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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0393100 |
| Transcript ID | LotjaGi2g1v0393100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT4G36740.1 homeobox protein 40; Swiss-Prot: sp|O23208|ATB40_ARATH Homeobox-leucine zipper protein ATHB-40; TrEMBL-Plants: tr|A0A0B2SB91|A0A0B2SB91_GLYSO Homeobox-leucine zipper protein ATHB-40; Found in the gene: LotjaGi2g1v0393100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89029725..89031642) extracted from Lotus japonicus Gifu genome v1.2.
GCAGTGAGCATTGCAGAGTGAGAGAGAGAAACAGTAGTACAATGAATCATCGACCCATTCATCAAGAGCAAATGATGCTT ATGTCTCAATTATACCCTGCCGCTACATACAATCAAATCATTTCTCAGCAGCAAGGTTAGCATTCAATAGCATCAAACCT CCAACTTCTTTCTTATTTTAACATTTTCTTATCAATTCTATTGCTAGCTTCATTAATTAACTTAATTTGGAAACAAATTT GTTGTGATCTAGGGGAGAAGAAGCAGCCGCGACGACGCCGTAACAAGAAGAACAGAGGAGGAGAAAATGGAAGCGCTGAA GCCAACAAAAAGAGGAAACTCAGCGAGGAACAAGTGAATCTACTGGAGCAAAATTTTGGTCACGAGCACAAGCTCGAGTC AGAGAGGAAGGACAAGCTGGCAGCGGAGCTCTGTTTGGATCCAAGACAAGTAGCGGTTTGGTTCCAAAACAGAAGAGCAA GGTGGAAGAACAAGAAATTGGAGGAAGAGTACTCCAATCTCAAGAAATCACACGATGCCACCACCTTGGAGAAATGTCAC CTGGAGAGTGAGGTATACATACCCCTTCTACTTTCTCATACTATTTTAATTATCACATCTAATAATTAAACTAAGTTTAT TCTTTGGTTTTCAAGAAAATTGCTTCAATTACTTTGTAACCAAGCATGGTTTTGCACTGATCAATACTAGTTGTTTTAAA AAAAAAATCTCACCCTGGTACGTCAATTTCGGGCAAAGCATGCTAAGATCGATGTTTAGTATTTTACTCTACAATATTAT TTTACTCAAAAATTGTTAATCCCACAACTGTTGAAAGAGAGTAGCACCCGCATGCAACCGGTTCTTCAGGACAAAGCAAA ACGAAACAGAGACCCACCTAGCACTTGAACGTGCAGATGAAGAAAAATCCAAGTCGTGTCTAAGTAGTTCTCAGCCATAG GATAGGATAAGTCATGTGGAAAAATCACCAACAAGAGGAGCAGAAAACTGCCACCTTAGTAGACAACAAAAGTCACTGTT TCTTCTTCTTTTTTATTTTTTTTCAACAAGTTCCGTACATTTTTATTAGGATAACTCCTATTGGGCCTCACACATGGCCC ACTAACGAAGAAAAATCAGTGCCTTGACATGTGTTCCCACGTGAAGGACCATTAGCGTCTAATGAAAACCCACCATTACA GTTTCTTAACATTTTTTTTTTAAAAAAAAAATACTTAACCTTTTATCTTTGGTAACATAACATTTTAATTTCTAACACCT AGCTAACATGTGGTAAAAATGCTTGTAGGTGTTCAAGCTGAAACAACAACTATCTGAGGCGGAGAGTGAGATTCAACGAC TGCGGATGGAGGGGGCTGATAAAGTTCTTTCGAGCAACAGCTGCAGTTCCTCACAGTCACATTCAATGGAAGCGGTGGAG CCGCCATTTCTGGGAGAGTTTGTGGTTGATGGCTATGATGATGATGTGTTCTATGTGTCACCAGAGGCACAATTAATCAA TGCTTATAATGAATGGATTAATCATTTCATGTAGTTATACCATTAGAACTAATTAATTTAGCATTTGTAGATAATTATGT GAATATATGACGATGCAATGTAGATTAATTTTTCTTTTTGAAAAGGCAATGTATATTAATTGCTTCTACCTAATGGGTGT GTTTGATTATGTTTGGACTTTGGATATAGTAGTATAGTATCAATTAACATAATATATAATTTGTATTTTGACCCTCAAAT TGCTGTACTAGTATATCTTTGTTAGTTGCGGAATGCTAGTTTATGTTAGCTATGAATATAGCTGTGGTTGTCAAAAAAAA AAGAAAGAATATAACTGTGCCGTGTGTTTCTTTCACAACAGAATAATAATTGAACTTACCAATACTAGCTTTCATTTG
CDS sequence (LotjaGi2g1v0393100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCATCGACCCATTCATCAAGAGCAAATGATGCTTATGTCTCAATTATACCCTGCCGCTACATACAATCAAATCAT TTCTCAGCAGCAAGGGGAGAAGAAGCAGCCGCGACGACGCCGTAACAAGAAGAACAGAGGAGGAGAAAATGGAAGCGCTG AAGCCAACAAAAAGAGGAAACTCAGCGAGGAACAAGTGAATCTACTGGAGCAAAATTTTGGTCACGAGCACAAGCTCGAG TCAGAGAGGAAGGACAAGCTGGCAGCGGAGCTCTGTTTGGATCCAAGACAAGTAGCGGTTTGGTTCCAAAACAGAAGAGC AAGGTGGAAGAACAAGAAATTGGAGGAAGAGTACTCCAATCTCAAGAAATCACACGATGCCACCACCTTGGAGAAATGTC ACCTGGAGAGTGAGGTGTTCAAGCTGAAACAACAACTATCTGAGGCGGAGAGTGAGATTCAACGACTGCGGATGGAGGGG GCTGATAAAGTTCTTTCGAGCAACAGCTGCAGTTCCTCACAGTCACATTCAATGGAAGCGGTGGAGCCGCCATTTCTGGG AGAGTTTGTGGTTGATGGCTATGATGATGATGTGTTCTATGTGTCACCAGAGGCACAATTAATCAATGCTTATAATGAAT GGATTAATCATTTCATGTAG
Protein sequence (LotjaGi2g1v0393100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHRPIHQEQMMLMSQLYPAATYNQIISQQQGEKKQPRRRRNKKNRGGENGSAEANKKRKLSEEQVNLLEQNFGHEHKLE SERKDKLAAELCLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHDATTLEKCHLESEVFKLKQQLSEAESEIQRLRMEG ADKVLSSNSCSSSQSHSMEAVEPPFLGEFVVDGYDDDVFYVSPEAQLINAYNEWINHFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 206 | 199 | 8.0E-76 | – | |
| PANTHER | 8 | 206 | 199 | 8.0E-76 | – | |
| MobiDBLite | 28 | 62 | 35 | - | – | |
| MobiDBLite | 46 | 62 | 17 | - | – | |
| Gene3D | 51 | 120 | 70 | 1.3E-17 | – | |
| Coils | 52 | 72 | 21 | - | – | |
| ProSiteProfiles | 52 | 112 | 61 | 16.844 | ||
| SMART | 55 | 116 | 62 | 9.3E-16 | ||
| SUPERFAMILY | 56 | 121 | 66 | 5.99E-18 | ||
| CDD | 57 | 113 | 57 | 1.69774E-14 | ||
| Pfam | 57 | 111 | 55 | 3.4E-16 | ||
| ProSitePatterns | 87 | 110 | 24 | - | ||
| Coils | 104 | 131 | 28 | - | – | |
| Coils | 139 | 159 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0393100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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