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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0404600 |
| Transcript ID | LotjaGi2g1v0404600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rer1 protein, putative; TAIR: AT4G39220.1 Rer1 family protein; Swiss-Prot: sp|O48670|RER1A_ARATH Protein RER1A; TrEMBL-Plants: tr|I3SGQ8|I3SGQ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0404600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90160011..90165372) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGATCTTAATAAATTGGTAGAACTCTTTCCGCAAATTATTCTCGTTATGCACCACCTTTATATTGACTAAGTGCTTA ACGACCTCAGCCACTTGTTGGTCAACAAATTCTTAATTATATCCTAATCATATTTGTTTCTTTTGGAAAGGAAGTAAAGA TCAGTTAAAATAGTTAATCCGGGTAAAGATCCGAACCGGGCCAAATTATAGGAAGATCATCTCCCTCCTCCGTCTGCATC TCATTCAATTCAGACCAATTCGATGGAGGTTGGCGGCGAAGTTTCACCGGAAACCGCGATATCTCGATGGAAGTTGGGGC TATCGCAGCAGTATCAGCACATGCTCGACAAGACCACCCCGCACGTACTACGGCGTTGGGTTGGTTGCTTGGTGGTGGCC TCCATCTACGTCCTCCGTGTCTACCTGGTGGAGGGCTTCTACATCGTCTCCTACGCTCTCGGCATCTACATCCTCAACCT CCTCATCGGTTTCCTCTCCCCTCAGGTCGATCCCGAGGTTTACGACGACGGCCCCACCCTCCCTACCTCCGGATCCGATG AGTTCCGCCCTTTCGTTCGCCGTCTTCCCGAGTTCAAATTCTGGTAGTACACCTTTCCTTTCACCATCGAATTTTCTCTT CTTCATTCAATTTTCATCATAGGAACGGATTCTGATTGCATTGGTTGTACTTTATCTGTATGTATCTTGCAAAGAAGAAG AAGAATCTAGATTCTTCTATTTAAGCCAGGGTTGTTAATGACGGATAGCCTAGTGTAGCGGCAAGCCAAAAAAACGCTAT TTCGAGCGCTATTGCGGCGGTGAATAGTGGAGTAGCAGTGAACCTCCAGGGCACTACACTATAGGCTCTTGTGCCGCTAT AGCACGATATTAACAAGCCTGATTTAAGCAAATTGTGGATGTTTTCAGAGTGTTAACATTCCACATCATGTTGACCTCTA TGTTTACATCAATGTTGCTTGCTCTGCTGTTTCGAAATTAGGAAGGAGGGTGTAATGTTAATATAAACAACCTTTGTACT TCTTTATGTGAAGCCAGTGTCATATTAGGCATCTGAAAGGTTATAAAGTTGCTAGGTGTTGTTGTTCTCTTTGGTTTTGG CGCTTTAATCGGTAAAAATGCTCTTGAATCAGTTTCTGTTAAAAGTGATTTGGGTTCTGTGCCAATCGTGAAACCAAACA TGCACTAAGTTGTACATGTAAAGGTGTGTTTTGATCCGCAATGTTTCCCTCATAGCTTCTGGCCTTAGGTGATTAGTATT ATATGCGAACCATTGTTCCAAATACACTCCAAGTGTGTGTTTGATTTGATTATACTCTTTCTCTCAAATGAGTTCAATTA CTCCTTTCATGTTTCATGCCTTGGAAAGTGTCAAATTTGTGTTAATGGAATGAAAATGGAAAAACAAGCATGTCCTATAG TTTCTTCTTCAGTTAGGAAAGCAACTTTTGACATGCAGCACCGTTACTTTTACTGAAGGAGCTTAATTTTTCTTTGTGGG CAGGTACTCGATCACAAAGGCCTTTTGCATTGCATTTGTGATGACTTTCTTTAGTGCGTTTGATGTTCCTGTCTTCTGGC CAATACTTCTCTTCTATTGGGTGGTCCTATTCACGCTCACTATGAGGAGACAGATATCCCACATGATCAAATACAAATAT GTACCGTTCTCATTTGGGAAGCAGGTGAGTTTGAATCTTTTTAATTTCATTTGGAATTTATCTCTGTAAATGTTATATGG TTATTAATTCATTGGTGGTGTTATTATCTGGATTATTACATCTTTGTTGCTAATTGTAAGCTTTGGTTGTGACTTTTTGT CTATTTTACATTTTTACTTTTAGCGCTATACTGGAAAGAGAGCATCAGCTGAAAGCAAGAGCCTTCCGGAGGACTGATAA TTCAGTTTCATTGAACTTTATTTGCTGCATTTAAGTCACAACCTCACATATGGCGTGATATCATCTGCAGTATGTTGTAA