

Field Value
Gene ID LotjaGi2g1v0384600
Transcript ID LotjaGi2g1v0384600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|I1J8P1|I1J8P1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0384600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:88099015..88100992) extracted from Lotus japonicus Gifu genome v1.2.

AAGAAACTTGCACTTTAGTAATAATCCATAGACCCTTTCACCCCTCATTCATTACTTTACCAAACTCCCTATCTCTTCTT CTCATGTTTCCCTTGCCTTCATCCTTCACCACCATTCCTCTCTCAACCACATCCCATTCCCATTCCCATTCCCATTCCCC TCAGGTATTCACTCACTCTCTCTGTCTCTTCTCTGCAACCATCTCAATTTTATGGCTCTTTGTGAATTTTTTGCATATAT AAATATTGGGTCTCAATTTTTATTTATATTTTTAATTTTTAATTTTTCTGTCAGGTTGAAACAGAAGAAATGGAGGCTGC TTTGAAGACCAGTTTCAGAAAAGAAATGGTCATTCCCCAAGCTTTCATGGAGGAGCTGTCAGGGTTCAACGGAGGTCAAA ATGACGACTTCTCCGTTGACGACCTTCTTGACTTCTCCCACGCCGTGGAAGAAGAAGAACCAGAACAACAACAGCAAAAG GTAGAACAAGAACACTCTGCTTCTGCTTGTGTCTCCCTTCAACAATCCCGTGAAATTTCCAAACCCGCCGCCACCAGTAA CCACCACCCTTTCAAAGACGAATTTCCCACCGGCGAGCTCACTGTTCCGGTACTATTTTCCTTCTTTCTTTCTCATTCAA CTTTTTCTTGGTTGTTCTGTTTCGGTGTTGACGAAAGTTATTACAGGTGGATGATGTAGCGGACTTGGAGTGGCTGTCTC ATTTCGTTGAGGATTCTGAATTTTCTGCCGCCGCTGCCTTCCCGGCCGCCGTAGCCTTACCGGTGAACCCAAAGAAGGAG GTGAAGACCGAGCCGGAACCAGAAACCCCGGTTTTTGCCCAGCCCCGTTTCAGAACTTCGGTTCAGACCAAGGCGAGAAG CAAGCGAACGAGGAATGGTGTTCGGGTTTGGCCACTCGGGTCACCGGAGACTTCCTCCAGTTCAACCACCACCTCGTCTT CCTCTTCGTCTCCTTCCAGCCCCTTGCTGATGTGCACCAGTTTTCCCCTGAGCGGCGAGCAGGTTTGCTCGGCGGCGGCA AGGCCTCCTCCGGCGAAGAGACCGAAGAGAATCCGAAACTCCTGTTCCGACCAGGCGGCGCCACGGCGGTGCAGCCATTG CGGCGTGCAGAAGACCCCACAGTGGAGGACTGGGCCACACGGAGCGAAAACGCTCTGCAATGCTTGTGGGGTCCGGTTCA AGTCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGCAGCCCCACATTCTCCAGTGAATTGCACTCAAACCACCACCGG AAAGTCTTGGAGATGCGGCGGAAGAAGGAGGAGGGTGAAGTTGAAACCGGTTTGTCAACTGTTATTCCCAGTTTTTGATT TTATTTAATTTTAATTAGAAAAAAAAAACTAGGTAGAAAAAGTAGCACAGACTTTAACCCGGTTCTATGGGACCCGACCC GAGTTAGTGTACACAATTTTCCCCTCTTTGCATTGAGTGCGGTAGGTGTTAGGCTTTGTAACTGTTTAGGAGACTTTGAT GATATGCAACTCTTTTTAGTTTTGAATTACTTTTTTTTTCTTCTTAGGTTATTTAATTTTGAATTTATTTATTTTTCGGT TTCATTATTATGAATGTTATGGTAGTGGGGTGCGTTAGTGGTTTCAAAATGAAACTGTTTTTGAGGTTGCTTTGCTTTGC CGTTGAAAGGCATGAACTTCGTGAACAAACACAACACACACAAAGTGAAGTGTTTGAAACTGGTTATTATCGTGTCGTGA GATAGACGCACTTTGGGAACCTCAAACTGCACGAGATTGATGATTCCAATATTGTACGTACGGCCCCTGAACCTTTTCCT ATTGCTTGCGGGTCCGATTCAAGTCGAGTCGCGTCCTCGTGAATGTAATTGTGTCTGCAAAGTTTTATCGCTGATAGTAA TCTTACTCTCGGCTCGAGCAAGGTGTTTGAGGCAACCGGTTCAAATTGAGTGTATGTG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0384600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTCCCTTGCCTTCATCCTTCACCACCATTCCTCTCTCAACCACATCCCATTCCCATTCCCATTCCCATTCCCCTCA