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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405600 |
| Transcript ID | LotjaGi2g1v0405600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein LTV1 like; TAIR: AT3G49990.1 Low temperature viability protein; Swiss-Prot: sp|Q4V838|LTV1_XENLA Protein LTV1 homolog; TrEMBL-Plants: tr|A0A0L9TRI3|A0A0L9TRI3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90226992..90233922) extracted from Lotus japonicus Gifu genome v1.2.
AATCTATCCAAGATACAAAAGCGCCAGAGAAAACACACTTACACGTTTCGCGCAGCCACAGTAAAGGTTAGTACGAATCT CCCTAAACCTTACTCCTTTCTTCCCCTACCCTCCCGCCGCACTCCGGCGTCGCCGTCGCACCGGCCTCCAGGGAACACCT GACAAGGTCGAGGTCCGCTCGCTACACGGCCTGTCGAGCCTTCGCGCTCACACGTCCCGGGTCGGCGGCGTTTCGCTGAA GTGGCAAATAGCTTCAATCTCTAACTTGTTGTAGTTAGTTCTGCATCTTTTACCCACAACCCTTAATTTCTTAGTTCTAC TGCTACGAGTTTCACATGTTCATTTTTCTGATCATAATCTGGTATCTTGATACAATCTCCATGTTAATTTGCTGCTAACT TAGGTTTACAGTGAGGAGTTTCATTCAGCTTATTTTTTTGATTATTTTCATGTCTTATTCTACTGTGAATTCCCTAGCTC TTGAATAAATAAAATATCATTTGCTGGTAATTGTATTCTTTGATCTTGGCCCCTAGTCTCAAATCCATGCTACTAATTGT ATTGTGGGGTTTATATGCAGCCGCAAACAAAGCGCAATCAAAAATACTCTACTATCATTTCATCAAACACTTGAAAGTTG AAAGGAATAGGCATTAGTAATATAGATAATGGGGAAGAAGAAATTCATTGACAAGAGAAATGCTGCTACTTTCCAACTTA TTGCTCGTGACTCCTCGGACCCAGCATTCTCCACCTCGGACCGTGTCTTCGTCCGAGTTGACAACAATCCCCTTTCCAAT GACTCTATTTTTGATGATGCCCCCGAGGACTGTGATGACAATGACAGCCTCAACGGGGATGAAGGTGCGTTGCCAGATGA TGTGAGGAGGGAAATTCTAGAACTAGGGTTTCCGGATGATGGCTATAACTACTTGGATCATATGAGGGAAATTAAGAATA CTGGTGGTGGTTCTGCTTTCTTTAACAACCCCAAGTTCAAGCTTCAACACGTTCCTCGTGATATTAAGGTGGTGCTGCTC TTCACTTTTCTATTAGATTTGTTTTGAAAGATCATGGATATTTATGAGTTTTTTTTCTTGGTGATTCAGGCGTATGATGC TTCGAGATTACAAATTTCAGAGGCGGATAAAGAGCCCGAGGAAAACACTATATACACTGTTGCAGCCAAGACTACCAGCA TAAGGGTTCAGAAAGCAATTGATCCTGAAGTAGCTGCGCTGCTTGATGATACTGATTTGTCACGGTTTGGTTCTGATGTT GAAGATTTGGAGGAAGACTTTGTTGTACAAGCTAACCTTGATGAGGATGAAAATGATGAAGAGAAGGAGCCTATATGTAA TGGTACAAAATTTGCTGAAGAATCTATGATAAGTAGAAGCGAAAACAATGCACAAGTATTGCAAGTTTCTGCTCATTCCA GAGTTATAGATGACTATGGATCTTTGGATGGGGTAACAAATAACGAAGCAGGAGAGGACTGTGCTGGTGACAAACCGAGA