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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0408700 |
| Transcript ID | LotjaGi2g1v0408700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G02650.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial; TrEMBL-Plants: tr|A0A072V0E2|A0A072V0E2_MEDTR PPR containing plant protein; Found in the gene: LotjaGi2g1v0408700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90582125..90587765) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTGTTAAAAATAATTTGAAGCTCTGCACGCAAAATCTTTGGGTTTCGCCGCCGTCATCACCTCACTCTCCGATCTG AAGCTCTGCACGCCACTGCTCCTCTTGGGTTTCCTCGCCGTCGCCGCTCTTCCTCTCTCCCACCGTTATTAAGCTTGTAA GAGTGAGAGTGGTGTTGTAGGGTACTGACAGGATGTGGAGGTGGATCCTTGCAAGACATGGAAATGCCATTCGCAGCTAC AACAACCGCGTTCTCTCACGAATTCAGCTCCCTCTTTCCAATTTTCTGGTGAACCCTCCGCCCCAATCAACTTTTCATTT CCCTCAAAGCTCATATGTTTGTAGCAATGGCAACAACCCCCGATTCTTCTGTCATGGAGCCACTGATTCCACCGTCGATT TCGAAAATGGGGTCTCCGTGTTTTCTGATGGTGGTGTTCAGAATGATGATGAGCAACGTGCTGTGGAAGAACAAGGATAT GAAGAAAAAGAAGAAGAAGTGTACCAGATTGATGAGGGCAAGTTGGAGAACGTGGTGAGTCTTCTTCAACGTGAAGACGC TGATGGGTCATTGGAGTCATCTCTTGATGCCATGGATTTGACCCTGCACCAAGACTTTGTCATCATAGCACTTAGAAGAA ACTCTTGGGGTCATGGTTTGGTTGAGAATCTTCTCAGGTTTTTTAGGTGGGTTTGGAAGGAGAATTCTTCAAATGTCACA ACCCCAGTTGTTGAGTCTCTTGTTCATGCAGTATGCAGCAGCAGTGTGAGGGAGAAAGAGTTCTACTCGCTGTGGGAATT GGTTAAAGAAATTGGGGAGGAAGAGGATGGAAAAATTATCGATGTAACCATTCTCAATAAATTGATATTTTACTTCTCCC AATTGGGAAATGGGAAAGCTGCTTTAGAGTTATTTGACAAGTTTGAGTTCTTTCAGTGTGTGCCTAATGCTGAAACATAT CATTTCACAATTCAAGCTCTTTATAGGCATTCGTTGTTCGATTCGGCTTCATCTGTAAGTCAAAAGATGCTGGATGCACA GAGCATTCCTGATGAGGAGAAAGTTGGTGACATATTAGGTTGGTTGTGTAAGGGCAAAAAGGTTAAAGAAGCACATGCAG TGTACAAGGCAGTGGTAGAGAAAGGGAAGTATCCACCTATGTCTTCTGTTAACTTTTTGGTTGGCAAACTCGCTTACGAA AATGGAACTGTACCACTGGCTTTGGAGATGTTGAAAGATATCCCTGGGGACATGAGGAAACATGCCATAAAGCCGTATTT GGCTGTTGTTCGAGCCTTGTGTAGGGTTAAAGATGTTGGTGCAGCTAAGCAGTTGATATTGGACATGATTGCAAATGGTC CACCTCCTGGAAATGCTGTGTTTAATTTTGTTATTACTGGTTATTCCAAAGTTGGGGAAATGGGACAAGCTGTGGAGATG