Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0408500 |
| Transcript ID | LotjaGi2g1v0408500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formin-like protein; TAIR: AT5G67470.1 formin homolog 6; Swiss-Prot: sp|Q9FJX6|FH6_ARATH Formin-like protein 6; TrEMBL-Plants: tr|I1LH70|I1LH70_SOYBN Formin-like protein; Found in the gene: LotjaGi2g1v0408500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90567992..90573312) extracted from Lotus japonicus Gifu genome v1.2.
TACCAGTATATATTTGCCCTCATTTATTACACATTAAACTAAATTAAATTTTGTCCAAGCAACAAAATTGACTTGATCAT GACATAAATAAATTTAGAAAAAAATAAAAAAGTGAAAAATATAACTGCGGCTACTGCTGACGGAAGCTGTCGAGCATCCA GATCTTACAGCTCAAACAAGTTTCCTCTCTCTCTGTTTTCTTTTCTCTTTCTTTTTCAGGAATTTGCGGGAACAAAACGA AAACTCAGAGACATGAATTGCCTGAAACAAAACCAAAAGGGAAATCAACAAAATTCACCATGAAACCTCATTACTTGACC TTAAACATCATCATCATCTTCATCTCACTGTCACTGTCAATTGCAGTCAACACTGCAAAAGGGGATAAATCTAGCGCCAG AAGAATTCTGCACCAGCCTCTGTTTCCGGCGACCTCTGTTCCACCGCCAGCACCACCGACACCGCCGGAGACACCACCTT CTTCCGACGGCGACATTCCTTTCTTCCACGAGTACCCACCGGGGCCACCAACGGATCAGACCGTCCAGTCAGCACCTTCC ACTTCAACGCTGAATGGCACGACGGCGAACCCCACGGCGACGCAACCGGCCAAGGGGACAAAGAAGGTTGCCATTGTGAT CTCCGTTGGAATTGTGGTGCTTGGCATGCTCTCAGCGCTCGCCTTCTTCTTGTACAAGCACAGAGCGAAACACCCGACGG AGACGCAGAAGCTGGTTGGTGGTGGTGGTAATTCTCAGAGGAACGTCCATGAGGACTCGACGGCGGCGCAACCGTCGAGC TTCCTCTACATTGGTACAGTCGAGCCAATGCTAGCGTCGGCGACATCGAATGAGCAGAGAGAATCAAGCAAGCCGAACAG GTCGCCTTATCACAAGCTCAATCCGATGAAGCGATCCGATCGGTACCGTCCTAGTCCCGAGTTGCAGCCAATGCCGCCGC TCAGGAAGCCTCCCGACGGAAACCACCCACCGCCGGCGATGTCATCGTCGTCGTCTTCCGACGAGGAAACCCACGACACG GCGTATCATTCGCCGCAGAACTCGTCGCTCAGTCACGAGGACGGGTTATACACGCCGGCTTCTCGCCAGAGTTCTAAGGT AAACGGAAGCCCTGCTCCGCCGGCGGCGATGAGAGAGGCTAATTCCACGACGGCACTTCCCTTCTCCAAGAGAACCTCGC CTAAGTCCCGAATTTCAGCTTCTTCGCCGGATATTAGACACGCCATCATACCATCTATAAAGCAGGCTCCACCTCCGCCG TCTCCGCCGCCGCATGAACTACAATTGACCACCGTAGCAGCTTCCAGACGGCCAAGATTCTCAGCACCACCTCCACCTCC GAATTTGGCGCAGCTTCAGTCAACAACCAACACTACTACTTTACACCTGTCCAGGACATCACTCAATCCCCCTCCTCCTC CTCCACCGCCACCACCACCTCCTCCACCGCCGCATAAAACGTCCAGGACAAAAGGGTCTCCGGCGGTTGAAGTTTCACCT TCTTCTACATCTATAATGCAGCAATCTTGGTCACCAACTAGTCAAAGAGGTGCTTCTTCTGCTGGTAGTGTAACAAAATT TTCACAGCATGTTAACAGTGATCAAAGTGTTAACTCTTCCGAGAGGCTTGAAGCCAATGACACGGATGAAACAAAACCCA