CACCTTGAGAAATATGAGGATGTGAGATTGCTTTGAGGTCTAGCATGGAAGTGGACATCTAGATGTTCAATTCCCAATTG AGCAACTGTTTGGACATCTTCAATGTCTCTGCACCCTAGTAGAAGACTTAGTTATGGGGAGATGCTGGGTTTTTTCCTTT GCATCCCCCTTCTAGTGAAGTCCTTTTTCTTTAGTTTCTGTTTCTAATAGGTGGGCAAGTGCCAAACTCTGATTGCTGAA TTCATGGTCGAATAATGAGAAGTATACAAAAATCAATGTAGTTGGAATCCCCTTCATTGTTTGCTATGGGGTTATACTGA TCTGTTCTTCCCCATTGTATCTTCAGCTGCAATTAAATGCAAGTCTTCTGGAAGTTATCTGAGTCCTACAACTTTCCCTG ACTTGGACTGGGGCCATCTCCTCACCCAAAATTTTGTTAACAATTTTCTTTTGTACATGTTTTCTTTTATAATTAATTTA CTGCAAGTAGGATTTAATAATAAGAGGACTATCATGCTATATTTTTCTTTTACAATTTAAATCTATTTAGAATATGTGAA AAGAAAACTTGTTGATGCAGCTAAACCAAAGTTGTTTTGGTAAGCATCATATGCATCACAAATGGAACTTGTATTACAGT AGTAGGCACAAGCCAGCACCTTCTGTGCCAAAACAAATTAAATAGTGAGGATCCATGCTTCCAAGCTCTTTTCCAGGCTT GATTCTTGAAGCTAGTGCAAACACATCAATATCTTAGACTTAAAAATGATCAATGCTATAAAATGCATTGGTAAGCAAGA ACTAAGAAATGAAAGACCTTGCAGGGGTACACCAGTTACTGAGCTGGTCTGTAATAACCATATACACTGTAGTAGGTTTG TGCAAGAGTAAGTAGCAACAAGACAACAGCAGCAATGAAAGAGATAATCGCCCAGGGATTACTAAAGTAATTGTGTCTCA AGCTTGCATACCACTTGTTCCATCTATGGTTATAATACCTATTCACAGCATCTGACATTGTGGAAAGGTAACTGTTGTTA ATGTCAAACACAACCTCTTGACATAAGCGATTAAAAAGGTCTGCAACTTCTTCATCACTGCCAAGCCAATGCTCGATTAT CCCATGGTAATGAAGGTACCCCACATCTTCTGGAGAGTTAATCAAGTTGTCCATGAAGATAACATAGGATGTGATGTCAT TGCTGCAATCAAGATGACACTGCTCAAAGGCAATGAGGTTGAGGAACAGAGACTTGGTACCATCATGGATCAAGAGTCGT GGTATCCGCAGGATGCCGTTCTCAAATTTTATATCCCAGAAGCGGTCCGTCTTCCTTTTCTTGAACTTGATTCCAGCCTC TTTAAGCTCTGTGACACAGTGTATCAGTTGCTGGCGCCGTTTGTCTGCAACTCTATGGTTATTCGACCAGCGTTTGATCC ATATTCTTGGTGTTGATTGAGGTCCTGTGCGCAGTAGACTTCTCCTGAACACATCCAAGCAATGAAGACCGCCTAAATCA GATAAAGGATCAAAGGTATCACTGCTTTTAAATGATGATTCCAATTTGTTTATATCACTCTTTGTTAATGGCTCATCTGT TGGCATTAAGGGGTCGAAGAACCTGAGAGCTAGACCTGCAACAAGTCCTTTTAGGTCTGGGTTACCAAGTTGAAGTCCCA AAAGCCGATCTAGTACGAAAAGTGGAAGCTGGTTTTCTAGCATGATCATGTCTCTATGAATGGAGTGCATTGATCCACGC ATTGCAAAAATAGGATCGTTCCTTGAATACCCGAGTTCCTTGAACCCCTCTGTAGCTCCTCTGAATAGCTCCAGCACAAA ACAACCATCAAGGACCAACATTTCCACAAACTCATTGCTGCTTAAACTGATTGGTCCCTCATAGAAGGAGCGAGCTCTTT CTTCTATCTCTTTCATGGAGTTGAGGTAGAGCCTAATGTCGTGTTTGGTTCGCTTGAGGACATGGTCAAGGGAGCGCCAT TTATGGCGTTCCATTTGGCGAAGGCGCTTTTTGCCATGGTGGTAAGGACCTAATGACACAATCTGAGGTGCATATGCTTT GTCATCGCCAGTACTATCTCTAAGGTAGTGGGGGATTTTGTAGATTGATAGCTTGGCCCATGAACTTGCTACATCATCTT GACATGCCTGGTCTAGTTTTTCCTTGATGGAGATCACCCAATCAGATACTGGGGAGCTAGCTTCTTCCTCTTGCAGATGT TCACCATTTTCATTGACGATGACATGCAATGATTCTGAAGGTTCCTGCTGAAGCTTTTGCTGCTGCTGAGGAGGAAACTC GATTGACCGGTTTTCTGAATTAGGAGATGGTGGACGCCCGGATTCTAAGGTTTGTCTGAGTTTGAGGGTGATAAGGTACC AACTCAAGAGTTCTTTGTTGAATACCGCTACCATTTTGTTCTTCTTTTCTGGAGACTGCTATTCTGTTTGTGTTTCTTGT