GCTCGTCGTTTGTTGGATGAACAATTTGATTTAGTGAGTTCAGCTATTTACATATTTCCAATCTAGTTTATTCACATTCT GTATTCTGGCTCTCTGGTGTTTGCTCATACTTTATTATTTGATGAAGTATGTTGAGCCTGTTTGTATTTTTTTTTATCCA AGGATGCTTTTGCCAAATTCCATCCTTTGTTGTCATTTCAACTGCAGATTAAACTTTATTGACTGATTCTGCACTTTTTT ACTTTTAAGATTCTCATTCTCAGTATGTTTTCTGATGTAGCTGGAACGTCAAGAGTATGCAACCGATGATTACGGTGAAG ATGATGATGATGATGGTGAACTTTATGGAAATTATCAAGCTGAAGATGAGTTCCTTGCTGAGAAGCTCAAAGCCTCTCTT AACAACCACACGATGGACAGCCTAGAACCTGATGACGACACTTACAAGGTTCCTGCAGATTTATTGAAGAAAAATGAGGC CCCAAATAGCGAGGAGCAAGAGGACTTTGCTGCTGATTTGATTCGCCGTACTAAGGAATATGGTGAGGGGTATGAAGTTG AAGATGAAGATAAGGATGTTATACTTGTCCAAGAAAGTAGTGATGAATCAGAAGTTTGGGATTGTGAGACTATTGTTTCA ACGTACTCAAATCTAGATAACCACCCTGGGAAGATTGAAGCTCCTGGTGTAGCTAGGAAAAAGAAATTGGCTGAAACTAT GTCTGCAGCCTTGAGTTCCTCTAGTCCAATAATTTCCCTGAGGGGAAAAGAGAAACTCCCTGTAGACTTCTTGCCTGGGG CTAAAAAACCTGCTACTGAAAAGGTTAAAGGCCCGAGCAATGCAAGTACTGAGCAGTACAAGAGAAAACAACATGGCCTA GAGTCAAAGGAGGAGAAGAAAGAACGAAAGGTGTCTGTATTACTTGCTCTGCTTATCCTACTAGAGTCCAGATACTTCCT TTTATGCATGCAGTAATTATTAACTTTAAGTGAAAACATAGCAGCTGTTATTACCTTAAGAAAAACACCTATGTTTATGT TCGGCTTTTGTACGTCGAACACTTCTGTGACAGGACTAGTTCTGTTGTTTTGTAGGCTGCTGTGAAGGAGGAAAGGCGTG AGGCACGACGCGTTAAAAAAGAAATGAAAGAGCTTTATAAGGGTGAAGCACATCGCGCACAAAGAGCTGCTGCTGTATCT GGTCCTTCTTCCATTCATCTCATGTAAGATTTCAAATTTTAAAATTTTGCTTCTCACTTTACATCATCAATATGATTGGG TAAGAGCCACGTTTTCTGCTTTGAGGAAGAAAATAATGTCCCAGAGCTGCTTAAATGATATTCTATCCATAGTTATCATC CCAGATCATGATACGGAGTGGATGGAAATCAAAGTCAGTTTGAGTGTATCTTTGTTTAAACAGCAACCCAAAATCATGAA AATACCAACATAAAGGATTCAGTGACTTAGAAAATGACAAGCAGCGTCTAGAAAATGACAAACAGTATCCAATGCAATCA AATTCATTTTTTTGTTACTACATACTTATTATTAGATATTTTTAAATCTTAAGAGTGCCAAAGTCTAACAAATTCAAGTG TTATGATGGTTGGCTTTAGATGTTCAAGTCCAGAGACGTTTTACAATGCCTTGACGCATTTAAATTTATGTCAAATTATT TGGTTGTTTTGGATTGTGCTTTAGCCATATGGCAACTTACATTGCAATTTAACATGTCTAGATGATTTCATATATATATA TATGGTATTATTGTCACCAGGAGCATAAATCTACTGTCTACATTTATGCATGTAAATTGACATGTGATGCTCTTAGTGCT CACGTGATGAAGTTGACTAATAGTGATGGTTACATTAGGTTTTGAAGCGTAAACTTTCCCCAATTCTACCATGAATGGGA ATATTTTTTTGAATTTCAACTAATACCCTGAAATGGTGGATTATTTTGTCTCGAGCTCTCACTTTTAATGAGATGGTCAT AATGCTGTGGCTTAATGATTTTGTGAGTGTTAACTTAGTTCTCCTTTTCCTGATTTCTTTATAGGTAAGTTAACAAATAC