AGTTGAAACCTCTGCATTGGGATAAAGTTCGTGCTACCTCAGACCGTGCTACAGTGTGGGACCAGTTAAAATCAAGCTCG TTTCAGTAAGAATATTACTTATATACATGCAATTTTGGGCTACTAGTTCTAGTAGTACAATTTTGAACTGATATTCATTT ATGTGGTGTACCATTTTTTAAAATAGATTAAATGAGGACATGATGGAGTCCTTGTTTGGCTGCAAAGCTACAAATTCAGC CCCAAAACCAAAAGAAACAACTCCTAGAAAATCAGTTTTCCCATCTGTTGATCAGGAGAACAGAGTTTTGGACCCTAAGA AGTCCCAAAACATAGCTATACTACTGAGAGCACTGAATGTGACAAGAGATGAGGTGTCTGAAGCTCTTTTAGATGGTATG TTGTTTCCTTCATGTTCTCCCATTTCTGGATAGTGATTGTACTTTGTTTATACTTGCAATACAGATGAGCAATGTTGAAG TTACCCATTTTCTGATTCGGGTAAAATATACAAAATTGGTGATTCATGGTTCTGTTATGTGATGTTAGTGCAAGATCTAT ACAGTGTTCAATGCCGGGTTTGTGTGCACGGACCCGGTCAAAACATGCAGTGTGTTCTATTGTTTAGATTATCAAGATTT GCAAAATCACTAGTCAAATATGTTTAATTTGTCATCATACAGAAAAACTTGGAGTGAGGGCATAAACTTTACCCGTAGTA GTTTATGCCAATAATGTAAATAGAATGCATCATGTAAGAAACAGACAGCACAGCTCAAGAGCATAAAACAAAAAGTCACC ATCATTACATCTCAAATCAAGTATGAAAATGTACATTCAGCAGCATGGCATGTGCATGCATCATTGTGTTATTTTAAGGG AGGTGCAAAGTTAGGTATTCTGGAACTGTGAATTTCAAAATGTGGTAATTTGGTATAGAAGTCCTTTTTAAGTACAAAAC AATAACCGAACATCTACCATGGTGTGATCACACTGCTTTTTCCTCCACCCCCAGCTGAGAAAGATCTAAAATGCATTTTT GTCTTACTTTCTGAGGATTGATTGTCATTAAATTAGAAACTGCAATTGCCACCAAACTCAACCAGTTTATCACTGTAACA ATTCCTTAACAACCTAGCTTTACCTTTTTGGCTTTATTGCTTAAGCATACCTGTCATACTTCCTCTAAAAGCAAGAGTAA CCCTGTTTTATGAGAGCCATGATAACTAATAATATAGCCCATTATACAATGCTTGCCAGAGCTCTAATTCAAAAAATGGA CTATTCTATCTTCTCTATCACTGCACAACATTTCATTTTCATCATTATCTTTATCTTTATTTTTTTCTCATAGAAGTACT AATCTCTAATTCCTTTATGCTTGATATCATCTGGGGGATAAACCAATTAGTAGTAACTCTCTGTTCCAGCTTACCTACAG TCCACTCTGGTAGGGACCATTATTCCTAGAAAGACTTTAAAATGTAATAACGTCAAAATTTTAAATTACATTCATAATTA CAATCCATTCATTCATATTCTTAATTGTGGTACCACATTACTTTTGTGCCCCCCACCTCAAATGACACTAGTAATTGTAA GGCAGTAACATGTAGAAAAGTTTACTCCATAGGAGCTTTGCTATCATATTTTACTTTCAAGTTTAACATGAAACAAACTT TCAATGTCAACGTTATTGTTTGAAATTACTAAACACCTGTTCCAGCTTACATATCCTAGGCTCTTTCCTTGATAGATCTA ATTTCTTATCTGCAACTTTTGTTTTCACTTTGCAACCATCGTCACCGGTAGTGTTATTTTTTTGATGAACCAGGGAATCC TGAAGGTTTGGGTGCTGAGCTGTTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAGAAACT ACGATGGCGATCTCTCAAAACTTGGAACCGCTGAAAGATTTCTTAAAGCTGTGCTTGATATACCATTTGCATTTAAAAGA GTTGAAGCTATGCTATACAGAGCGAACTTCGATTCAGAAGTCAATTACCTTAGGAAGTCTTTTCAAACCCTGGAGGTCTG GAAAACTTTTTTCAGTCCCTTGTTATCTTTGATCTCATGTTTTCTGAGTAACTAACTAACCAATCAATTACTAATATCTT