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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0406100 |
| Transcript ID | LotjaGi2g1v0406100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter; TAIR: AT2G23150.1 natural resistance-associated macrophage protein 3; Swiss-Prot: sp|Q9SNV9|NRAM3_ARATH Metal transporter Nramp3; TrEMBL-Plants: tr|I1J9B4|I1J9B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0406100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90314071..90316910) extracted from Lotus japonicus Gifu genome v1.2.
CTACCATTAACGATGCCTCCTCAAGATAACGAACTACCTCTGCTACTTAATTCCCGAGAAGAAGAAACCGCTTACGATTC ATCTCAGAAGGTCGTGGTGGTTGGGATCGACGAGCGCGACGACGGTGACCTTTCGCCTCCGTTTTCATGGAAGAGGCTCT GGCTCTACAGTGGTCCTGGTTTTCTGATGAGCATCGCTTTTCTCGATCCTGGGAATCTCGAGGGGGATCTTCAGTCTGGT GCCATTGCTGGCTACTCGCTGCTTTGGCTCCTCATGTGGGCCACCGCTATGGGACTCATTATTCAGCTCTTGTCGGCGAG GCTTGGTGTCGCCACCGGGAGGCACTTGGCGGAGCTTTGCAGGGATGAGTATCCGTTTTGGGCTAGGATTGTGCTGTGGT TGATGACTGAGGTGGCTTTGATTGGTTCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATCAGGATTCTGAGTAAT GGTCTTGTTCCTCTCTGGGCTGGGGTTGTCATTACAGCTTTAGATTGGTAATTAATTTCGCTTTCTCTCTTCCTTAATTG TGAAAATAAATGATGAATTTGCATTTTTTTGAATTTCACTGGTGATTCATTTGTCTAGTTTGTTTGCTGAATCTCTAAGG TTTAGTAACCGTCGAGGATCTTATAGAATTTTACAATTTCCTGTTTTTCAAGTTCCATTTGAAGTTCCTGGATTATAGTC TACAAAATATAGATAATTTGTCTTATCATTGTAATGGAATTGGATTTTCTTGATTAAAATGCTGGGACCGAAGTGGGTTG TATATCGCTTTCTGGAGAATGAAATATCAACTAAACTTTTTGGGAAGAATTTATTGCCAGATATTATTAAGATCTTAATC AGAAATAATGAAAAGTATATTCATAAATGTCTTTTCTGTTCCAGCATTTTAGAAGTTGCTAGAGCAAGCAATTTTACTAG TTAAACCATGTATAGTATTACAAATTAACTTCTGTATTGTTGTTGTGTTGTTACAGTTTTGTTTTCCTCTTTCTTGAGAA CTATGGTGTGAGGAAATTGGAAGCATTTTTCGCGGTTCTGATTGGTTTAATGGCTCTCTCATTTGCGTGGATGTTTGGTA AAGCAAAGCCTGATGGTGTTGATGTTCTTCTTGGTGAGGAGTCTATTTTGTTAGTGCAAATTTTACTTCTTAATAAGAAA AATTCTCAGGTGTGATCTTACTTTATAACTGATAGATGCTCTTATTTTATCTCTGTAGGTGTATTGGTCCCTAAACTGAG CTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGCTGTATTATTATGCCTCACAATGTATACTTGCATTCTGCTCTTG TTCAATCAAGGCAGATTGACCACACCAAGAAAGGCCGTGTCCAAGAAGCTCTTAATTACTACTCTATCGAGTCCACTATT GCTCTTGTAGTCTCCTTTGTCATTAATATATTTGTCACAACCGTGTTTGCTAAGGGCTTTTATGGAACTGAAATAGCAAA CCGCATTGGTCTTGTAAATGCAGGGCAGTATCTTCAGGAGAAGTATGGGGGTGGAGTATTCCCAATCCTATATATATGGG GTATTGGGTTATTAGCAGCCGGTCAAAGTAGCACTATTACTGGTACATATGCAGGACAATTCATTATGGGGGGTTTTCTG AATTTAAGGTTGAAAAAATGGATGAGGGCATTAATTACACGGAGTTTTGCAATCATTCCAACCATGATTGTCGCTCTTAT ATTTGATACCTCAGAGGAATCATTAGATGTTCTAAATGAATGGCTTAATGTTCTTCAGTCAGTGCAGATCCCCTTTGCAC TCATTCCCTTGCTTTGTTTGGTGTCAAAGGAACAGATAATGGGCAGTTTCAAAATTGGTCCTGTCCTCAAGGTATATTAT CCTGGTTTTACCAGTTACCCCCATTTTCTGTTTATGTATTGCATTAAATACTTTAAAATGCTAGATTATTTCATTTGATA