AAGTACCAGCTCTTTGCTATGGGGAAGCTTGTGAGGTTCTAGGATATTTTCATACATCATTACAAAATTTTGCCACAAGA GTACTTCAGTGTTAACATCGCTGTTCTGGGTTTTTGGTCCAAAGCAAGACGGTACTCGAGTTTGAGTTAAGGTAAAGCAA AATTCGGTACTTTGTTTTGGCAGAGTGAGTATTTGGCTTTTGATTTGTAGAACTAAGTCCGGCAGCCGTGTCCTTTGTTT TGGCCTTAATTATAGACAAAGATATGTACTAATAACTTATTTTATATTTCCGGTAGTTTTAGTTGTGGTTTACTGAAGAA AGGCTAGCAATTTTTCTTTTATGCATTCATATTAACCAAATTGGAATAGAAAGTTGATGATGAGAAATTGAGAATTTTTT TGAGATAGATAATTGATAATGAGAATCAAACTGAACTGTGGACTAGTGATCCTGCACTTATTTTAGCACAAATATTTATT TATTCTACGTACATGCTTTCATAGCTACTTCAAGATGATTATACCTTCTGCATGCCTTCAACAGTTATCACAAAATATCC TTATTTCCCAGCTGTTGACGCATCTTACACATGGCTTCTAATGAAACCTTTTTTGGCACTGTGGCCCCTTTTGCTTCAGT CATATCAATTTCTTTCTCACTTGTTCTCTTCCACTCAAAACATTGAATCAATAAGGCAAGAGTTAATCCCACCGTGCGTT GACCCAAGTTTGTTCCAGGACAAGCCCTTCTCCCTAACCCAAATGTCATTAACTTGTTTGTTTCACCTTCTTTCTCAAAC CTCTCTGGCTTAAAACAAGTAGGATCACTCCACAACTTGGGATCTGTATTAATGGCCCAAGCATTGACCAACACAATTGT GTTTCGTGGGATGTTGTATTCCCCTATGGTGCAATCTTCAGAAGACACATGAGGTAGCAACAACGGAGCAGCAGGGTGCA AGCGAAGTGTCTCATAGACAATGTTTTGAAGGTAGGGAAGTTGTGAAATATCAGCTTCATCTACTAAGCGATGATCTTGT CCTATGTATGTGTCCAATTCATGTTTTTCCTTTTTCAATACTTCTTGATTGTTTAATAAATTAGACATTGCCCATTCTAA AGTTATAGCTGATGTGTCTGTTCCAGCAAGCAGCATAACCTGAAATGTAGGACAGAATATCAACACTACCGAACTCAAAC CTATTTGATAAAAATAAAAAAAACCTTACAATCATATGTAATTTCTCCACGTTTTACTCATGCATTCTAAATATTATGAG TTTGCCTTTATTGATAGATAGTTAGTCTTACACACCATTGCAAAGTTTTATAGCTTTGTGATAGAATTTCCTTTTAAGCT TGGGTGGTATTTTCGATCACGTGTCATAGCAGAAGCATTTCTCCATTTCATTTATAGCCTACTTAATTTAGATCCTATAA TTGACATCTCTCTTTTTTGTCCTTTCGTAAAATGGACCCAAGGCTTGAGAGTATTTCTAAAACTTTATTCTAAAATTGTA TATCTCTTATTTTGACCTCTAAATTAGGTTTTGCCTTTTTTTGTTGCTAAACTTGCATTACGTATTCAATTATACTTTCT GTTAAGTGAAACTCACGTATCCTTTAGAGTTTGTTCACATCAACCACTCTCATTTATTTCTTCTTTCCACTATCCAACTA ACACCTCTTAGATATCTTCCATTATTTTGGGAAAAATCTAATTCATAACACATGTTAATTAAAATAATAATTAACTACAA CTAAAATGATTTTACTCAAGCGATAAGATGGAAGAGAAAGTTAAATAATATGAATCAATAAAATCTCTTACCAGAACAAG TCCTTTGATGATTTGATCCGTGTAGTACTCAGGCTGTGATTGTTGTTGGGTGAGGAGATGGTCTATCATGGTGGTAGCAT TGCCACACTTCTTCGTCCCATCACGATGCTCATCAATGAGTCCCTGTAAGAACGCATCAGTTCTCTTACCTAACCTCTTC