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LotjaGi2g1v0403000.2

Overview

Field Value
Gene ID LotjaGi2g1v0403000
Transcript ID LotjaGi2g1v0403000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein; TAIR: AT5G67140.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FH99|FB302_ARATH F-box protein At5g67140; TrEMBL-Plants: tr|I3SRZ0|I3SRZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0403000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90040122..90041932) extracted from Lotus japonicus Gifu genome v1.2.

CTTATTGTTATGGAAGAGATTGATCGGTTACCCATTGACTTGCTGGCTCATATTTTTGGCCTCTTCACTTCCTTCACTGA TTTGGCTCAGTCCAGCAGTGTTTGCAAGAAATGGAAACAAGGGGTCAAGGAATCTCTGGCTAGGAAACAGAATCTTAGCT TTGCTGGTTGGAAGATGGATGATGACTCCACTGCTCGCCTTGTTTCACATGCCTACAACCTCAAAAAACTTGATATGTAT GTATATTTATATATATGTTTCTCTAAATCTTTTGAGATGAATTAATTAGAAGTTGAGTTTAGAAATTGAGATGAATTGGT TACTAATTTGTGTTTCTTACTTGCTTTCAGACCAAGGAGCAGGTGGGGTTGCCAGATAACTGATGCTGGACTAATCAGAA TTTCATTTGCAAAGTGTGTAATCAATCTCACATCTATATCACTATGGGGATTGACTGGTATCACAGATGAAGGTGTTGTC CAACTGGTATGTCATTCTTATGTTTTTGAAACTTACATGCATGCCAGGGGTTTTGGAGATAGTGCTTTCCTCTTCCTGTT TTTTGTTTTAAAAGTTTTGATTTGCTGCACAACTATCAACATGATTTTGAAACTTATAATGGACCTAACTAGCACTCTAG CAGCTATTCCATCTTAAATTTACATTATGTAAAGCAGGACAGTATTTGTGTTCATTGTTCAAAACTAGATTCTGCAGATA GTATTCTGGTATTTGTGAATGGTTTGTTGGAAAAAAAAGTTAATTGGATCTATACTGGGATTTAGAACTCAATGTAAATA TTAATATTAAATGCATACAATGAGAACAAATGCACAATCATAGCTTTGGAAATCTATTTGCAATTGGAGGTAGTGTAGAT TTCAGGATTTTCCTCTTCTTCACTCGCTATAGCCGAGCTCTTGATGGAAATTCCAAATGCACAACCAGAGTTATAATCTT AGTTTCCACCCATCATGGAGCCTAAGTTACTTGGCCCTACAACTCAATACAACATACTTACCAATTTAGCTTAAACAGTT AAACCCAATAAATATTAATGTATATTCATGGTGATACCTAAACTTATAATGGATCAAATGATTATATGTATACCAACAAT AAAATTTCAAACCTAGAAAATTCTAACATTGAAATTGAATAGTTTTGATTTTAATTCCTTTTACTTCTCTGATGGCAATT ATTGTAACAGATATCCAGAACTAGATCTTTACAGCATCTGAATGTTGGTGGTACATTTATCACTGATGAATCTCTTTTTG CCATTGCAAGAAGTTGTCCAAAGTTGGAGGTAAGTTATGTAAAATTGAATGTGAGGTTTTATGTGAAAATTTTCTTCTTC TGACATTCCATTGCATAGATCCATATCATATATAATTGCTTATGTTCTTTCTTGTTCAGACCATTGTTCTGTGGAGCTGC CGTCATGTAACTGAGAATGGTCTTATTGCACTAGTTGATAACTGCCTCAAGCTCAAGTCAATGAATTTGTGGGGAACAAG AGTTCCTGTGGACTGCCTTAGTAATTTACTCCTTGCAAGTCAAACTCTTCAAATCAAAGTTTAACACTGGACAAGATGTT GATTCAAACAGTGATTTTTTCACTGTCTTTTATGTACATATTGTTTACTTCTTGTATTCTTCAATTGATTTTGCACCAAA AATCTGAATATGACAAACTCTATTCCTGTATATGAAGCATAACGTGTATATAACTATTGAACTCTATCAAGTTACCATTA TTGTAAGGAATTATTTTATTGGTTTACATTATTTGAATGTCTCTAAGCCTC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0403000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGATTGATCGGTTACCCATTGACTTGCTGGCTCATATTTTTGGCCTCTTCACTTCCTTCACTGATTTGGCTCA GTCCAGCAGTGTTTGCAAGAAATGGAAACAAGGGGTCAAGGAATCTCTGGCTAGGAAACAGAATCTTAGCTTTGCTGGTT GGAAGATGGATGATGACTCCACTGCTCGCCTTGTTTCACATGCCTACAACCTCAAAAAACTTGATATACCAAGGAGCAGG TGGGGTTGCCAGATAACTGATGCTGGACTAATCAGAATTTCATTTGCAAAGTGTGTAATCAATCTCACATCTATATCACT ATGGGGATTGACTGGTATCACAGATGAAGGTGTTGTCCAACTGATATCCAGAACTAGATCTTTACAGCATCTGAATGTTG GTGGTACATTTATCACTGATGAATCTCTTTTTGCCATTGCAAGAAGTTGTCCAAAGTTGGAGACCATTGTTCTGTGGAGC TGCCGTCATGTAACTGAGAATGGTCTTATTGCACTAGTTGATAACTGCCTCAAGCTCAAGTCAATGAATTTGTGGGGAAC AAGAGTTCCTGTGGACTGCCTTAGTAATTTACTCCTTGCAAGTCAAACTCTTCAAATCAAAGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0403000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEIDRLPIDLLAHIFGLFTSFTDLAQSSSVCKKWKQGVKESLARKQNLSFAGWKMDDDSTARLVSHAYNLKKLDIPRSR WGCQITDAGLIRISFAKCVINLTSISLWGLTGITDEGVVQLISRTRSLQHLNVGGTFITDESLFAIARSCPKLETIVLWS CRHVTENGLIALVDNCLKLKSMNLWGTRVPVDCLSNLLLASQTLQIKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
2 206 205 2.4E-33
IPR032675
PANTHER
PTHR16134
3 207 205 1.8E-101 –
PANTHER
PTHR16134:SF4
3 207 205 1.8E-101 –
SUPERFAMILY
SSF81383
4 55 52 3.01E-7
IPR036047
Pfam
PF12937
4 37 34 3.2E-6
IPR001810
SUPERFAMILY
SSF52047
48 200 153 8.04E-20 –
SMART
SM00367
99 124 26 3.5
IPR006553
SMART
SM00367
125 149 25 2.0
IPR006553
Pfam
PF13516
126 147 22 1.4
IPR001611
SMART
SM00367
150 175 26 2.0E-4
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0403000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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