TGAAGTCATCATCTGTATATCCCTTTATCTATGTGGGTTATCAATTGGATACAACCTAGGAAAATGTTAATTAAAGAATG TCTCGATGTAGACTTTTTTGTCTTGCTTTTCGGCAGGAGGTAGTTCAGAACTGGCCTGGCACACCTAGTTTTTCTCGTCA CTCAAAGTTAGATTTTAAAAAGACAAATTTGTTACATAATTTTACTCTCTTGTCTTGAAAACTGAAAGGAAGTAAGATGG TGGAATATGTACATTGAACTAGTATCACTACTTTCCATTTTGACCCTTATCTTCTAAATAACTACTCCTGCATCATTATT AGCAGTTAACATAGAACTATGCTTTCCTGTGTCCTTTTTGCTGCATATTATTATTCACAATATCCTATATTATGAAGTTT ATTAAGTTTTGCTGCAATTGGAAACTGCATATGATTCAGCACTGGCATGAATGAGAAAGGGCTTGTATTTATATGTATTA TAAATAGTGTCCATCTGTGAGATTTTGATCATTTTCTACTTAACGCGAATATGATTATTATTCTTAACAATATTGTTAAT TTGATCCTTTGACTTTTGAAAGTGTTCTTAAAGCCATGACTGTTTTATGATATGGACACAGATTGTTTCCTGGCTTGTGG CTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTATTCGCTACT ATAGTATGCGTATTAACAGCTGCATATGTTGCGTTTGTACTTTACCTTATTATACGGGACATCGCATTTTCACCTTGGAA CAGTTTAACACGATCTAAGACAGTTGACACAGGGAATTGA
CDS sequence (LotjaGi2g1v0406100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCCTCAAGATAACGAACTACCTCTGCTACTTAATTCCCGAGAAGAAGAAACCGCTTACGATTCATCTCAGAAGGT CGTGGTGGTTGGGATCGACGAGCGCGACGACGGTGACCTTTCGCCTCCGTTTTCATGGAAGAGGCTCTGGCTCTACAGTG GTCCTGGTTTTCTGATGAGCATCGCTTTTCTCGATCCTGGGAATCTCGAGGGGGATCTTCAGTCTGGTGCCATTGCTGGC TACTCGCTGCTTTGGCTCCTCATGTGGGCCACCGCTATGGGACTCATTATTCAGCTCTTGTCGGCGAGGCTTGGTGTCGC CACCGGGAGGCACTTGGCGGAGCTTTGCAGGGATGAGTATCCGTTTTGGGCTAGGATTGTGCTGTGGTTGATGACTGAGG TGGCTTTGATTGGTTCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATCAGGATTCTGAGTAATGGTCTTGTTCCT CTCTGGGCTGGGGTTGTCATTACAGCTTTAGATTGTTTTGTTTTCCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGA AGCATTTTTCGCGGTTCTGATTGGTTTAATGGCTCTCTCATTTGCGTGGATGTTTGGTAAAGCAAAGCCTGATGGTGTTG ATGTTCTTCTTGGTGTATTGGTCCCTAAACTGAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGCTGTATTATT ATGCCTCACAATGTATACTTGCATTCTGCTCTTGTTCAATCAAGGCAGATTGACCACACCAAGAAAGGCCGTGTCCAAGA AGCTCTTAATTACTACTCTATCGAGTCCACTATTGCTCTTGTAGTCTCCTTTGTCATTAATATATTTGTCACAACCGTGT TTGCTAAGGGCTTTTATGGAACTGAAATAGCAAACCGCATTGGTCTTGTAAATGCAGGGCAGTATCTTCAGGAGAAGTAT GGGGGTGGAGTATTCCCAATCCTATATATATGGGGTATTGGGTTATTAGCAGCCGGTCAAAGTAGCACTATTACTGGTAC ATATGCAGGACAATTCATTATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAATGGATGAGGGCATTAATTACACGGAGTT TTGCAATCATTCCAACCATGATTGTCGCTCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTAAATGAATGGCTT AATGTTCTTCAGTCAGTGCAGATCCCCTTTGCACTCATTCCCTTGCTTTGTTTGGTGTCAAAGGAACAGATAATGGGCAG TTTCAAAATTGGTCCTGTCCTCAAGATTGTTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGC TGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTATTCGCTACTATAGTATGCGTATTAACAGCTGCATATGTTGCGTTT GTACTTTACCTTATTATACGGGACATCGCATTTTCACCTTGGAACAGTTTAACACGATCTAAGACAGTTGACACAGGGAA TTGA
