Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0391700 |
| Transcript ID | LotjaGi2g1v0391700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G38150.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SZL5|PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150; TrEMBL-Plants: tr|I3S7X9|I3S7X9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0391700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88761113..88763642) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGTTAGGGTATGCAGTGCTGTGATTTCCCCTTTCATTTCTTCTTCACACTCACTCACTCACCACTCAGTCTATTCAG CAATACATTTCGTGCGATTCGGTACCACATTTTCTTCTTCGAAACTTTTCATACTGTATCTGCTATTATTCTCTTCATTT TCTAGAATCTCTAGTGTTCTGATTTTTTTTATTTTGTAGAAAATTGCATTCAACCTTTGATTTTGACCTCTGTTATTATG ATTTAAGTAAGTAACACTGTTTTATATTCAATTAAGGTGGATTACAGATTTTGAATGTGGCTTTGAGTTAACCCTAGAAC TAGCATCAATTGCAAATACTAGCTGAGTATTGAATTCAAAGCAAATGGTAAATTGCAGACACTTTGTGATGATAATGTTT TTATTTATTTATTTATCTGGGGATGGGTTTTTAACTTGATGCTTGGTGCAAATTCTGAATAGGTCCTCATGCCTGCATTG CTAAGACGGGTTCATAAGCCTGTATCCTCCTCTCAGATGGAAAGGCTAGTTTCTCTTTTAAATTCGAAACAACCTGTACG CCATTTTAGCTTCACTGATGATTGCAGTGGTGACATCAAACAACTTATGGGAGAATCTGATGATGTTTCTATTCATAAGT TAGACCCACATTTTAGTGATAGTAGCCGGGAAGGATCAGAACCAATTCCAAATAGGGCTTTGAGAGGTACACAGCCAGTT AATCCGCATAGTCGAGAATACAATAGAGGTTCTCGTTCCTCTCGTCCGAGATTCGATGGCAACCGTGGCAGACCTGATGA CGTGGAGATGACAAATAAGTCTTCCCAAACTGATATTGGATTTCAGGGCCGAAATATGTCGGACACTAATAAGGTTGTGA ATAAGTTAGGAGACAGTTTCCTTGATAAGTTCAAGCTTGGTTTTGATAATAAAGCAGGGAATTCCTCGGAGGTTGCAGCA AGCAACCTATCTGAAGAGGCTAAGAGCGCAAATTCCAATCAACCAGCTATGCCTGAGGATGCCGATGAAATTTTCAAGAA GATGAAGGAAACTGGTCTTATCCCCAATGCGGTGGCTATGCTTGATGGTCTATGTAAAGATGGTCTTGTTCAAGAAGCCT TGAAGCTTTTTGGTTTGATGAGAGAAAAGGGAACCATTCCAGAGATTGTCATTTACACCGCTGTGGTGGAGGGCTACACT AAGGCTCACAAGGCTGATGATGCCAAAAGGATTTTCAGGAAAATGCAGAGTAATGGAATTTCACCCAATGCTTTCAGTTA CACGGTTCTTGTACAAGGACTCTGCAAATGTAGTAGATTACAGGATGCTTTTGAATTTTGTGTGGAGATGTTAGAAGCTG GTCATTCTCCAAATATGACAACTTTCGTTGACCTTGTAGATGGTTTCGTCAAGGAACAAGGGGTTGCAGAAGCAAAGGGT GCTATCAGAACATTAATAGAAAAGGGTTTTGTTGTTAATGAGAAAGCTGTTAAGGGGTTCTTGGACATGAAAAAACCATT TTCACCCTCTGTTTGGGAGGCTATCTTTGGGAAGAAAGCCCCACAGATGCCATTTTAAATATCTTTGCAGACTATGTAAG TTTCTATCTTAATTATTCTACCATTATGCTTGACTACCTTTTGCCCTTTATGTAATTCATTGTTACTTCAATGTGCAACC ATTAAAATTTTCTAAAAAAGACTGACTAGTTAGTATTTCTTGATAGTGAGCAGAGCACTGTTTTCATTTTTAAATGTACC ACTAGTTCCAAATTAGTTCGTGGATGATTGATTCCTCATATTTATTTATATGGTAGTATCTCCTTATTGATGTATTGTGA TGAGGATTCATTTATTGGTTATAATGTTCCTGGGAAGTTGGACTTACCGCAGATGGTTATTTTGGGGATAGATCCTAAGT TCTAGTCAGAAAGACTACTTATTGATGTGTTGCAAAAGTGAAGAACAAGTTGTATGATGAATTGTATTTGAAGCGATGTG TTGTTTGGGATCATTTGAAGCCCAACTTTGTTGTTTTATGATGTATGACAACATACTTTTGATTTTGTTACAATTGATGC TTCTTGCTTGGGGCTGCTACCTTCAGAAGATTTCATGCAATCAGCCAATCACTGTTGTTGATTAAGGAATTTGATCAAAA TGAAATACAGTGGTGTTGCAGTGATAACCCAGGTACATAGGCCATAACCAGATAATTATCAGTGTTTCTTACTCTCTTTG CATTGTGCAATTAGCGGAATTGAACCAACATGCACACACGCGCACATGTCGAAGTAGGGTCTTCATACTCCCATGGTTTT AATAATAGACAGCAAAACCAGTTTGAGACAGTTTGTTGAGTTATTCACTTATTTGTGATCAGGATTTAGTTATAAAAGCA GTTGCTACTTCTCTATGCTTTGTATACAATCCAATTGAGGACACTATTTTGAGGAACAACATTCCTCTGTCTTTATTTTC TAGTTCTCTGGTCTTTCAACAATAAATTCATCACTAGAACATGTACCCAA
