Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0393800 |
| Transcript ID | LotjaGi2g1v0393800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily transporter; TAIR: AT4G36790.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9GQQ0|SPIN_DROME Protein spinster; TrEMBL-Plants: tr|I1J8Y5|I1J8Y5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0393800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89145623..89147784) extracted from Lotus japonicus Gifu genome v1.2.
TTAGATTTTAGACCAACACACATCATTCATAGCAACTTAGAATAGCATATATCATTCTTTATGCATTTGGAAATTTCATT ATAAACTTCTAATTCTGTGATTTTGTGAAAAATGAGGGCCTAGACTACATCTTTAATTATTCACCTAACTTTGTCTGATA TTCTAATTTTTCTTCTTCTTTCCGTTCCTTTTATTTCAGTTCCTAATCTGAAATAATGGTTGCAGCCATGGCTCTTATCT CTTCTTCTTCTTTTCTAAGTTGGCCTCACCATAATTCTTTATCACAGGACAAAACAGATTTTTGGCGTGTCGCTCTCGCT CATTCTTATCAACCTGGCTGCTATTATGGAGCGTGCCGATGAAAATCTTCTTCCATCTGTCTACAAAGAAGTCAGTGAAG CATTTAATGCCGGACCGTCCGATTTGGGTTACCTCACATTCATAAGAAACTTTGTTCAGGGACTATCATCTCCACTGGCG GGTATACTTGTCATTAACTATGATCGCCCCACAATTCTCGCTATGGGCACGTTCTGCTGGGCTCTATCTACAGCTGCTGT GGGTGTTTGCCGCGATTTTATGCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGTTTGGCAATTGTGATTCCAGCAC TACAGTCTTTCATTGCTGATAGCTACATGGATGGAGTGAGAGGAACTGGGTTTGGATTACTAAGCCTTGTGGGTACCTTG GGGGGCATAGGAGGTGGTGTTATGGCTACTGTCATGGCTGGTCAGCAGTTTTGGGGTATACAAGGTTGGAGATGTGCCTT CATTTTGATGGCAACTTTGAGTGCATTGATTGGAACCCTTGTTTTACTATATGTGGTTGAGCCAAAAAAAAGATTTACCA CCAATGTTGATGCTAGTCAGAGTTCAGATAGGTAATTACATATTATTAGCATGTTTGGATCAGTTTCTCTTTCAATCATA ATCAATTATGAAACCTAGAAGTTACTCACAGAAGCTCAATCCCATAACTGATTGTCTTCAGAATCAATTGTAGAAGGGTT ACATACTTACATGCATTATTACTAACACCGCCCATTTAGCATTTGGTACAACTTTTAGTACTTTTTGACCTCTTAAGTGC CTCCAAACTGTCATATTTTTTCATCCTCATGAATAATAACTGACAAATTACTGAATTCATTATATCTATTTGATTTGTAA CTATTGGTAAATTAACTTCCTGTGTTACCAGGGAAGACCCTATCTACAAAGGCAATGCTAGTGTAGCATCAATTTGGATG ACCTCTTGGGCAGCCATGAAAGCTGTGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAGGGCATTATTGGTTCACT ACCATGGACAGCCATGGTATTCTTCACAATGTGGTTTGAACTAATTGGTGAGAATCAATCCAAATTCTGTACATTGATAT TCTAAAGCAATTTTGCAATTTTGTGTTTTTCTAGCTCTTGAATTGCTACTTCACTACATTGATATTCAAACCTTATGAAT ACACCTGTACTTGCTAGATATGATGAACTGGTACATCGTGCAGGTTTTGATAATAATACTTCAGCAACCCTCCTCAGTCT TTTTGCTATTGGATGTGCCATGGGTTCCTTCTTTGGTGGATCAATAGCTGATCAATTGTCACGTGTCTACCCTCATTCTG GTCGAATCATGTGCGCACAGTTCAGTGCATTTATGGGTATTCCATTCTCATGGTTTCTTCTCAGGGTAATCCCCCAGTCA GTGAGTAGTTTTCTTACCTTTTCTGTCACCCTCTTTTTGATGGGTCTAACTATCAGCTGGAATGCAACGGCTGCAAATGG TCCTATGTTCGCCGAGGTAGTCCCGGTGAAGCACCGGACCATGATTTACGCATTTGATCGTGCTTTTGAAGGCTCATTTT CTTCTGTTGCTGCTCCCCTTGTTGGGATTCTTTCAGAGAAAATATTTGGATACAATGCAAAGTCTGTTGATCCCATCAAA GGATCTTCACCGGAGGCCCTTGCCTTGTCAAAGGGCCTTCTTTCAATGATGGTGATTCCATTTGGATTGTGCTGTTTGTG CTACACACCACTATATTATCTATTTAAGAAGGACCGTGAGAATGCTAGAATTGTAGCCCTGAAAGAGGAGGAGATGATGT AA