TCAGGCAGCAAGTGAAGAATTAAGGAACAGCCGGCTATTCTTCAAACTACTTGAAGCTGTTCTCAGGACAGGAAACAGAA TGAATGTTGGCACTAATAGAGGTGATGCTAAAGCTTTCAAACTGGAAACCCTATTAAAACTTGTAGATATAAAGGGAACA GATGGAAAGACCACATTACTTCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGTGCAGGAGATGAATCTGCAAATGG GAATGTTCAGTACCGAATGGAATCCAAATTCAATGAGGACGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCTGGGCTCA GTAGAGACCTTATTAGTGTCAAAAAATCAGCAGGAATGGACTCAGATGTCTTGAGAGGCTATCTTTCAAAGCTCGAAACG GGGCTTGAAAAAGTGAGACTGGTTTTGCAATATGAGAAGCCAGATAAGCAAGGCAATTTCTTTAACTCCACTAAGCTATT TCTGAAATATGCTGAGGATGAAATAGTGAGGCTTAAGGCTGATGAGAGAAAGGCCTTATTGCTTGTGAAAGAAGTTACAG AATACTTTCATGGGAATGTAGCAAAGGAAGAAGCCCACCCTTTCAGAATTTTTATGATTGTAAGAGACTTTCTAAATATT CTGGATCTAGTGTGCAAAGAAGTTGGAAGAATGCATGATAGAATTGTTGGCGGTTCTTCCAGATCCTTCCAAATAGCTTC CAGTGCCTCTTTACCGGTTCTGAACAGGTATAATGCAAGACAAGATGGGAGCTCGGATGAGGAAAGCTCATCCCCCTAGT ATTGTGAATACACGAAAGACGCGATAGTCTCTCCGAATAACAGTGAAAGTAAATTAATGTTTTTTGCAAATTTAAGTTGA AATTGCCTGCATTTCCAGGTTTAGAATCCCAACTTTAATAGGGAAGAAGGACATCCTTCACTAAGATCGAACATCAAACA CTATGCATGGAGGGGGAAAGAAAGTGCACACGCCATTGAAAGCATTTATATCATCCTCATTCAACTCCGTGCGAAGAATA AATGAATTTCTAAATGGGAGATGCAGGAGATGCATCATTTTGTTTCTTGGACACCATACATATGCTTACAGTCAAAATAG ATTTTATTAGCTCAGAGTTCTACACATTTTCGTATTCTAGAATGCTCTCATGTATTTTTTAAGACAAATATTGGTAATAA ATAGCAGTTTTGCAGCAATTGCTTTATCTGTTCTTATCATTTAAAAACACACTAGAATTCTAGTTCTATAATGTTGAAGC AGAACTTTGTGAAGTGGTGAAAGCAAAATGGGTTTCTCAAAGTCAAAAGAGAACATTACCAGGAAAAGTGGTGAAGGTGC CTTTTCCTTAAAAGCAGCAACGGTTCTTTTGTAGTGAGTTGGCTGCAACTCATCATTGTTTCCTCGTCAAATGTTCCATT AGAAAAAGAGTCGAAGCCAGCCACTGCATATTTGCCTTCTC
CDS sequence (LotjaGi2g1v0408500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTCATTACTTGACCTTAAACATCATCATCATCTTCATCTCACTGTCACTGTCAATTGCAGTCAACACTGCAAA AGGGGATAAATCTAGCGCCAGAAGAATTCTGCACCAGCCTCTGTTTCCGGCGACCTCTGTTCCACCGCCAGCACCACCGA CACCGCCGGAGACACCACCTTCTTCCGACGGCGACATTCCTTTCTTCCACGAGTACCCACCGGGGCCACCAACGGATCAG ACCGTCCAGTCAGCACCTTCCACTTCAACGCTGAATGGCACGACGGCGAACCCCACGGCGACGCAACCGGCCAAGGGGAC AAAGAAGGTTGCCATTGTGATCTCCGTTGGAATTGTGGTGCTTGGCATGCTCTCAGCGCTCGCCTTCTTCTTGTACAAGC ACAGAGCGAAACACCCGACGGAGACGCAGAAGCTGGTTGGTGGTGGTGGTAATTCTCAGAGGAACGTCCATGAGGACTCG ACGGCGGCGCAACCGTCGAGCTTCCTCTACATTGGTACAGTCGAGCCAATGCTAGCGTCGGCGACATCGAATGAGCAGAG