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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396500 |
| Transcript ID | LotjaGi2g1v0396500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxygen-evolving enhancer protein 1; TAIR: AT3G50820.1 photosystem II subunit O-2; Swiss-Prot: sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloroplastic; TrEMBL-Plants: tr|I3SU29|I3SU29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0396500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89402255..89404730) extracted from Lotus japonicus Gifu genome v1.2.
ATCCTATCGAAAATCTTACTCGCATCAGAGCCACCAAATAACACAAAATCCACTTGCTTGCTGCAAACTAGTTACTTTCA CATTAAAAAAGAAAAAACCAGAAACACTTTGGTGGCAACATCAGCAATGGCAACCTCATTGCAAGCTGCTGCTACTCTCA TGCAACCCACCAAGGTAGCTGCCATCACTAGTACTCGCAGCAGCTCCACTTTACAACTTAAGCCCACACAATCCATTTCT AAGGCTTTTGGTTTGGAATCCACCGGAGCTAAGCTCACATGCAATCTTCAGGATTTTGCTAACAAGTGTGCTGAGACCGC CAAAATTGCAGGATTTGCCCTTGCCACCTCTGCTCTCGTTGTCTCTGTATGTTCTGCGTTTTTGACTCTTTCCTATTTCT TCTTTTTATTTGATTGAACTTTGATATACATAAAATAACATCATAATTTACAATCTTTAACTTGATCAATCATGATTAGT TAAACATTCTGTTTAGTTGTAATCAGTTAGAAAGTTAGAACTTAGAAATTGTGTTAGAAGTTTGCTAGATAGATCTGTTT CAAGGTTCAGCTCACACATGTCACATGTGAGTTAGTTAGAATGAGTCAGTTATTTGTCTATGCCTCTCACTCATTGTATG TATATAATGTAATTCACTCAACTGTGAATAGATTGGGCTTCATTTTTACCATTTCTCTGTTTAACAATCATGACAAAACA AATCAGGTATCTTCTGTTTAATAACATTGTGCATGTTTGTGGAAAAAACAAATTACAATTGATTCTCAAACCAGAATCAA TTCTGGAAAGAAGCTTCTTCTGAGTAGCTTGTTGAATTCAGAATTGATTGTGAAGAAAGAAAAACTGATCCAGAACAGCA GTTTTGAAATTCTGAAATAAAAGCTCCATCATACCAACTGGCAACTGCTGCTTCTATTTTCATGATAATTTCATATTTTA GCCATGTTTGGATACGCTGAAAAAAACATCAGCGAATACAAAACCATGGTAGACAGAAGCATAAGCTTAAGGAAGTTGCT TCCATCCACGGTGATTTTGGCTTTCTATCATGTATTGATGCAAACATGCACTTATACATTATTTCTTTTTCAAAAACACA CTTCAATGGAACCATATGATCTAACATACAAATGGATTTGGTTGTATGAGAGGATACAATTCCTTTCCAATTGGATATAT GTTGTTCAATGCATGGAGTTGATTTGCTAAAACTGAGAGTCTGAGACATATTTACTAGTTCATGTTATGGACTTGTTATC TCATGATTCTATATATATATTGAGTGGGGATTGCTAATCATGTGTATGTACATAACTGTCTAAAAGTCTTTTGCAATTAA CTGATATTCAGGGAGCAAGTGCTGAAGGTGTCCCAAAGCGGCTGACCTTCGATGAAATCCAGAGCAAGACATACATGGAA GTGAAGGGAACTGGAACTGCTAACCAGTGCCCAACCATTGAAGGTGGAGTGGACTCATTCGCGTTCAAGGCCGGGAAATA TAGCGCAAAGAAGATCTGCCTCGAACCCACTTCATTCACAGTGAAGGCAGAGGGAGTGACCAAGAACTCCCCTCTCGATT TTCAAAACACTAAGCTCATGACTCGTCTGACCTACACTCTTGATGAGATTGAAGGACCCTTCGAGGTTTCTCCCGATGGA ACAGTGAAATTTGAGGAGAAAGATGGCATTGACTATGCTGCTGTCACAGTCCAGCTCCCCGGAGGCGAGCGCGTGCCTTT CCTCTTCACCGTCAAACAGTTGGTGGCATCCGGGAAGCCTGAGAGCTTTAGTGGGGACTTCTTGGTGCCTTCTTACCGTG GTTCGTCTTTCTTGGACCCCAAGGGACGGGGCGCCTCGACCGGGTATGACAATGCTGTTGCATTGCCTGCTGGTGGCAGA GGAGATGAGGAAGAACTTGCTAAGGAAAATAACAAGAGTGCTTCATCTTCCAAAGGGAAAATCACCTTGAGCGTTACGCA GAGCAAGCCTGAAACTGGGGAGATTATTGGTGTGTTTGAGAGCATTCAGCCATCTGATACTGATTTGGGTGCTAAAGCTC CTAAGGATGTGAAGATCCAAGGAGTCTGGTATGCTCAGCTTGAGTCATAGAGGCTACTTTTTAATGCTGTAATTTTAATT TGTTGGATTTGATTTTTGTGTAATGACCCCAGTTGGTGAAGAACTGTGAGCATTATCATGTTTATATTATAATGCTTAAA ATATCTAAATAACGTTTTGGAACATTCATTTTTCTGGTGGCAATACCAACATATACATGTTCCTGATGTGTATACACAGA AGATATATGCTACTACTAGGTCAATCTAAACATCGACATATGTAGATGATTGGAAATGAAACAAAACTAAGCTCAGTTTC GTGACATTTGGATCATGTATTAGGATTTAGGTGGATTGTGAAGAAAAGCAAATAAATGCAATTACATCAACTGCTC
