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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0400800 |
| Transcript ID | LotjaGi2g1v0400800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|Q43457|Q43457_SOYBN Heat shock transcription factor 34; Found in the gene: LotjaGi2g1v0400800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89825571..89828125) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTTTCACATGAAACAACATTATTATTATTTTTCCATGAGGAAAGAAAAAGCCAACGATGACCCATACAAAAAGCG TGTTTGTGTGCAACATTTTCCAAATTCTGGCCTTAAAAAATCAAAGTGAAGAAGTGGCATGAATGGGTACGTGTGGATGC GGTTATCGTTCGGTCCAAAGTAACTTTAGAATTCTTTAGTGCTTCTCAAAATTTCTAGAACCCACACGTCACTTTGGACT AAGTTCCCTTCCGCAGTTATATAAAGAAGAATCCAGAACCAGAATTTTGTGTTAACTCTCAAGTCACAACACTTGTATGG AGAATTATGGTATTTGTCAGTGTCATCACCCAAATTGATTTCCAAAATCGCGTTACTACTACTCATGGATTCTGATCGTC CTAGAAAGCACTTAGTTCACTCTCGCTTCTTCCTCTCTGGCTTCTATTGCTGGGATTGGGAATTCTTAACCGCTCTTCTC CTCTTTAGTTGTTCTTCCTAAATCGCTCAATCCTTTTCAATTTCTTTTTTCATCTTACATCAAATTAGGTAGTTAGAACA CACAAAAAAATCAAGAAAAACAGATTTGTCATTTGTGAGGTAGGTGAAGGGTAATTTGGGAAGAAAAAATGTCACAGCGA TCGGTGCCGGCGCCGTTCTTGACGAAAACGTATGAGATGGTGGACGATCCGGCGACGGAGGATGTGATTTCATGGAGCGA GAGCGGCAACACCTTCGTCGTGTGGAAGCATGCGGATTTTGCTAAGGATTTGCTTCCCAGTTACTTCAAGCATAACAATT TCTCCAGCTTTGTGCGTCAGCTCAATACCTATGTATGTTCATTCTTGCCTTTGATTTGTTAATCGAGATTGAGTTCTACG TTTTCCGATTTGCTAATTGAATTGGGCGTTTTTTTGTTTGTTTGAATATTTAGGGTTTCAGGAAGATCGTACCAGACAAA TGGGAATTCGCGAATGAGAATTTCAAGCGAGGGAAGAGAGAGCTACTCTCCGAGATCAAACGGCGCAAGACGGTGGTGGC GCAACCGTCAGCGCAGGCTCCGGAGGTTGGTAAATCCGGAAACTCGACTTCGAATTCCGGCGGTGATGAAGTGGGGTCCA GCTCGACGTCGACGTCTTCGCCGGGTTCAAAGAACCCGGGATCGGTGGAGACAACGACCGCTCCTCCTAATACTCTTCCT CCGGCAACCCTTCAGTGCGCGAATTTATCGAGTGAGAACGAGAAATTGAAGAAGGAGAATGAAACTTTGGGGTGGGAGCT GGCACGTGCGAAGAAGCAGTGTGAAGAGTTGGTGGGTTTTCTGAGGGAGCGTTTGAAGGTGGGACCCGATCAGATCGAGC GTATAATGCGGAAAGGGAGTTATGGATCTGATGAAAATAACGCGGTAGGTGAGGGAAAATGTGAAGGTGAAGGAGAGTGT TTGAAACTGTTTGGGGTTTGGTTGAAAGAAAAGAGTTTTTGTGAAAAAAGAAACAATAAGAGAGAGCGTGAAGACCAAAT GGGCTTTGGTGGGCCTCCAATACCTGCTAAGGTTTCAAAGACTACTACTGTTGTTGATTTTGGTGCTGTGAATGTGAAAG CAGTGATGAATAGTAGTAGCAAGGTTTGCAGCTGAACAAAACAAAACACCTTGGATCGCCACACATACTCAATCCATAAT CAGAAAATAGTTTTTTCTGGTTTATTTTGTTTAGGAAAAAAAGAAGCAAATAAAGAAATAAGAGGAGAAGCCCAAAGCTG CTCCAAACATGTTGAGTTGTATATTTGTGCTGTAACATGATATAGGTTTATGATAGTGCAAAGATTAATCATGGTTGATA ATAGGGTTTATTACTATAGTTTAATTAAAAAATGTCTTTTTCCCTTTTTAATATGCTTGTTATTTCTTACAAAATTAAAT AATTGGTGGAGAGATACAAGATCCCTAAGGGGTTCTGAATTTATACTTTACCTTTGTGTTTGGTTTGCTTTGAGAGGAAA CTTCAGAAAAGAAAATTGTGTGTGTAAAAATAGTGATATAATTTTTCCTTCATTTGGATGATCAATGATTTATACATGTG