AGAATCAAGCAAGCCGAACAGGTCGCCTTATCACAAGCTCAATCCGATGAAGCGATCCGATCGGTACCGTCCTAGTCCCG AGTTGCAGCCAATGCCGCCGCTCAGGAAGCCTCCCGACGGAAACCACCCACCGCCGGCGATGTCATCGTCGTCGTCTTCC GACGAGGAAACCCACGACACGGCGTATCATTCGCCGCAGAACTCGTCGCTCAGTCACGAGGACGGGTTATACACGCCGGC TTCTCGCCAGAGTTCTAAGGTAAACGGAAGCCCTGCTCCGCCGGCGGCGATGAGAGAGGCTAATTCCACGACGGCACTTC CCTTCTCCAAGAGAACCTCGCCTAAGTCCCGAATTTCAGCTTCTTCGCCGGATATTAGACACGCCATCATACCATCTATA AAGCAGGCTCCACCTCCGCCGTCTCCGCCGCCGCATGAACTACAATTGACCACCGTAGCAGCTTCCAGACGGCCAAGATT CTCAGCACCACCTCCACCTCCGAATTTGGCGCAGCTTCAGTCAACAACCAACACTACTACTTTACACCTGTCCAGGACAT CACTCAATCCCCCTCCTCCTCCTCCACCGCCACCACCACCTCCTCCACCGCCGCATAAAACGTCCAGGACAAAAGGGTCT CCGGCGGTTGAAGTTTCACCTTCTTCTACATCTATAATGCAGCAATCTTGGTCACCAACTAGTCAAAGAGGTGCTTCTTC TGCTGGTAGTGTAACAAAATTTTCACAGCATGTTAACAGTGATCAAAGTGTTAACTCTTCCGAGAGGCTTGAAGCCAATG ACACGGATGAAACAAAACCCAAGTTGAAACCTCTGCATTGGGATAAAGTTCGTGCTACCTCAGACCGTGCTACAGTGTGG GACCAGTTAAAATCAAGCTCGTTTCAATTAAATGAGGACATGATGGAGTCCTTGTTTGGCTGCAAAGCTACAAATTCAGC CCCAAAACCAAAAGAAACAACTCCTAGAAAATCAGTTTTCCCATCTGTTGATCAGGAGAACAGAGTTTTGGACCCTAAGA AGTCCCAAAACATAGCTATACTACTGAGAGCACTGAATGTGACAAGAGATGAGGTGTCTGAAGCTCTTTTAGATGGGAAT CCTGAAGGTTTGGGTGCTGAGCTGTTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAGAAA CTACGATGGCGATCTCTCAAAACTTGGAACCGCTGAAAGATTTCTTAAAGCTGTGCTTGATATACCATTTGCATTTAAAA GAGTTGAAGCTATGCTATACAGAGCGAACTTCGATTCAGAAGTCAATTACCTTAGGAAGTCTTTTCAAACCCTGGAGGCA GCAAGTGAAGAATTAAGGAACAGCCGGCTATTCTTCAAACTACTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGT TGGCACTAATAGAGGTGATGCTAAAGCTTTCAAACTGGAAACCCTATTAAAACTTGTAGATATAAAGGGAACAGATGGAA AGACCACATTACTTCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGTGCAGGAGATGAATCTGCAAATGGGAATGTT CAGTACCGAATGGAATCCAAATTCAATGAGGACGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCTGGGCTCAGTAGAGA CCTTATTAGTGTCAAAAAATCAGCAGGAATGGACTCAGATGTCTTGAGAGGCTATCTTTCAAAGCTCGAAACGGGGCTTG AAAAAGTGAGACTGGTTTTGCAATATGAGAAGCCAGATAAGCAAGGCAATTTCTTTAACTCCACTAAGCTATTTCTGAAA TATGCTGAGGATGAAATAGTGAGGCTTAAGGCTGATGAGAGAAAGGCCTTATTGCTTGTGAAAGAAGTTACAGAATACTT TCATGGGAATGTAGCAAAGGAAGAAGCCCACCCTTTCAGAATTTTTATGATTGTAAGAGACTTTCTAAATATTCTGGATC TAGTGTGCAAAGAAGTTGGAAGAATGCATGATAGAATTGTTGGCGGTTCTTCCAGATCCTTCCAAATAGCTTCCAGTGCC TCTTTACCGGTTCTGAACAGGTATAATGCAAGACAAGATGGGAGCTCGGATGAGGAAAGCTCATCCCCCTAG