GGTTGAAACAGAAGAAATGGAGGCTGCTTTGAAGACCAGTTTCAGAAAAGAAATGGTCATTCCCCAAGCTTTCATGGAGG AGCTGTCAGGGTTCAACGGAGGTCAAAATGACGACTTCTCCGTTGACGACCTTCTTGACTTCTCCCACGCCGTGGAAGAA GAAGAACCAGAACAACAACAGCAAAAGGTAGAACAAGAACACTCTGCTTCTGCTTGTGTCTCCCTTCAACAATCCCGTGA AATTTCCAAACCCGCCGCCACCAGTAACCACCACCCTTTCAAAGACGAATTTCCCACCGGCGAGCTCACTGTTCCGGTGG ATGATGTAGCGGACTTGGAGTGGCTGTCTCATTTCGTTGAGGATTCTGAATTTTCTGCCGCCGCTGCCTTCCCGGCCGCC GTAGCCTTACCGGTGAACCCAAAGAAGGAGGTGAAGACCGAGCCGGAACCAGAAACCCCGGTTTTTGCCCAGCCCCGTTT CAGAACTTCGGTTCAGACCAAGGCGAGAAGCAAGCGAACGAGGAATGGTGTTCGGGTTTGGCCACTCGGGTCACCGGAGA CTTCCTCCAGTTCAACCACCACCTCGTCTTCCTCTTCGTCTCCTTCCAGCCCCTTGCTGATGTGCACCAGTTTTCCCCTG AGCGGCGAGCAGGTTTGCTCGGCGGCGGCAAGGCCTCCTCCGGCGAAGAGACCGAAGAGAATCCGAAACTCCTGTTCCGA CCAGGCGGCGCCACGGCGGTGCAGCCATTGCGGCGTGCAGAAGACCCCACAGTGGAGGACTGGGCCACACGGAGCGAAAA CGCTCTGCAATGCTTGTGGGGTCCGGTTCAAGTCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGCAGCCCCACATTC TCCAGTGAATTGCACTCAAACCACCACCGGAAAGTCTTGGAGATGCGGCGGAAGAAGGAGGAGGGTGAAGTTGAAACCGG TTTGTCAACTGTTATTCCCAGTTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0384600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFPLPSSFTTIPLSTTSHSHSHSHSPQVETEEMEAALKTSFRKEMVIPQAFMEELSGFNGGQNDDFSVDDLLDFSHAVEE EEPEQQQQKVEQEHSASACVSLQQSREISKPAATSNHHPFKDEFPTGELTVPVDDVADLEWLSHFVEDSEFSAAAAFPAA VALPVNPKKEVKTEPEPETPVFAQPRFRTSVQTKARSKRTRNGVRVWPLGSPETSSSSTTTSSSSSSPSSPLLMCTSFPL SGEQVCSAAARPPPAKRPKRIRNSCSDQAAPRRCSHCGVQKTPQWRTGPHGAKTLCNACGVRFKSGRLLPEYRPACSPTF SSELHSNHHRKVLEMRRKKEEGEVETGLSTVIPSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 - –
MobiDBLite
mobidb-lite
1 23 23 - –
PANTHER
PTHR45658:SF16
24 355 332 1.3E-125 –
PANTHER
PTHR45658
24 355 332 1.3E-125 –
PIRSF
PIRSF016992
33 352 320 8.1E-80
IPR016679
MobiDBLite
mobidb-lite
79 128 50 - –
MobiDBLite
mobidb-lite
90 112 23 - –
MobiDBLite
mobidb-lite
170 230 61 - –
MobiDBLite
mobidb-lite
209 230 22 - –
Gene3D
G3DSA:3.30.50.10
263 340 78 1.0E-12
IPR013088
ProSiteProfiles
PS50114
268 304 37 12.084
IPR000679
SMART
SM00401
268 322 55 7.4E-17
IPR000679
SUPERFAMILY
SSF57716
270 331 62 7.13E-14 –
CDD
cd00202
273 321 49 6.76311E-15
IPR000679
ProSitePatterns
PS00344
274 299 26 -
IPR000679
Pfam
PF00320
274 308 35 1.5E-16
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0045893
Biological process Positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0384600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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