GAAATGTGTAGATGAGCAAAAATTGTGGGCACCATATGGTTGAGCTTTCATGCCTCCAAATCTCCAATGATGTGAGCAAG GTGTCAAAATTGTGTGGTCCACTTCAACAAATATCTATTTTTTAGACAAAACGAATATCCGTTTTTTCAGTCCATAAACA AATATACTTTTTAGCCCCCTCTTGATTTTGGCACATGAAACAAAGTAGGGGTTGTACCCTTTCAATGAATCTGTATTGAC CCATGTTAGTAAAACTTACACTTTATCAAGTTTGTTCGGGTCTAACTTTCAAAAAAAAAAAAAAGTTTGTTCGGGTCTAT GTATAAATTTGGGTTTAAAAAATTGGCCCAACTAATATCTAAGGTTGGGAACAAGTCAAGCACGACTTGTCCAACTAGTC ACCGACTAATCCTAATATCAATTGATATTTTTTGCTTTATGTAATATTTTTTTTGGTACATTGCCTTAAGAAAAC
CDS sequence (LotjaGi2g1v0400800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAGCGATCGGTGCCGGCGCCGTTCTTGACGAAAACGTATGAGATGGTGGACGATCCGGCGACGGAGGATGTGAT TTCATGGAGCGAGAGCGGCAACACCTTCGTCGTGTGGAAGCATGCGGATTTTGCTAAGGATTTGCTTCCCAGTTACTTCA AGCATAACAATTTCTCCAGCTTTGTGCGTCAGCTCAATACCTATGGTTTCAGGAAGATCGTACCAGACAAATGGGAATTC GCGAATGAGAATTTCAAGCGAGGGAAGAGAGAGCTACTCTCCGAGATCAAACGGCGCAAGACGGTGGTGGCGCAACCGTC AGCGCAGGCTCCGGAGGTTGGTAAATCCGGAAACTCGACTTCGAATTCCGGCGGTGATGAAGTGGGGTCCAGCTCGACGT CGACGTCTTCGCCGGGTTCAAAGAACCCGGGATCGGTGGAGACAACGACCGCTCCTCCTAATACTCTTCCTCCGGCAACC CTTCAGTGCGCGAATTTATCGAGTGAGAACGAGAAATTGAAGAAGGAGAATGAAACTTTGGGGTGGGAGCTGGCACGTGC GAAGAAGCAGTGTGAAGAGTTGGTGGGTTTTCTGAGGGAGCGTTTGAAGGTGGGACCCGATCAGATCGAGCGTATAATGC GGAAAGGGAGTTATGGATCTGATGAAAATAACGCGGTAGGTGAGGGAAAATGTGAAGGTGAAGGAGAGTGTTTGAAACTG TTTGGGGTTTGGTTGAAAGAAAAGAGTTTTTGTGAAAAAAGAAACAATAAGAGAGAGCGTGAAGACCAAATGGGCTTTGG TGGGCCTCCAATACCTGCTAAGGTTTCAAAGACTACTACTGTTGTTGATTTTGGTGCTGTGAATGTGAAAGCAGTGATGA ATAGTAGTAGCAAGGTTTGCAGCTGA
Protein sequence (LotjaGi2g1v0400800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQRSVPAPFLTKTYEMVDDPATEDVISWSESGNTFVVWKHADFAKDLLPSYFKHNNFSSFVRQLNTYGFRKIVPDKWEF ANENFKRGKRELLSEIKRRKTVVAQPSAQAPEVGKSGNSTSNSGGDEVGSSSTSTSSPGSKNPGSVETTTAPPNTLPPAT LQCANLSSENEKLKKENETLGWELARAKKQCEELVGFLRERLKVGPDQIERIMRKGSYGSDENNAVGEGKCEGEGECLKL FGVWLKEKSFCEKRNNKREREDQMGFGGPPIPAKVSKTTTVVDFGAVNVKAVMNSSSKVCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 101 | 100 | 5.2E-40 | ||
| PANTHER | 3 | 262 | 260 | 6.9E-103 | – | |
| PANTHER | 3 | 262 | 260 | 6.9E-103 | ||
| SMART | 6 | 99 | 94 | 1.4E-61 | ||
| SUPERFAMILY | 7 | 99 | 93 | 1.5E-34 | ||
| Pfam | 10 | 99 | 90 | 4.2E-31 | ||
| PRINTS | 10 | 33 | 24 | 4.7E-21 | ||
| PRINTS | 48 | 60 | 13 | 4.7E-21 | ||
| ProSitePatterns | 49 | 73 | 25 | - | ||
| PRINTS | 61 | 73 | 13 | 4.7E-21 | ||
| MobiDBLite | 102 | 160 | 59 | - | – | |
| MobiDBLite | 111 | 160 | 50 | - | – | |
| Coils | 163 | 190 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0400800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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