Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405000 |
| Transcript ID | LotjaGi2g1v0405000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RP/EB family microtubule-associated protein; TAIR: AT5G67270.1 end binding protein 1C; Swiss-Prot: sp|Q9FGQ6|EB1C_ARATH Microtubule-associated protein RP/EB family member 1C; TrEMBL-Plants: tr|I3S6W4|I3S6W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0405000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90189722..90191625) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCACCAACATTGGAATCATGGATGCTGCTTACTTCGTCGGCAGATCTGAGATCCTTGCTTGGATCAATTCAACTCT CCAACTCAATCTCTCCAAAGTCGAAGAGGTAAACACGATTTGCCATCTGAATTTGAACTTCTCTGTTCCGATTTAGGGTT TCGTGCTTATTCGATTCCATCTTTTCAGGCTTGTTCCGGTGCGGTTCACTGTCAGCTTCTGGATGTTGTTCATCCCGGGA TCGTGCCTATGCACAAGGTCAATTTCGATGCTAAGAACGAGTACGATATGATTCAGAATTACAAGGTGCTTCAAGATGTC TTCAACAAACTCAAAATCACTAAGGTAACTGCTCTCTCTCTCTCTCTCTGATCAATCGAAGTCTATTTCATCGATTTGAA TTCTGATGATCTTCAATTCGTTTGTTGAATTTTCTGTTCTCAGCACATCGAGGTCAGCAAGCTAGTGAAAGGAAGGCCTC TGGATAACCTGGAGTTCATGCAATGGATGAAGAGATACTGCGATTCTGTCAATTCTGGACTTCAGCACAAGTAATTCCAT GATCCATCCATTAGTCACTACTCTAGATTTCATGCTTGTATGTGATGTGTGTGTATGGTTGCAGTTTTCTGAAACTAACC TCGCTTGCGTGAAATATTTCTTTAGATTGATAATTTAGGGTCTATTACTGAAATTCTGTAACATATAATTAGGGCTCAAG AGAATTAGGTTTTAAGATTGAAATTTTGCAATTTGCAATTCTACGGACCAAGGTTGTTAATGGCGGTGAGCCCCCAGGGC GCTACGCTATAGGCTGTTGCGCTGCTATAGCGCGCTATTAACAAGCTTGCTTCGGACATATAATTAGGACTCATGAGAAT TAGGTTTTAGGATTGAAATTTTGCAATTTGCAATTCTACAAACATTATTAGGAATCAAAAATTTGGTCTTAGTATTGACT ATTGAGATATCTTGGCTGTTGAATCCTGTAAAGTCATGTTTTGATATATTGATAGTATGAGAAGAACTTGTAAGCTTGAA TGCTTGATTGGGAAAAAATTTGGGGTACTAAATGTTTCGAAATTGCTATGTGTGTGTTCTTGTTTTAGTTATAATCCTAG GGAAAGGAGAGAGGTATGCAAGGGAGGTAAAGAGGCAACCAGAAAATCTGCGCACTCCCAATCGTCGAACAAGGGTTCTA CTGCACAGAGGCCTCCGTCTTCCCACAATTCTCGAAGAAATGAGGCATCTGCTGCTGCAAACCATGCAACTCAGGCTGCA AAGGTTGCTAAACCTTCTTCTGCTGCGGCCCCTGCTTATGATGAACAGGTATTCTGTTTTCAGTTCACATGTAAATAACA ATTATCAAGTGATTTGTGATGGATTGTACAGTGGTTCTTACACTGAAGTCAATGCAGATAACGGAGCTGAAGCTATCCAT TGATAGCCTTGAGAAAGAACGGGATTTCTACTTTGCAAAACTGAGAGACATTGAGATCCTGTGCCAGATTCCTGAGATAG AGAATTCACCAGTACTGTGTTCTCAAACTCTCTAATTTGGTTATTGAAACCAATTTAATAATTGGGTCATGGTTATTAAT GTGATTGTGATTCATTATGATTCAGGTTGTTGCGGCTATGCAGAAGATATTGTATGCTACTGATGATGATGGAACAGCTG TGGCTGAAGCTCAAGCCATGCTTTCTGCTGCTCATGAAGAAGTCGAGCGGTTGAGCCCCATTGCTGAGGTTTCCGAGGAG AAGAGCAGTTCAGAAACTCACAAGAGAAAGAGCATTTCCAATCTTGAATTTGATGCTGCTGGCGTCAAGAATTTGTCTCC CAGACAAAGGCTTTCTGATGTCTCAGATGTTCATTGTAGCGAGTCACCTCTTATGACTTGTTAA
