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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0399300 |
| Transcript ID | LotjaGi2g1v0399300.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|A0A1J7G317|A0A1J7G317_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89622984..89626556) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTGGACCACATTGCAGCACCTTGATCTCCGCCATGTAGGCCGTGGAGACAAACCTCTGCAGCCTCACGCTGCTTC CTTCCACCCTCATCAGGCACTCGTCGCTGTCGCCATCGGAACCTACATTGTCGGTCAGTAACTCAATCCACTATCACTCA CTCTCTTCTTCTTGAGGAACCTAATGCACTGTCGTTAAGCAATTCGGAAACCCTCAAATGCTGAGAATGTGATTCTTATC GTTACTGTTTTGAAATGCGCGCGATTCTAATTACGAACGAGGTCACGAATGTGTGTATGGTGGAAAATTAATCGTTAATT TGTTCTCACTGCAATTTATTTGTTCTTCCTTGAATGCCACGTTTCCTGGTTAATAAATTAGGACTTTGATATTGACTATT GAGGCTTTCATTTCTGAAGGCTTATACTCATAATTCGTAAACGCAATCCTCTGTGTTGATCCGTTACGTCTGAATCATTA GTTTCATTTGAGGAGTAGTGTTACTCTGGTAAAATTTTGTTACTGATTGATTTGTTCCAATGCATGCAGAATTTGATGCA TTGACAGGAAGTAAGATTTCTTCTCTTGACATAGGTGCACCTGTTGTGCGTATGTCGTATAGTCCTACAGCTGGGCATAC TGTGATTGCGATCCTCCAGGTTGTTCCTGCCTGAAATTCTCGTTTGCGTGTGTCAAAGTTATTTGTGGAGTAAATCAATT TGTTGTTAATTTTTCATTTCTTGTTGATTGGGAGATGGAACTATTTAGTCTTTGTGTTTCTGAATGTACTGTTGGTCATT CCTGTTATCTATTAGTTTATATGTTGCGAGTTGTGGACGGTGAAGTTCTTATGTCCTTATTAGAGCACTTGCTTTTTCGC TTGTAGGATTGTACGATACGATCTTGTGATTTTGACTTAGAGCAAACATGTGTATTGCATTCACCGGAGAAGAAATCAGA CCAAATTTCTTCTGATACTGAAGTTCATCTGGCATTGACCCCACTACAACCTGTTGCTTTTTTTGGATTTCGTAAACGGA TGAGTGTTACAGGTTTGATGTCTTGTTTCTCTTTTGTGTAGATAGATGTGTTATTGTCACTGGTTTAATCACTATGCATG TTTTTTTTTGCATAAATGAAGTTGTTGGAACTGTTGAAGGCGGGAGAGCACCCACAAAAATCAAGACGGACTTGAAGAAG CCTATTGTGAATCTTGCTTGTCATCCTCGCCTCCCTGTTATGGTATTATTTCAATATACTTCCTCTCATAATTCTATTTA TTGTCAGTTCATGTTAGTATTTCTGTATCAAGAAAGATCTACTATGGCTTTGCTGACTATTGATACCTCAACCTGTCCTT CTTGACCTAGTTGCTTTTATGTCCTAGTATGTAGCTTATGCTGACGGTTTGATTCGAGCATATAACATTCAAACCTATGC TGTTCACTACACATTACAACGTGAGATGATTCTTGATCTTTATATATTCTATTCTTGCTGATATGATTGTATTTTCATTT AAGTCATATCTTAAGTGTTATTCATATTTTGTTTCCTATTCAGTTGACAATACTATAAAGCTTAATGGCGCTGGTGCATT TGCATTTCATCCAACTCTAGAATGGATTTTTGTTGGTGATCGACGTGGTACCTTACTGGCGTGGGATGTATCAACTCCGA CGCCTAGTATGATTGGAATGTGAGTGACTGTAGTTCACCCATGATAGAGGTTTCCTCATTTTTGTAATGGAGAGACCCGG