Protein sequence (LotjaGi2g1v0408500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPHYLTLNIIIIFISLSLSIAVNTAKGDKSSARRILHQPLFPATSVPPPAPPTPPETPPSSDGDIPFFHEYPPGPPTDQ TVQSAPSTSTLNGTTANPTATQPAKGTKKVAIVISVGIVVLGMLSALAFFLYKHRAKHPTETQKLVGGGGNSQRNVHEDS TAAQPSSFLYIGTVEPMLASATSNEQRESSKPNRSPYHKLNPMKRSDRYRPSPELQPMPPLRKPPDGNHPPPAMSSSSSS DEETHDTAYHSPQNSSLSHEDGLYTPASRQSSKVNGSPAPPAAMREANSTTALPFSKRTSPKSRISASSPDIRHAIIPSI KQAPPPPSPPPHELQLTTVAASRRPRFSAPPPPPNLAQLQSTTNTTTLHLSRTSLNPPPPPPPPPPPPPPPHKTSRTKGS PAVEVSPSSTSIMQQSWSPTSQRGASSAGSVTKFSQHVNSDQSVNSSERLEANDTDETKPKLKPLHWDKVRATSDRATVW DQLKSSSFQLNEDMMESLFGCKATNSAPKPKETTPRKSVFPSVDQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGN PEGLGAELLETLVKMAPTKEEEIKLRNYDGDLSKLGTAERFLKAVLDIPFAFKRVEAMLYRANFDSEVNYLRKSFQTLEA ASEELRNSRLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGDESANGNV QYRMESKFNEDEFKKQGLQVVAGLSRDLISVKKSAGMDSDVLRGYLSKLETGLEKVRLVLQYEKPDKQGNFFNSTKLFLK YAEDEIVRLKADERKALLLVKEVTEYFHGNVAKEEAHPFRIFMIVRDFLNILDLVCKEVGRMHDRIVGGSSRSFQIASSA SLPVLNRYNARQDGSSDEESSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| PANTHER | 5 | 901 | 897 | 0.0 | – | |
| PANTHER | 5 | 901 | 897 | 0.0 | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 109 | 83 | - | – | |
| MobiDBLite | 41 | 106 | 66 | - | – | |
| MobiDBLite | 43 | 62 | 20 | - | – | |
| MobiDBLite | 77 | 104 | 28 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 110 | 132 | 23 | - | – | |
| Phobius | 133 | 903 | 771 | - | – | |
| MobiDBLite | 141 | 164 | 24 | - | – | |
| MobiDBLite | 145 | 164 | 20 | - | – | |
| MobiDBLite | 180 | 463 | 284 | - | – | |
| MobiDBLite | 213 | 231 | 19 | - | – | |
| MobiDBLite | 249 | 277 | 29 | - | – | |
| MobiDBLite | 289 | 307 | 19 | - | – | |
| MobiDBLite | 358 | 373 | 16 | - | – | |
| MobiDBLite | 374 | 395 | 22 | - | – | |
| SUPERFAMILY | 380 | 862 | 483 | 3.27E-102 | – | |
| MobiDBLite | 399 | 449 | 51 | - | – | |
| SMART | 452 | 867 | 416 | 2.9E-128 | ||
| ProSiteProfiles | 452 | 878 | 427 | 54.166 | ||
| Pfam | 454 | 852 | 399 | 1.3E-119 | ||
| Gene3D | 522 | 865 | 344 | 4.5E-86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0408500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…