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LotjaGi2g1v0402800.1

Overview

Field Value
Gene ID LotjaGi2g1v0402800
Transcript ID LotjaGi2g1v0402800.1
Lotus japonicus genome version Gifu v1.2
Description Myb-like transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|V7C750|V7C750_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0402800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90028719..90029490) extracted from Lotus japonicus Gifu genome v1.2.

CCCCCAACACACAATTGCAATTGACTCTTTTTTTTTTCATCTACCTTAAACCTCCAAAATTGATCTAAGATGGCTGAGTG GAGCAGAGAGCAGGAGAAAGCATTTGAAAATGCCATTGCAAGTTATGCTGAAGATGATCCATATCGATGGGAGAAGATTG CGGCTGCTGTACCAGGGAAAGCAATCAAAGAAGTTAAACATCATTATCTGATCTTGCTTGATGATGTTTTGAATATTGAA TCTGGTCTTGTACCTCCACCAGATTATGATTCATTTTCACAGGGCTCAAAAAGTCATGCTTCAAGATCTGATAATCAGGA ACGACGAAAGGGTACTCCTTGGACTGAGGATGAACACAAGCAGTTTCTTCTTGGGTTGGAAAAGTTTGGAAAAGGTGACT GGAGAAGCATATCAAGGCACTTCGTGGTGACAAGAACAGCCACACAAGTTGCAAGCCATGCACAAAAATACTTCCTTCGT TTGAATTCGACTTCTAATAAAAAGCGATCCAGCATACATGATATCACCATTGACAACAATGAAGGCACTTCAGCAGCACC TCAAGGACCAATTACTGGTCAGAAAAATCCTTGACATAGGACATCATGAATGAATTAATGTTGGTTATGTAGGCATTTAA ATTATTAGTTTAAGTTATAACTAGCCTGTTAGGTAGTGGAAGGTTCTGTATTGTTAAGTAGTTTTGATTGTATTTTGTTT TGTTAGAAAGAAAGAACAAATGTCTTCTTTCCATTCCGTATGAGAAATTGGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0402800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGTGGAGCAGAGAGCAGGAGAAAGCATTTGAAAATGCCATTGCAAGTTATGCTGAAGATGATCCATATCGATG GGAGAAGATTGCGGCTGCTGTACCAGGGAAAGCAATCAAAGAAGTTAAACATCATTATCTGATCTTGCTTGATGATGTTT TGAATATTGAATCTGGTCTTGTACCTCCACCAGATTATGATTCATTTTCACAGGGCTCAAAAAGTCATGCTTCAAGATCT GATAATCAGGAACGACGAAAGGGTACTCCTTGGACTGAGGATGAACACAAGCAGTTTCTTCTTGGGTTGGAAAAGTTTGG AAAAGGTGACTGGAGAAGCATATCAAGGCACTTCGTGGTGACAAGAACAGCCACACAAGTTGCAAGCCATGCACAAAAAT ACTTCCTTCGTTTGAATTCGACTTCTAATAAAAAGCGATCCAGCATACATGATATCACCATTGACAACAATGAAGGCACT TCAGCAGCACCTCAAGGACCAATTACTGGTCAGAAAAATCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0402800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEWSREQEKAFENAIASYAEDDPYRWEKIAAAVPGKAIKEVKHHYLILLDDVLNIESGLVPPPDYDSFSQGSKSHASRS DNQERRKGTPWTEDEHKQFLLGLEKFGKGDWRSISRHFVVTRTATQVASHAQKYFLRLNSTSNKKRSSIHDITIDNNEGT SAAPQGPITGQKNP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51294
1 54 54 9.106
IPR017930
SMART
SM00717
1 52 52 7.8E-4
IPR001005
PANTHER
PTHR44191
1 173 173 7.4E-82 –
PANTHER
PTHR44191:SF21
1 173 173 7.4E-82 –
Gene3D
G3DSA:1.10.10.60
2 49 48 2.4E-18 –
CDD
cd00167
3 50 48 8.52099E-7
IPR001005
SUPERFAMILY
SSF46689
3 58 56 5.6E-11
IPR009057
Pfam
PF00249
3 47 45 2.6E-6
IPR001005
MobiDBLite
mobidb-lite
65 94 30 - –
MobiDBLite
mobidb-lite
78 94 17 - –
ProSiteProfiles
PS51294
83 139 57 17.097
IPR017930
SUPERFAMILY
SSF46689
85 140 56 2.66E-17
IPR009057
SMART
SM00717
87 137 51 4.0E-12
IPR001005
TIGRFAM
TIGR01557
87 137 51 1.8E-17
IPR006447
Gene3D
G3DSA:1.10.10.60
89 141 53 3.8E-18 –
Pfam
PF00249
90 134 45 1.6E-12
IPR001005
CDD
cd00167
90 135 46 1.55174E-10
IPR001005
MobiDBLite
mobidb-lite
143 174 32 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0402800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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