AACCTCTTCACCAGCCCATCAAAATCAAACCACCTCAACAAACCAATGAAATCTCCAGGGTTGTTAGCCCCTCCCAACAT AACAATCTCCTTGATAATTTCCCTGAATACCCTCGCTTCCTCCGCTTCACTCACGTCACAGTCCTCACCGTAGTACCTCT TCCCGGAAACCATCCTCATCACCGTGTTAAACGTCATTTCAGAGAACAACAATCTCAGCTCCACCTTCACATAACCACCG TCACCGCACGTGCTGTCACGTGCGAGCTTCTGCATCATTCTCATCACTTCGTCTCTTCGAAGCTCCGTGAACGTGTTGAG GCGGTGCGAGGAGAGGACTTCGAGGGATAAGATGCGGCGGAGGTTGCGCCAGTGGTCGCCGTACGAGGAGTTCAAGACGG TGGTGTTGTTGTAACTGATGTACTTGCCGAGGAGGAAAGAAGGCCGGTTTGCGAGGACTATGTCGTTTCTGGTGAAGCAT TCTTGCGCGGCGGAGGAGGATGAGACGACGACGACGAGGCGGGAGCCAAAGCGGAGAGAGAAGATTTGGCCGTAGGTTTG GGAGAGGGTGTGGAAAGTGCGGTGGAAGGGTTGTTGGAGCTGGTGGAGGTTTCCGATTATGGGGAGACAGGGTGGGCCTG GGGGGAGGTTGTGGAGTCTTCTTGTGCGGAAAAATGTGAGTAGTAAAAGAAAGAAAGAGATGAGAGGGACGATGAGGAAG AAGGGGGCCATGGTTATGGTTGAGACTTGAGAGTTGAAGCTAAATTGATATGTATCTAGCGAGAGAGAGATATATAGATG AACGATGAGGTTACTTAATCACACATGTTCATTGTAATGTGGAGTGTCAATTCGATTCTTTTGATGGTGTTACTCTTGTG AATTATACTTCTTGGGCTCGACACATTTATGCTTCTCTTATTTAGGATATTAAGGATTTATTGGACCGTGAATGGAGTGT AGTGGTGTTGCATATTTTCAGGGAGGCGAATGCGTGTGCTTATTTTTTAGCCAAGTTTGGTGCTGTTCAGAATGATAGCC TTGTCTCTATTGACAAACCCTTAGATGGGATGAGTCTCTTGTTATTAGCTGACTCTATGCGTGTCTCCTTTGTAAGGATT TAGGCTGGGTTTTCCCATTTTCCTTTTTTGTTTTTTAACTACTGTAAAAAAAAATATTAAGTATATGGTTGTCTAGATGA CTCATGTAGGTTACTAACCCAACACTCAATGGACTAATATAATTTTTTATAAATAAAATATAAAAAGTTCAACTCACTTA TCTTTAAGGTGACGAGATAATGAATTATTTAACCTAAATTTTCTCATGTGC
CDS sequence (LotjaGi2g1v0405600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAGAAATTCATTGACAAGAGAAATGCTGCTACTTTCCAACTTATTGCTCGTGACTCCTCGGACCCAGCATT CTCCACCTCGGACCGTGTCTTCGTCCGAGTTGACAACAATCCCCTTTCCAATGACTCTATTTTTGATGATGCCCCCGAGG ACTGTGATGACAATGACAGCCTCAACGGGGATGAAGGTGCGTTGCCAGATGATGTGAGGAGGGAAATTCTAGAACTAGGG TTTCCGGATGATGGCTATAACTACTTGGATCATATGAGGGAAATTAAGAATACTGGTGGTGGTTCTGCTTTCTTTAACAA CCCCAAGTTCAAGCTTCAACACGTTCCTCGTGATATTAAGGCGTATGATGCTTCGAGATTACAAATTTCAGAGGCGGATA AAGAGCCCGAGGAAAACACTATATACACTGTTGCAGCCAAGACTACCAGCATAAGGGTTCAGAAAGCAATTGATCCTGAA GTAGCTGCGCTGCTTGATGATACTGATTTGTCACGGTTTGGTTCTGATGTTGAAGATTTGGAGGAAGACTTTGTTGTACA AGCTAACCTTGATGAGGATGAAAATGATGAAGAGAAGGAGCCTATATGTAATGGTACAAAATTTGCTGAAGAATCTATGA