CDS sequence (LotjaGi2g1v0405000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCAACATTGGAATCATGGATGCTGCTTACTTCGTCGGCAGATCTGAGATCCTTGCTTGGATCAATTCAACTCT CCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCCGGTGCGGTTCACTGTCAGCTTCTGGATGTTGTTCATCCCGGGA TCGTGCCTATGCACAAGGTCAATTTCGATGCTAAGAACGAGTACGATATGATTCAGAATTACAAGGTGCTTCAAGATGTC TTCAACAAACTCAAAATCACTAAGCACATCGAGGTCAGCAAGCTAGTGAAAGGAAGGCCTCTGGATAACCTGGAGTTCAT GCAATGGATGAAGAGATACTGCGATTCTGTCAATTCTGGACTTCAGCACAATTATAATCCTAGGGAAAGGAGAGAGGTAT GCAAGGGAGGTAAAGAGGCAACCAGAAAATCTGCGCACTCCCAATCGTCGAACAAGGGTTCTACTGCACAGAGGCCTCCG TCTTCCCACAATTCTCGAAGAAATGAGGCATCTGCTGCTGCAAACCATGCAACTCAGGCTGCAAAGGTTGCTAAACCTTC TTCTGCTGCGGCCCCTGCTTATGATGAACAGATAACGGAGCTGAAGCTATCCATTGATAGCCTTGAGAAAGAACGGGATT TCTACTTTGCAAAACTGAGAGACATTGAGATCCTGTGCCAGATTCCTGAGATAGAGAATTCACCAGTTGTTGCGGCTATG CAGAAGATATTGTATGCTACTGATGATGATGGAACAGCTGTGGCTGAAGCTCAAGCCATGCTTTCTGCTGCTCATGAAGA AGTCGAGCGGTTGAGCCCCATTGCTGAGGTTTCCGAGGAGAAGAGCAGTTCAGAAACTCACAAGAGAAAGAGCATTTCCA ATCTTGAATTTGATGCTGCTGGCGTCAAGAATTTGTCTCCCAGACAAAGGCTTTCTGATGTCTCAGATGTTCATTGTAGC GAGTCACCTCTTATGACTTGTTAA
Protein sequence (LotjaGi2g1v0405000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKVNFDAKNEYDMIQNYKVLQDV FNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGLQHNYNPRERREVCKGGKEATRKSAHSQSSNKGSTAQRPP SSHNSRRNEASAAANHATQAAKVAKPSSAAAPAYDEQITELKLSIDSLEKERDFYFAKLRDIEILCQIPEIENSPVVAAM QKILYATDDDGTAVAEAQAMLSAAHEEVERLSPIAEVSEEKSSSETHKRKSISNLEFDAAGVKNLSPRQRLSDVSDVHCS ESPLMTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 1.1E-119 | – | |
| PANTHER | 1 | 266 | 266 | 1.1E-119 | ||
| Gene3D | 4 | 132 | 129 | 2.4E-47 | ||
| SUPERFAMILY | 5 | 131 | 127 | 6.68E-42 | ||
| ProSiteProfiles | 13 | 115 | 103 | 17.979 | ||
| Pfam | 16 | 109 | 94 | 2.7E-10 | ||
| MobiDBLite | 128 | 142 | 15 | - | – | |
| MobiDBLite | 128 | 191 | 64 | - | – | |
| MobiDBLite | 143 | 175 | 33 | - | – | |
| ProSiteProfiles | 183 | 253 | 71 | 15.637 | ||
| Coils | 191 | 211 | 21 | - | – | |
| SUPERFAMILY | 194 | 250 | 57 | 8.63E-19 | ||
| Gene3D | 200 | 228 | 29 | 1.7E-6 | ||
| Pfam | 208 | 246 | 39 | 4.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi2g1v0405000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…