CAATGGTTTGAACTTTGAAGGGTGCTGTTAAATCATAAACAAATAAATTGAGTAGTTTGTGATTATGGAATCAAAGGACC TACCTATTTCCTAGAAGGATATGACTTGAACAAATTAAACAGCTCATATGGGACCCCTTTGAACCAAATTGCAGCAGGTT CGCGATAACTTTCAACTTTTAAGCGTGCTATTATTATGTAAAACTTATTCTTATTCCAGCTAATCTGTAGAATGATTAAT TATCTTGGAAAAGAGACTTCAAATATAGATTAGATTCAGAGGGTGGATAAAAGGGGCTTGAACATGTGAAATTTAATAAT TCTGCAGATTGCACATGTTTAAAATTATTGTGGCTTGTGGGGTTTACCTCCTGGTCCTGGTCCTATTCGTTTTTATGTTA ATAAACAGACTAAATTGTTAGTTGCAAGAAGGATGTAAGGTGGGGGACAGGGACATGCACAATAGAGGGGAAAACGTGAA AGAAATCAAAATTTGTTAGTCGTGACTTCATGCTTTGGTCGTGTCTTAATTATTCATTTAAATGACTTCAAAGCAATATA TTGTTTCAGATTGTCAGGATACATATCTTAGATTGCCATCCCTTGTATCTTTGAACTTCAAAACAGAAGTAAACTCTTGA CAGCTAAGTAACACATGCCTTCAACTGCGGCTTGCAAGAAGGACCCTAATTGATACTTTGATAGTAGTAGCTTCATGACC GCCAAGAGAATCGGACACCACATCACCTATGTAAACTTCAAAATTCAAATACATTGAACAGAGTTATCCGTGCGGACGAG CATATAAACTCAGTTCCAAAACTTCAAACATGTTTCTTTGATCTGGTCAAAGTGTTATTAAGTACTATCTGTTGTAATTA GC
CDS sequence (LotjaGi2g1v0404600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGGCGGCGAAGTTTCACCGGAAACCGCGATATCTCGATGGAAGTTGGGGCTATCGCAGCAGTATCAGCACAT GCTCGACAAGACCACCCCGCACGTACTACGGCGTTGGGTTGGTTGCTTGGTGGTGGCCTCCATCTACGTCCTCCGTGTCT ACCTGGTGGAGGGCTTCTACATCGTCTCCTACGCTCTCGGCATCTACATCCTCAACCTCCTCATCGGTTTCCTCTCCCCT CAGGTCGATCCCGAGGTTTACGACGACGGCCCCACCCTCCCTACCTCCGGATCCGATGAGTTCCGCCCTTTCGTTCGCCG TCTTCCCGAGTTCAAATTCTGGTACTCGATCACAAAGGCCTTTTGCATTGCATTTGTGATGACTTTCTTTAGTGCGTTTG ATGTTCCTGTCTTCTGGCCAATACTTCTCTTCTATTGGGTGGTCCTATTCACGCTCACTATGAGGAGACAGATATCCCAC ATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAGCAGCGCTATACTGGAAAGAGAGCATCAGCTGAAAGCAAGAG CCTTCCGGAGGACTGA
Protein sequence (LotjaGi2g1v0404600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVGGEVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGIYILNLLIGFLSP QVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISH MIKYKYVPFSFGKQRYTGKRASAESKSLPED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PIRSF | 2 | 187 | 186 | 1.9E-86 | ||
| PANTHER | 6 | 184 | 179 | 4.2E-140 | ||
| Pfam | 19 | 177 | 159 | 5.4E-75 | ||
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 35 | 55 | 21 | - | – | |
| Phobius | 56 | 60 | 5 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 61 | 78 | 18 | - | – | |
| Phobius | 79 | 112 | 34 | - | – | |
| Phobius | 113 | 131 | 19 | - | – | |
| Phobius | 132 | 136 | 5 | - | – | |
| TMHMM | 135 | 154 | 20 | - | – | |
| Phobius | 137 | 154 | 18 | - | – | |
| Phobius | 155 | 191 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0404600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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