CDS sequence (LotjaGi2g1v0393800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCGTGCCGATGAAAATCTTCTTCCATCTGTCTACAAAGAAGTCAGTGAAGCATTTAATGCCGGACCGTCCGATTT GGGTTACCTCACATTCATAAGAAACTTTGTTCAGGGACTATCATCTCCACTGGCGGGTATACTTGTCATTAACTATGATC GCCCCACAATTCTCGCTATGGGCACGTTCTGCTGGGCTCTATCTACAGCTGCTGTGGGTGTTTGCCGCGATTTTATGCAG GTTGCATTCTGGAGAGCAATAAATGGCTTTGGTTTGGCAATTGTGATTCCAGCACTACAGTCTTTCATTGCTGATAGCTA CATGGATGGAGTGAGAGGAACTGGGTTTGGATTACTAAGCCTTGTGGGTACCTTGGGGGGCATAGGAGGTGGTGTTATGG CTACTGTCATGGCTGGTCAGCAGTTTTGGGGTATACAAGGTTGGAGATGTGCCTTCATTTTGATGGCAACTTTGAGTGCA TTGATTGGAACCCTTGTTTTACTATATGTGGTTGAGCCAAAAAAAAGATTTACCACCAATGTTGATGCTAGTCAGAGTTC AGATAGGGAAGACCCTATCTACAAAGGCAATGCTAGTGTAGCATCAATTTGGATGACCTCTTGGGCAGCCATGAAAGCTG TGATCAAAGTGAAAACATTTCAAATAATTGTCTTACAGGGCATTATTGGTTCACTACCATGGACAGCCATGGTATTCTTC ACAATGTGGTTTGAACTAATTGGTTTTGATAATAATACTTCAGCAACCCTCCTCAGTCTTTTTGCTATTGGATGTGCCAT GGGTTCCTTCTTTGGTGGATCAATAGCTGATCAATTGTCACGTGTCTACCCTCATTCTGGTCGAATCATGTGCGCACAGT TCAGTGCATTTATGGGTATTCCATTCTCATGGTTTCTTCTCAGGGTAATCCCCCAGTCAGTGAGTAGTTTTCTTACCTTT TCTGTCACCCTCTTTTTGATGGGTCTAACTATCAGCTGGAATGCAACGGCTGCAAATGGTCCTATGTTCGCCGAGGTAGT CCCGGTGAAGCACCGGACCATGATTTACGCATTTGATCGTGCTTTTGAAGGCTCATTTTCTTCTGTTGCTGCTCCCCTTG TTGGGATTCTTTCAGAGAAAATATTTGGATACAATGCAAAGTCTGTTGATCCCATCAAAGGATCTTCACCGGAGGCCCTT GCCTTGTCAAAGGGCCTTCTTTCAATGATGGTGATTCCATTTGGATTGTGCTGTTTGTGCTACACACCACTATATTATCT ATTTAAGAAGGACCGTGAGAATGCTAGAATTGTAGCCCTGAAAGAGGAGGAGATGATGTAA
Protein sequence (LotjaGi2g1v0393800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGILVINYDRPTILAMGTFCWALSTAAVGVCRDFMQ VAFWRAINGFGLAIVIPALQSFIADSYMDGVRGTGFGLLSLVGTLGGIGGGVMATVMAGQQFWGIQGWRCAFILMATLSA LIGTLVLLYVVEPKKRFTTNVDASQSSDREDPIYKGNASVASIWMTSWAAMKAVIKVKTFQIIVLQGIIGSLPWTAMVFF TMWFELIGFDNNTSATLLSLFAIGCAMGSFFGGSIADQLSRVYPHSGRIMCAQFSAFMGIPFSWFLLRVIPQSVSSFLTF SVTLFLMGLTISWNATAANGPMFAEVVPVKHRTMIYAFDRAFEGSFSSVAAPLVGILSEKIFGYNAKSVDPIKGSSPEAL ALSKGLLSMMVIPFGLCCLCYTPLYYLFKKDRENARIVALKEEEMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 56 | 56 | - | – | |
| ProSiteProfiles | 1 | 433 | 433 | 16.907 | ||
| PANTHER | 1 | 446 | 446 | 2.9E-245 | – | |
| PANTHER | 1 | 446 | 446 | 2.9E-245 | – | |
| CDD | 1 | 421 | 421 | 1.45329E-69 | – | |
| Gene3D | 4 | 180 | 177 | 3.2E-25 | – | |
| Pfam | 9 | 309 | 301 | 2.0E-25 | ||
| SUPERFAMILY | 11 | 434 | 424 | 2.09E-42 | ||
| TMHMM | 30 | 52 | 23 | - | – | |
| TMHMM | 57 | 76 | 20 | - | – | |
| Phobius | 57 | 75 | 19 | - | – | |
| Phobius | 76 | 81 | 6 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 82 | 103 | 22 | - | – | |
| Phobius | 104 | 114 | 11 | - | – | |
| Phobius | 115 | 138 | 24 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 139 | 149 | 11 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 150 | 171 | 22 | - | – | |
| Phobius | 172 | 219 | 48 | - | – | |
| Gene3D | 208 | 437 | 230 | 2.7E-13 | – | |
| Phobius | 220 | 244 | 25 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 245 | 255 | 11 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 256 | 275 | 20 | - | – | |
| Phobius | 276 | 286 | 11 | - | – | |
| Phobius | 287 | 307 | 21 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 308 | 313 | 6 | - | – | |
| Phobius | 314 | 333 | 20 | - | – | |
| TMHMM | 321 | 343 | 23 | - | – | |
| Phobius | 334 | 405 | 72 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 406 | 428 | 23 | - | – | |
| TMHMM | 406 | 428 | 23 | - | – | |
| Phobius | 429 | 446 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0393800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…