ATGAAGCTACTAGAAAGTAGAGGTTTGAAGCCAGATGTGTACACATATGCTGTTATTGTTAGTGGTTATTCAAATGGTGG TGAGATGGAAGCTGCCAGGAAGATCTTAGAAGAAGCTAAAAAGAATCATTCTGTGTTAAGCCCTGTGATGTATCACTCGC TAGTTCGTGGATATTGCAAAATGGAACAATTTGATGAGGCTTTAAAGTTGTTGACTGAGATGAAGGATTCTGGTGTTCGC ATCAGTGTTGATGAATACGACAAGTTGATCCAGTCTCTCTGCTTGAAGGCTATGGATTGGGAAACGGCTGAAAAGCTGCA AGCGGAAATGAAAGAGAATGGTCTATATCTCAAGGGAGTCACAAGGGCCCTGATTAGAGCTGTGAAGGAGATGGAAAATG AGGCTGTGGAGCCTTAAATCATTTGTTCAGTTGCCTAAACATTGATGTGAGCAGCCTGGTATTTGCAACTTTTTTCTGAT TAGCTCGTCAATTTAACTGTAGTTTACAATCCCTATGCAAAAGCCTATCGAGAGGAGAAAATTTTGGAGTTGATTGTTAA CATGTTTGATGTCTTAAACTGGTCTTTTTTAAATAAGACTTCTTTATTTCCTCCGGTTTAATTTTGATACCGGTACACTC AAACTTATTTAACCTTTTTACTAGTTAATGTCAGATATAATGAGAGAGCCCATTTGTAGTGCTGCTTTTTTATTATGTGT TTCCTTCCAATTATATTGCTGCATGCAATAAAAAAACCTAGATCTTTGTAAAGGGCCGTTTCCCATTTTATCCTGTACTT AACATATTTTTATTATGGCTGGTATTGTATGTTTCATTTTCAGCTTCTTGCAGCAATATTTTGATCCCAAGGTTATACAT TATTCCTAACACCTTGTATTGTATAAATATTAGGCTGAAACCTTAAGAATGATATAGTGAATGAGAGAAGCTACATAATT GAATCCAGGGGAAGTATACTCCAACACAAAATTAAAGAGGAATACTTTCATTTTTTAGTTCTCCTTGGACTTCTAATCAA TTTATCTTATCTACTTGTGTATGTATCTGTGCGTATTGTATGTTTCAGTCACTATTGTCCTGAGGCAAGCCCAAAATGTC ACTCTGATAAAAAACTGATAATATTTTTTTAGAATCAAAACAAATCTTAATAAAATTTGAGTATGCAGATTTTCCTCATA AATTACAGAAGATTTAGGCAGCACAAGATTACTTATTTTTATCACAATCCTCGAAACAGTGACTGTCTAGCCTCTACCAA TAGGCAACTCTGACTCCAGAAATCAGAGAGTGTACAAACAATTTGTCCAAACCAACATAATGAGTATAAAAATGAGTAGT CCAACTAAAATATGAAGACAACACTGTCATGAACTCTGGACTTCTGATTCTGAGCCACACATTCTGAAATCCACATTAGG TTCCTGATCTCCTGTTTCCCTAACCTCATATACTCGAAGAACACAGCATACTGAAACTGTTGCTCAAACACCAAGCAAAG CCTCTTCGCCTCCTCCTCATAGAATGCCTTGTCAGGCATCTGACTCTCTCCATATGATAACTTGGCAAAAATAGACTGAT AGGGAGGGTATTTTTCCATAACAGCATAAACCTGATCAACGTCCTCACAGACAGCAAGTTCCTCATGACCATAGGGGTAA AGCAAACCAAAGTTAGGGTGGAAATGGAAGTTTCCTTCCTCTTTGACGCTATAGAACTAGGAAAAGATTTGAGGTAAAAC CCTCTGTGTGATCTGAACTTACAGTAAATAGAAAAATGGGCATCCCAAAGGTTCCTCTATTCATGTAACTTTACAGCTTT