Protein sequence (LotjaGi2g1v0406100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPQDNELPLLLNSREEETAYDSSQKVVVVGIDERDDGDLSPPFSWKRLWLYSGPGFLMSIAFLDPGNLEGDLQSGAIAG YSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCRDEYPFWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVP LWAGVVITALDCFVFLFLENYGVRKLEAFFAVLIGLMALSFAWMFGKAKPDGVDVLLGVLVPKLSSRTIQQAVGVVGCII MPHNVYLHSALVQSRQIDHTKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKY GGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEESLDVLNEWL NVLQSVQIPFALIPLLCLVSKEQIMGSFKIGPVLKIVSWLVAALVIVINGYLLLEFFSSEVNGAVFATIVCVLTAAYVAF VLYLIIRDIAFSPWNSLTRSKTVDTGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 48 | 48 | - | – | |
| PANTHER | 19 | 506 | 488 | 0.0 | – | |
| PANTHER | 19 | 506 | 488 | 0.0 | ||
| Hamap | 35 | 457 | 423 | 38.024 | ||
| TIGRFAM | 48 | 425 | 378 | 5.8E-129 | ||
| Phobius | 49 | 66 | 18 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Pfam | 70 | 431 | 362 | 3.2E-120 | ||
| Phobius | 78 | 101 | 24 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 102 | 121 | 20 | - | – | |
| TMHMM | 121 | 138 | 18 | - | – | |
| Phobius | 122 | 139 | 18 | - | – | |
| PRINTS | 128 | 154 | 27 | 1.4E-81 | ||
| Phobius | 140 | 158 | 19 | - | – | |
| TMHMM | 158 | 177 | 20 | - | – | |
| PRINTS | 158 | 177 | 20 | 1.4E-81 | ||
| Phobius | 159 | 178 | 20 | - | – | |
| Phobius | 179 | 189 | 11 | - | – | |
| PRINTS | 183 | 204 | 22 | 1.4E-81 | ||
| TMHMM | 189 | 206 | 18 | - | – | |
| Phobius | 190 | 208 | 19 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 247 | 20 | - | – | |
| TMHMM | 228 | 247 | 20 | - | – | |
| PRINTS | 232 | 255 | 24 | 1.4E-81 | ||
| Phobius | 248 | 267 | 20 | - | – | |
| TMHMM | 268 | 290 | 23 | - | – | |
| Phobius | 268 | 290 | 23 | - | – | |
| Phobius | 291 | 327 | 37 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 328 | 349 | 22 | - | – | |
| PRINTS | 339 | 358 | 20 | 1.4E-81 | ||
| Phobius | 350 | 368 | 19 | - | – | |
| PRINTS | 367 | 384 | 18 | 1.4E-81 | ||
| Phobius | 369 | 387 | 19 | - | – | |
| TMHMM | 369 | 386 | 18 | - | – | |
| Phobius | 388 | 398 | 11 | - | – | |
| Phobius | 399 | 420 | 22 | - | – | |
| PRINTS | 401 | 420 | 20 | 1.4E-81 | ||
| TMHMM | 401 | 420 | 20 | - | – | |
| Phobius | 421 | 431 | 11 | - | – | |
| Phobius | 432 | 452 | 21 | - | – | |
| TMHMM | 432 | 454 | 23 | - | – | |
| Phobius | 453 | 463 | 11 | - | – | |
| Phobius | 464 | 486 | 23 | - | – | |
| TMHMM | 464 | 486 | 23 | - | – | |
| Phobius | 487 | 507 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0406100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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