CDS sequence (LotjaGi2g1v0391700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCCTCATGCCTGCATTGCTAAGACGGGTTCATAAGCCTGTATCCTCCTCTCAGATGGAAAGGCTAGTTTCTCTTTT AAATTCGAAACAACCTGTACGCCATTTTAGCTTCACTGATGATTGCAGTGGTGACATCAAACAACTTATGGGAGAATCTG ATGATGTTTCTATTCATAAGTTAGACCCACATTTTAGTGATAGTAGCCGGGAAGGATCAGAACCAATTCCAAATAGGGCT TTGAGAGGTACACAGCCAGTTAATCCGCATAGTCGAGAATACAATAGAGGTTCTCGTTCCTCTCGTCCGAGATTCGATGG CAACCGTGGCAGACCTGATGACGTGGAGATGACAAATAAGTCTTCCCAAACTGATATTGGATTTCAGGGCCGAAATATGT CGGACACTAATAAGGTTGTGAATAAGTTAGGAGACAGTTTCCTTGATAAGTTCAAGCTTGGTTTTGATAATAAAGCAGGG AATTCCTCGGAGGTTGCAGCAAGCAACCTATCTGAAGAGGCTAAGAGCGCAAATTCCAATCAACCAGCTATGCCTGAGGA TGCCGATGAAATTTTCAAGAAGATGAAGGAAACTGGTCTTATCCCCAATGCGGTGGCTATGCTTGATGGTCTATGTAAAG ATGGTCTTGTTCAAGAAGCCTTGAAGCTTTTTGGTTTGATGAGAGAAAAGGGAACCATTCCAGAGATTGTCATTTACACC GCTGTGGTGGAGGGCTACACTAAGGCTCACAAGGCTGATGATGCCAAAAGGATTTTCAGGAAAATGCAGAGTAATGGAAT TTCACCCAATGCTTTCAGTTACACGGTTCTTGTACAAGGACTCTGCAAATGTAGTAGATTACAGGATGCTTTTGAATTTT GTGTGGAGATGTTAGAAGCTGGTCATTCTCCAAATATGACAACTTTCGTTGACCTTGTAGATGGTTTCGTCAAGGAACAA GGGGTTGCAGAAGCAAAGGGTGCTATCAGAACATTAATAGAAAAGGGTTTTGTTGTTAATGAGAAAGCTGTTAAGGGGTT CTTGGACATGAAAAAACCATTTTCACCCTCTGTTTGGGAGGCTATCTTTGGGAAGAAAGCCCCACAGATGCCATTTTAA
Protein sequence (LotjaGi2g1v0391700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLMPALLRRVHKPVSSSQMERLVSLLNSKQPVRHFSFTDDCSGDIKQLMGESDDVSIHKLDPHFSDSSREGSEPIPNRA LRGTQPVNPHSREYNRGSRSSRPRFDGNRGRPDDVEMTNKSSQTDIGFQGRNMSDTNKVVNKLGDSFLDKFKLGFDNKAG NSSEVAASNLSEEAKSANSNQPAMPEDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYT AVVEGYTKAHKADDAKRIFRKMQSNGISPNAFSYTVLVQGLCKCSRLQDAFEFCVEMLEAGHSPNMTTFVDLVDGFVKEQ GVAEAKGAIRTLIEKGFVVNEKAVKGFLDMKKPFSPSVWEAIFGKKAPQMPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 58 | 133 | 76 | - | – | |
| MobiDBLite | 95 | 118 | 24 | - | – | |
| MobiDBLite | 119 | 133 | 15 | - | – | |
| Gene3D | 185 | 354 | 170 | 2.0E-32 | ||
| PANTHER | 186 | 337 | 152 | 5.7E-36 | – | |
| ProSiteProfiles | 200 | 234 | 35 | 9.438 | ||
| Pfam | 206 | 231 | 26 | 1.3E-6 | ||
| TIGRFAM | 206 | 234 | 29 | 1.4E-6 | ||
| Pfam | 234 | 283 | 50 | 3.9E-14 | ||
| ProSiteProfiles | 235 | 269 | 35 | 11.718 | ||
| TIGRFAM | 237 | 271 | 35 | 2.4E-8 | ||
| ProSiteProfiles | 270 | 304 | 35 | 11.608 | ||
| TIGRFAM | 272 | 305 | 34 | 4.6E-7 | ||
| ProSiteProfiles | 305 | 339 | 35 | 7.114 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0391700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…