TAAGTAGAAGCGAAAACAATGCACAAGTATTGCAAGTTTCTGCTCATTCCAGAGTTATAGATGACTATGGATCTTTGGAT GGGGTAACAAATAACGAAGCAGGAGAGGACTGTGCTGGTGACAAACCGAGAGCTCGTCGTTTGTTGGATGAACAATTTGA TTTACTGGAACGTCAAGAGTATGCAACCGATGATTACGGTGAAGATGATGATGATGATGGTGAACTTTATGGAAATTATC AAGCTGAAGATGAGTTCCTTGCTGAGAAGCTCAAAGCCTCTCTTAACAACCACACGATGGACAGCCTAGAACCTGATGAC GACACTTACAAGGTTCCTGCAGATTTATTGAAGAAAAATGAGGCCCCAAATAGCGAGGAGCAAGAGGACTTTGCTGCTGA TTTGATTCGCCGTACTAAGGAATATGGTGAGGGGTATGAAGTTGAAGATGAAGATAAGGATGTTATACTTGTCCAAGAAA GTAGTGATGAATCAGAAGTTTGGGATTGTGAGACTATTGTTTCAACGTACTCAAATCTAGATAACCACCCTGGGAAGATT GAAGCTCCTGGTGTAGCTAGGAAAAAGAAATTGGCTGAAACTATGTCTGCAGCCTTGAGTTCCTCTAGTCCAATAATTTC CCTGAGGGGAAAAGAGAAACTCCCTGTAGACTTCTTGCCTGGGGCTAAAAAACCTGCTACTGAAAAGGTTAAAGGCCCGA GCAATGCAAGTACTGAGCAGTACAAGAGAAAACAACATGGCCTAGAGTCAAAGGAGGAGAAGAAAGAACGAAAGGCTGCT GTGAAGGAGGAAAGGCGTGAGGCACGACGCGTTAAAAAAGAAATGAAAGAGCTTTATAAGGGTGAAGCACATCGCGCACA AAGAGCTGCTGCTGTATCTGGTCCTTCTTCCATTCATCTCATGTAA
Protein sequence (LotjaGi2g1v0405600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKKFIDKRNAATFQLIARDSSDPAFSTSDRVFVRVDNNPLSNDSIFDDAPEDCDDNDSLNGDEGALPDDVRREILELG FPDDGYNYLDHMREIKNTGGGSAFFNNPKFKLQHVPRDIKAYDASRLQISEADKEPEENTIYTVAAKTTSIRVQKAIDPE VAALLDDTDLSRFGSDVEDLEEDFVVQANLDEDENDEEKEPICNGTKFAEESMISRSENNAQVLQVSAHSRVIDDYGSLD GVTNNEAGEDCAGDKPRARRLLDEQFDLLERQEYATDDYGEDDDDDGELYGNYQAEDEFLAEKLKASLNNHTMDSLEPDD DTYKVPADLLKKNEAPNSEEQEDFAADLIRRTKEYGEGYEVEDEDKDVILVQESSDESEVWDCETIVSTYSNLDNHPGKI EAPGVARKKKLAETMSAALSSSSPIISLRGKEKLPVDFLPGAKKPATEKVKGPSNASTEQYKRKQHGLESKEEKKERKAA VKEERREARRVKKEMKELYKGEAHRAQRAAAVSGPSSIHLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 521 | 521 | 9.2E-120 | ||
| Pfam | 8 | 209 | 202 | 3.1E-9 | ||
| MobiDBLite | 44 | 66 | 23 | - | – | |
| MobiDBLite | 49 | 64 | 16 | - | – | |
| MobiDBLite | 438 | 521 | 84 | - | – | |
| MobiDBLite | 462 | 504 | 43 | - | – | |
| Coils | 471 | 501 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosomal small subunit biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi2g1v0405600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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