TATCATGTATTCATATTTATCTATTTTGAATTTTGTTATTTACTTCAAGCCAATTGTTGGAAATGTTAAGTGGACTCTTG TATTGTGATCTGATGCTTATATTATTGCAATTTCAGAATTCAAGTTGGCTCACAACCCATAACATCAGTTGCTTGGTTAC CCATTTCACGATTACTTGTAACCCTATCAAGGGATGGAAATCTGCAAGTTTGGAAAACACGGGTTGTATTTAATCCTAAT AGACCTCCAGTGCAGGCAAATTTTTTTGAGCCTTCTGGTTAGCTTTCTTCACTGTGTCTGTCTCTACTTTCAATTTCCTG TTGGTTTCTGCTGCTACATGCCCCCCCCTGAATGATTTAATAGCATAGAGAAAGATAGGGAAAAGAAACATACCTACCAA CAGTCATCTTACATCACTTTCTTACTGTTTGTTTTATTAAACTTGGTTGGCTAAAAGTCTAAACCATATTACATTCTTAT GCAGCAATTGAATCACTTGATATCCCTCGTATCCTTTCTCAACAAGGTGGAGAAGCAGTGTACCCCTTACCGCGAATTAA AGCTTTAGAATTTCATCCAAAATCTAATTTAGCAGCACTTGTGTTTGCAGTTACGTGCCACCTTTCATTATTTATATCTT CTTAGCCATTTATTATTGGATATATAAATTTCAATTTTATTTTAATAGAACATAGCAAGTGAAGATACTTCAAAAAATAA GACCACTCTTAATCGAGAAAGGAGAAAGCAACTTTTTGCAGTTTTACAAAGTGCACGGGGATCGTCAGGTGAATATTTTG TATTTAGCTGAAAAAAGGTTATGCTTTTTCCTTTTTGTATTTTCTATTTGAATATAAAAGATTCCAGGATAGGATATACT TCTATAAACAAGACAATTTTCAGTTTGAAAGATATTTTCTATTTGAGTAGACACAAATTTGGAGAGTTTCTGTTCGTAAT TTTGCTTTTGCTGCTATATTCCATTGATCAGTATGGTGATAAATTCTTCTAAGTTTTCAAGTTTACTTTTCAAGTGACAT CTTATTTACTTAACCCCACTGTCCTATGCTGCAAATATTTCTTTAGATTTCTTTGTCTCCTCTTTTTGTGGATATCATGT CCCATGCAATTTTATTTTGGGTAAAATTCCATGCCATGTCTTTCATTGGGAGTTTTGAACAAAAAAAGTATTCAATTACA TTTCTGTCTTTTATATTCTTCTCAGTTCTCACTATTGAGAAGTCGCGCATTTACTAGAGATATGGCCAAATGAGTGTTTA TAAAGGATAGAGCAACCATCACCTCTAAGCTAGCTTTATCAGAGTCTATCCTAGATCCGTTTTTTGGAGATCACTCATAT ATGAGTCACCTGCAGATTTTCATTCCTGCAAATTTTACGCTTCAGATGTCCATTGTCCAACACTAAGCGTGAGGGGATGT GTTGCTTGACTGGAGATATGGCCAACTAAGTATTTATAAATGATAGAGCAACTCTCCCCTCTAAGTTAGCTTTAGGGTAG AGTTAGGCATATCCCAAATTCTTATTCTTACCATACATAATTTGTTTTGTACATATTTTGATACTTATATTTTGTGGTTA CCATTGCATGTTTATGTCTTTCACCTTATTGCTTCTTCATTTTCCATAATATTGGCTGTTTCTATCTAGCTCTTTAATCC AAAAAAATGCTAATGTTACCGTCGCTATACAGCATCTGTTTTAAAAGAAAAATTGGCAGTCTTGGGTTCATCTGGAGTGT TAGCAGACCATCAGCTTCAAGCTCAATTACAAGAACATCATCTGAAAAGGTGA