CTTCTCTTGGAAGGGAGAGCTGCACTGTTCAACATAGGTTTTGTTTATAAACTTCGGGGTGAAAACAGAGCTGCTGATAA TTATTGTGATCGAGTAGCTGTTAGTAGTTATGTCAACAACTGCCTTGTAACAGATTCAGTTAGTTAGTTATTACTGCCAG CACTCAGTGCTATTTCTGTCGTGTCTTACTAACTTCAGTTAGACTCTTAGACTCACCTCTCTCTATGTATAAGTGTCAGT CCTTGTACCTTGTCTTGTAAGCATTGAACATCACTTTCATTTAATCTCAAAATTATTCTTACTGTTTTCTTACAGTTATA AATAAGATACAAAAGTAACATAGTAGAAACATTGTTGATGTTTTTGTTAGATTGTCAATCCTGGCGAGATCCTGGGATCC CAGTTCCCCTCCCATCCCGGCCAAGTACTGGGACGACCACCCCCATCCCAACCCACTTCGCCGGACACTGGGATCAAGGC CAAAATTTTGGCCTTTCCCTTGCAATCCGGCGGGATAGTGAAGGTTCCAGTTTTCCGAACGTTGGGGATGGTTTTTAGGG GTATTTCTGGGTTTCACAGCGGAAAAAACCCTAGATGTTTGATTGAGCTCGACCCTCGTCTCCTCAGTCCTCACATCCCT CTCTTTGACCCCTCTCCTTGCCACTCTCTCAAGCGTGTGAACCGGCCAGCAACCACTACGACAGGACCTCTGTCTTTTTG CATCTCCTCTGTTCTGTTTTCTTTCTTCCTTGCTTTGTTCCTTCATCCTCTGTTCTCTTCCAGACATGGCTTCCTCCTCT GACTTTTATTTAGTTAAGTTTCATGTATCTTCTTGTTTTTTAGTTGTATGACTTTTGTTGAAGACTTTTAATTCTTTTGC TGGTTTGCTACTATGAAAGTATGCATATGTTATGAACTTCAAGTAATATTTATCATTGATTTAGTATGTATATAAATTAT ACATAATATAGACAAGAACTCACTATCCCGGCCATCCCGCTATCCCATTTTTGGGGCCGGCCTCTACGTGTTGGGATCTA GTATTGACAATATAGGTTTGTTAGTTTCATAGAGCTGGGGTCAGCTGCTTAAGTCTTGTCCCCCGTATCTAGGGATGGTG GCCTTGAGAGAGTGTGGTGGAGACTGGAGAATGAAAATGGGGATGTTGTGGTGTTTTGAAGAAGGAAACCAAATATCGGA TCGAGTCATTGGGAATCCAATGCGGCGGAGAATCAGAAGTCTTGTCCCCCATACTTTTTTAAGATGTACTTTATACTTAT GAAGGCAGATAATAAAAATATTATCTTGTCCAAATAGACTCCTAGTACTGGTTCATTGATGAGATCTAGGCACCATGATG CACAGACCTAAAATAGATCATCAGTTATTATGAGAGTGAACAAGAGTTGAGGACTAGAGATTCCAAGAGTTTGGTGCTCA AATAAAGGAAGTTGTCAAATATGAACAGAACTATAGAAGTACAGTGGTCAGGTAGGTAGGAACTAGGAACGAAGGAGCTT TATTTAACGTTATGCTTGCGTGATTTTGTTAAACCTTGAATGTTTTCATTTTGTTGGTGCTACTAAGAGGGCTTTACAGT AAAGTTTACTATGCAAAGGCATACTTAAACATGACTTTGGCCAGCTTAAGTGACTTAGTGAAACCTTGAATATTTGATGC TATTAAAATGGCTTACTAGTTTGGGGTGGTGCTGGTGTAGTGCGGCTGTTGTGAATGCAGAATGACAGGTGGCTGTGGTG GAGTTGGGGTATTAGTGGTATCCAAGGTTTTCCATTGTGAGGATCCGTTCAGGTATGTTACATGAATGTTTTAGGCTGTT AGGAACTATAATACATGTTGGTTGAAACTAAGGCAGATCTCAATCTATGTGATGACAAGATTGAGATGGAGGCCTTTGGT