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LotjaGi2g1v0405000.2

Overview

Field Value
Gene ID LotjaGi2g1v0405000
Transcript ID LotjaGi2g1v0405000.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ADP-ribosylation factor family protein; TAIR: AT3G62290.1 ADP-ribosylation factor A1E; Swiss-Prot: sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2; TrEMBL-Plants: tr|I3T7N3|I3T7N3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0405000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90186146..90188322) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTTTGACAGTGTCACGGATCTTGAGGTTGTTTTATGCAAAGAAGGACATGAGGATCCTGATGGTGGGTCTTGATGC AGCTGGGAAAACAACGATACTCTACAAACTCAAACTCGGAGAAATCGTCACCACCATACCCACTATAGGTTCTATTTGAT CACCCAACTATTGATTGAAATCATCTATCATCTTTTGTCTCTTATTTTATCCCTGTTGTTCTAATTATAAAACAATGCGT CACTAATTGTTTTTCAATTAATAGAACAAAGAAAGACATCCAATATATTGACATTCAATATCTCATATATGCAATCTTCT TCTACATGTCTTTACATGGGTTAATAGTTCATATATTCTAGTACTCGTGCTTAGGGGGAGAATCTAAAATAAATTAGATG CAGTTCTAGACAAATAAATTGGCTAACCAATCAGCAAAAAGTTCCCCTCTCTAGGAATGTGGACAAACTGCAGCTCTCAA TCTTTTTGTTTATCAATTGCAAGGTTTCTTCAAATAAAGCAGAAAGCCTTTGAAACCTGACCTGGGAAGGATTATTGACG AGGGAGTAAACCTCAAGGCAATCAGTTTCACATATAGCTTTCCTCACCCCCATGTTCCAAAGTAGAATCAATCCTTCTTT GAGAGCTTTCACTTCAGACAAAAGCACATCACCATGGCAAGGAAGATGACCAAAGAAACCTTTAGGCCAAACTCCCTTCT CAACACGGACTAAGCCACCAATTGCCATAGAGTTAAGGTTAGGATTGAAGCTCCCATCCATCTTAAGTTTAACAAGAGCA GATGGAGGGCGTCAAGACAGGCTAATTAAGATTAGAGTAGCTTGGATAGCAAGTTCCCAGGTAGTCAACATAATCATCAA ACTCAGTACAAATATATCGCCATGCAATCCTGAAGTTCCAAGGTGAAGCATAAAAAATTAAACCGTTTCGAGTGGCAATG AAAAGTGTAGCATGAAACCCCGTCAATTGAGAGATGACCAACAAGGAGTATCATGAACTAGAAAGTTCCTCCAACTAAGA GCCCATTTTTAGCCAAATTTACTTAGAATTCAGACAATCTCTAAGGCAATGCAAGATATCCTCCTGAACATGCAAACACT TAGTACAAGAAGCAGAAGGAGACAAGTTGCAGTGATGACTCAACAGTTAGAGATTGAGGTAACCAGCGAAAAGCATCTTT AGAAAAATAACAACCATCCTTCCCAACCCACAGATCCTCCTTATCAGCAGATAATATCGCGGAACAGGCAGGGAGCTGGT CTGTGATGAAGCTTGGCAGAAGAGTATGTCCAATGGAACAAGAATTTGGTTGCTTATTGTTTTTTTCATTGCAAACTGAA AGGGTTTGTGATTTTAATATAAACAATGCCCCTTATATTTATAGAAGTAAGAAACAGTGGAGATATATATATATTTTTAC AATGAGTTCTAAGTGAAAACCATTGAACTTAGCATAATTTATTTTCTCTAATGAATCAGGTTTCAATGTGGAGACTGTTG AGTACAAAAATATAAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGGTACTACTATCTGTGATTTTCCGGCCTCAA TTTTAATTACCTTGTGATGAAGCTTTGAGTGTATCTAAGTTTGTTAAGTGTTTGATCTCTAATTGAAATCCGGATACTGG TGTATCTATGAGAGACAACTCTAAACTCTTGATCTGATTATATTGGGAAATTGTTGTATGAATGTAGATTCGACCTTTGT GGAGACACTACTTTCAGAATACACAAGGTGTTATCTTTGTGGTAGATAGTAACGACAGAGAGAGAATTTCAGAAGCCAGA GATGAGCTCCATAGAATGCTGAGTGAGGATGAACTTCGTGATGCTACATTACTGGTATTTGCCAATAAGCAAGACCTTCC AAATGCTCTGAGAGTTTCAGAAATTACAGATAAACTTGGTCTGCATTCACTCCGACAGCGTTGTTGGTAATTAATCACAT TTTAATTAGAACAAAGTCATATTTTAATTCCATGAGAAAAATGTGCAATGAACTTAGTCTAGCTAGTTATTTGATTGGTT CTGCAGGTTCATCCAGGCAGCTTGTGCAACATCAGGCCAAGGACTCTATGAAGGACTTGATTGGTTATCCAGTAATATAC CTAACAAAGGAAGATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0405000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTTGACAGTGTCACGGATCTTGAGGTTGTTTTATGCAAAGAAGGACATGAGGATCCTGATGGTGGGTCTTGATGC AGCTGGGAAAACAACGATACTCTACAAACTCAAACTCGGAGAAATCGTCACCACCATACCCACTATAGGTTTCAATGTGG AGACTGTTGAGTACAAAAATATAAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGATTCGACCTTTGTGGAGACAC TACTTTCAGAATACACAAGGTGTTATCTTTGTGGTAGATAGTAACGACAGAGAGAGAATTTCAGAAGCCAGAGATGAGCT CCATAGAATGCTGAGTGAGGATGAACTTCGTGATGCTACATTACTGGTATTTGCCAATAAGCAAGACCTTCCAAATGCTC TGAGAGTTTCAGAAATTACAGATAAACTTGGTCTGCATTCACTCCGACAGCGTTGTTGGTTCATCCAGGCAGCTTGTGCA ACATCAGGCCAAGGACTCTATGAAGGACTTGATTGGTTATCCAGTAATATACCTAACAAAGGAAGATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0405000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLTVSRILRLFYAKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH YFQNTQGVIFVVDSNDRERISEARDELHRMLSEDELRDATLLVFANKQDLPNALRVSEITDKLGLHSLRQRCWFIQAACA TSGQGLYEGLDWLSSNIPNKGR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 181 181 8.3E-126 –
PANTHER
PTHR11711:SF314
1 180 180 1.0E-130 –
SMART
SM00178
1 177 177 1.5E-26 –
PANTHER
PTHR11711
1 180 180 1.0E-130 –
Pfam
PF00025
10 177 168 1.1E-77
IPR006689
ProSiteProfiles
PS51417
11 177 167 24.776 –
SUPERFAMILY
SSF52540
15 179 165 3.09E-56
IPR027417
TIGRFAM
TIGR00231
16 139 124 5.8E-23
IPR005225
Gene3D
G3DSA:3.40.50.300
18 177 160 1.2E-70 –
SMART
SM00175
18 169 152 0.0022 –
CDD
cd04150
18 176 159 4.6713E-121 –
PRINTS
PR00328
19 42 24 2.8E-20
IPR006689
PRINTS
PR00328
47 71 25 2.8E-20
IPR006689
PRINTS
PR00328
74 99 26 2.8E-20
IPR006689
PRINTS
PR00328
119 140 22 2.8E-20
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0405000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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