CDS sequence (LotjaGi2g1v0396500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCTCATTGCAAGCTGCTGCTACTCTCATGCAACCCACCAAGGTAGCTGCCATCACTAGTACTCGCAGCAGCTC CACTTTACAACTTAAGCCCACACAATCCATTTCTAAGGCTTTTGGTTTGGAATCCACCGGAGCTAAGCTCACATGCAATC TTCAGGATTTTGCTAACAAGTGTGCTGAGACCGCCAAAATTGCAGGATTTGCCCTTGCCACCTCTGCTCTCGTTGTCTCT GGAGCAAGTGCTGAAGGTGTCCCAAAGCGGCTGACCTTCGATGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAAC TGGAACTGCTAACCAGTGCCCAACCATTGAAGGTGGAGTGGACTCATTCGCGTTCAAGGCCGGGAAATATAGCGCAAAGA AGATCTGCCTCGAACCCACTTCATTCACAGTGAAGGCAGAGGGAGTGACCAAGAACTCCCCTCTCGATTTTCAAAACACT AAGCTCATGACTCGTCTGACCTACACTCTTGATGAGATTGAAGGACCCTTCGAGGTTTCTCCCGATGGAACAGTGAAATT TGAGGAGAAAGATGGCATTGACTATGCTGCTGTCACAGTCCAGCTCCCCGGAGGCGAGCGCGTGCCTTTCCTCTTCACCG TCAAACAGTTGGTGGCATCCGGGAAGCCTGAGAGCTTTAGTGGGGACTTCTTGGTGCCTTCTTACCGTGGTTCGTCTTTC TTGGACCCCAAGGGACGGGGCGCCTCGACCGGGTATGACAATGCTGTTGCATTGCCTGCTGGTGGCAGAGGAGATGAGGA AGAACTTGCTAAGGAAAATAACAAGAGTGCTTCATCTTCCAAAGGGAAAATCACCTTGAGCGTTACGCAGAGCAAGCCTG AAACTGGGGAGATTATTGGTGTGTTTGAGAGCATTCAGCCATCTGATACTGATTTGGGTGCTAAAGCTCCTAAGGATGTG AAGATCCAAGGAGTCTGGTATGCTCAGCTTGAGTCATAG
Protein sequence (LotjaGi2g1v0396500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSLQAAATLMQPTKVAAITSTRSSSTLQLKPTQSISKAFGLESTGAKLTCNLQDFANKCAETAKIAGFALATSALVVS GASAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIEGGVDSFAFKAGKYSAKKICLEPTSFTVKAEGVTKNSPLDFQNT KLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGSSF LDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEIIGVFESIQPSDTDLGAKAPKDV KIQGVWYAQLES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 332 | 332 | 2.0E-187 | – | |
| PANTHER | 1 | 332 | 332 | 2.0E-187 | ||
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 332 | 313 | - | – | |
| Pfam | 98 | 330 | 233 | 1.2E-97 | ||
| SUPERFAMILY | 99 | 331 | 233 | 3.3E-99 | ||
| Gene3D | 130 | 331 | 202 | 1.9E-97 | – | |
| Gene3D | 237 | 275 | 39 | 1.9E-97 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosystem II assembly | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. | ||
| Molecular function | Oxygen evolving activity | Catalysis of the reaction: 2 H2O = O2 + 4 H+ + 4 e-. The evolution of oxygen from oxidizing water is carried out by the oxygen evolving complex in photosystem II of plants. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle. | ||
| Biological process | Photosystem II stabilization | The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. |
Expression pattern of LotjaGi2g1v0396500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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