GGTGCAACTGTCTAGTGTAATTGCTTAGCACTCATGCCTTCTGTTCTGTCTATATTCTATGTTATACAATAACAATACTA AATTTCTATTATTGAGCATTATGTATGTGATTTAGAGTATGAAATTGATCTCTTTTCTTTTCCAACACTATATGGAATTT GCCTTGGACCCAGAGGAGAATCGGGACTGCTGCAGAAACAGGGAATTAAGTGATGAGACCAGTAAAGTTTGCATTGCATG ACTGAGGCAATATATGAAGTGATGAGACCACTTGCTTTTGTTTTTTTGCTTTTCCTTTTTATGTGTTGTTTATTGATGAT GGACCATATGTAGCAGAGGTCATGCTTAACATTCACCATTACCTTTCTGCATTCATGGTTCAAGGAAGTGAACAAAACTC ATTGAAAAAGTACATTGCACTTATGGAAAAATAAATCAATT
CDS sequence (LotjaGi2g1v0408700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGGTGGATCCTTGCAAGACATGGAAATGCCATTCGCAGCTACAACAACCGCGTTCTCTCACGAATTCAGCTCCC TCTTTCCAATTTTCTGGTGAACCCTCCGCCCCAATCAACTTTTCATTTCCCTCAAAGCTCATATGTTTGTAGCAATGGCA ACAACCCCCGATTCTTCTGTCATGGAGCCACTGATTCCACCGTCGATTTCGAAAATGGGGTCTCCGTGTTTTCTGATGGT GGTGTTCAGAATGATGATGAGCAACGTGCTGTGGAAGAACAAGGATATGAAGAAAAAGAAGAAGAAGTGTACCAGATTGA TGAGGGCAAGTTGGAGAACGTGGTGAGTCTTCTTCAACGTGAAGACGCTGATGGGTCATTGGAGTCATCTCTTGATGCCA TGGATTTGACCCTGCACCAAGACTTTGTCATCATAGCACTTAGAAGAAACTCTTGGGGTCATGGTTTGGTTGAGAATCTT CTCAGGTTTTTTAGGTGGGTTTGGAAGGAGAATTCTTCAAATGTCACAACCCCAGTTGTTGAGTCTCTTGTTCATGCAGT ATGCAGCAGCAGTGTGAGGGAGAAAGAGTTCTACTCGCTGTGGGAATTGGTTAAAGAAATTGGGGAGGAAGAGGATGGAA AAATTATCGATGTAACCATTCTCAATAAATTGATATTTTACTTCTCCCAATTGGGAAATGGGAAAGCTGCTTTAGAGTTA TTTGACAAGTTTGAGTTCTTTCAGTGTGTGCCTAATGCTGAAACATATCATTTCACAATTCAAGCTCTTTATAGGCATTC GTTGTTCGATTCGGCTTCATCTGTAAGTCAAAAGATGCTGGATGCACAGAGCATTCCTGATGAGGAGAAAGTTGGTGACA TATTAGGTTGGTTGTGTAAGGGCAAAAAGGTTAAAGAAGCACATGCAGTGTACAAGGCAGTGGTAGAGAAAGGGAAGTAT CCACCTATGTCTTCTGTTAACTTTTTGGTTGGCAAACTCGCTTACGAAAATGGAACTGTACCACTGGCTTTGGAGATGTT GAAAGATATCCCTGGGGACATGAGGAAACATGCCATAAAGCCGTATTTGGCTGTTGTTCGAGCCTTGTGTAGGGTTAAAG ATGTTGGTGCAGCTAAGCAGTTGATATTGGACATGATTGCAAATGGTCCACCTCCTGGAAATGCTGTGTTTAATTTTGTT ATTACTGGTTATTCCAAAGTTGGGGAAATGGGACAAGCTGTGGAGATGATGAAGCTACTAGAAAGTAGAGGTTTGAAGCC AGATGTGTACACATATGCTGTTATTGTTAGTGGTTATTCAAATGGTGGTGAGATGGAAGCTGCCAGGAAGATCTTAGAAG AAGCTAAAAAGAATCATTCTGTGTTAAGCCCTGTGATGTATCACTCGCTAGTTCGTGGATATTGCAAAATGGAACAATTT GATGAGGCTTTAAAGTTGTTGACTGAGATGAAGGATTCTGGTGTTCGCATCAGTGTTGATGAATACGACAAGTTGATCCA GTCTCTCTGCTTGAAGGCTATGGATTGGGAAACGGCTGAAAAGCTGCAAGCGGAAATGAAAGAGAATGGTCTATATCTCA AGGGAGTCACAAGGGCCCTGATTAGAGCTGTGAAGGAGATGGAAAATGAGGCTGTGGAGCCTTAA