CDS sequence (LotjaGi2g1v0399300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGACCACATTGCAGCACCTTGATCTCCGCCATGTAGGCCGTGGAGACAAACCTCTGCAGCCTCACGCTGCTTC CTTCCACCCTCATCAGGCACTCGTCGCTGTCGCCATCGGAACCTACATTGTCGAATTTGATGCATTGACAGGAAGTAAGA TTTCTTCTCTTGACATAGGTGCACCTGTTGTGCGTATGTCGTATAGTCCTACAGCTGGGCATACTGTGATTGCGATCCTC CAGGATTGTACGATACGATCTTGTGATTTTGACTTAGAGCAAACATGTGTATTGCATTCACCGGAGAAGAAATCAGACCA AATTTCTTCTGATACTGAAGTTCATCTGGCATTGACCCCACTACAACCTGTTGCTTTTTTTGGATTTCGTAAACGGATGA GTGTTACAGTTGTTGGAACTGTTGAAGGCGGGAGAGCACCCACAAAAATCAAGACGGACTTGAAGAAGCCTATTGTGAAT CTTGCTTGTCATCCTCGCCTCCCTGTTATGTATGTAGCTTATGCTGACGGTTTGATTCGAGCATATAACATTCAAACCTA TGCTGTTCACTACACATTACAACTTGACAATACTATAAAGCTTAATGGCGCTGGTGCATTTGCATTTCATCCAACTCTAG AATGGATTTTTGTTGGTGATCGACGTGGTACCTTACTGGCGTGGGATGTATCAACTCCGACGCCTAGTATGATTGGAATA ATTCAAGTTGGCTCACAACCCATAACATCAGTTGCTTGGTTACCCATTTCACGATTACTTGTAACCCTATCAAGGGATGG AAATCTGCAAGTTTGGAAAACACGGGTTGTATTTAATCCTAATAGACCTCCAGTGCAGGCAAATTTTTTTGAGCCTTCTG CAATTGAATCACTTGATATCCCTCGTATCCTTTCTCAACAAGGTGGAGAAGCAGTGTACCCCTTACCGCGAATTAAAGCT TTAGAATTTCATCCAAAATCTAATTTAGCAGCACTTGTGTTTGCAAACATAGCAAGTGAAGATACTTCAAAAAATAAGAC CACTCTTAATCGAGAAAGGAGAAAGCAACTTTTTGCAGTTTTACAAAGTGCACGGGGATCGTCAGCATCTGTTTTAAAAG AAAAATTGGCAGTCTTGGGTTCATCTGGAGTGTTAGCAGACCATCAGCTTCAAGCTCAATTACAAGAACATCATCTGAAA AGGTGA
Protein sequence (LotjaGi2g1v0399300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWTTLQHLDLRHVGRGDKPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISSLDIGAPVVRMSYSPTAGHTVIAIL QDCTIRSCDFDLEQTCVLHSPEKKSDQISSDTEVHLALTPLQPVAFFGFRKRMSVTVVGTVEGGRAPTKIKTDLKKPIVN LACHPRLPVMYVAYADGLIRAYNIQTYAVHYTLQLDNTIKLNGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTPTPSMIGI IQVGSQPITSVAWLPISRLLVTLSRDGNLQVWKTRVVFNPNRPPVQANFFEPSAIESLDIPRILSQQGGEAVYPLPRIKA LEFHPKSNLAALVFANIASEDTSKNKTTLNRERRKQLFAVLQSARGSSASVLKEKLAVLGSSGVLADHQLQAQLQEHHLK R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 400 | 400 | 7.5E-246 | – | |
| PANTHER | 1 | 400 | 400 | 7.5E-246 | – | |
| Gene3D | 2 | 279 | 278 | 3.0E-20 | ||
| SUPERFAMILY | 22 | 275 | 254 | 4.7E-27 | ||
| SMART | 50 | 89 | 40 | 49.0 | ||
| SMART | 134 | 183 | 50 | 42.0 | ||
| ProSiteProfiles | 151 | 282 | 132 | 10.707 | ||
| SMART | 192 | 229 | 38 | 30.0 | ||
| SMART | 234 | 273 | 40 | 1.6E-4 | ||
| ProSiteProfiles | 241 | 275 | 35 | 9.874 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0399300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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