Protein sequence (LotjaGi2g1v0408700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRWILARHGNAIRSYNNRVLSRIQLPLSNFLVNPPPQSTFHFPQSSYVCSNGNNPRFFCHGATDSTVDFENGVSVFSDG GVQNDDEQRAVEEQGYEEKEEEVYQIDEGKLENVVSLLQREDADGSLESSLDAMDLTLHQDFVIIALRRNSWGHGLVENL LRFFRWVWKENSSNVTTPVVESLVHAVCSSSVREKEFYSLWELVKEIGEEEDGKIIDVTILNKLIFYFSQLGNGKAALEL FDKFEFFQCVPNAETYHFTIQALYRHSLFDSASSVSQKMLDAQSIPDEEKVGDILGWLCKGKKVKEAHAVYKAVVEKGKY PPMSSVNFLVGKLAYENGTVPLALEMLKDIPGDMRKHAIKPYLAVVRALCRVKDVGAAKQLILDMIANGPPPGNAVFNFV ITGYSKVGEMGQAVEMMKLLESRGLKPDVYTYAVIVSGYSNGGEMEAARKILEEAKKNHSVLSPVMYHSLVRGYCKMEQF DEALKLLTEMKDSGVRISVDEYDKLIQSLCLKAMDWETAEKLQAEMKENGLYLKGVTRALIRAVKEMENEAVEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 153 | 336 | 184 | 2.7E-17 | ||
| PANTHER | 190 | 319 | 130 | 2.9E-48 | – | |
| ProSiteProfiles | 217 | 251 | 35 | 7.717 | ||
| ProSiteProfiles | 252 | 286 | 35 | 7.399 | ||
| ProSiteProfiles | 287 | 321 | 35 | 7.256 | ||
| SUPERFAMILY | 301 | 492 | 192 | 2.54E-5 | – | |
| Gene3D | 337 | 553 | 217 | 3.2E-37 | ||
| PANTHER | 343 | 531 | 189 | 2.9E-48 | – | |
| ProSiteProfiles | 358 | 392 | 35 | 8.298 | ||
| ProSiteProfiles | 393 | 427 | 35 | 9.657 | ||
| Pfam | 394 | 440 | 47 | 1.2E-9 | ||
| TIGRFAM | 396 | 429 | 34 | 3.2E-5 | ||
| ProSiteProfiles | 428 | 462 | 35 | 9.504 | ||
| TIGRFAM | 430 | 460 | 31 | 0.0012 | ||
| ProSiteProfiles | 463 | 497 | 35 | 12.496 | ||
| Pfam | 465 | 495 | 31 | 7.0E-8 | ||
| TIGRFAM | 465 | 498 | 34 | 4.5E-8 | ||
| ProSiteProfiles | 498 | 533 | 36 | 8.758 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0408700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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