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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410200 |
| Transcript ID | LotjaGi2g1v0410200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative; TAIR: AT3G49870.1 ADP-ribosylation factor-like A1C; Swiss-Prot: sp|Q8VY57|ARL8A_ARATH ADP-ribosylation factor-like protein 8a; TrEMBL-Plants: tr|I3S107|I3S107_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0410200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90704443..90708109) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATTAGTAAAATTTGATTTGTTATTTATTTAATTTAATTTGATATGTGATATGATATGAATGATTGGTGTGAATA GTGGGAAGAAGGGAGGGAAGAAAGAAAGGTGCGTGAAGGAGACCTAGCTAGATCTTTCTCTTTCTCTCTGATTTCTTTCG TGATCAAGAAGCAGCAGCAGCAATGGGATTATGGGAAGCTTTTCTCAATTGGCTTCGCAGGTACGCTTTTCTCGCTTTCA CTTTCCTTATCTTCAATTGATTTCTGTATTTCTCTCATTCATAGCCCTTTTTTGATTTCTAGAGAAACAGGTTCTGGTAA TTCTATGCTATTATTATTATTATTACTACTTTGATTTTCCGTCTTCGATTTGAGTACTGTAGATGGTTTGGAAATTGAAA TGTCTATTCTGTATGGAATTTCAATTTTCTGCCGGATAGGGGATTTTTTTTTTTAATTCTACAGTTTTCGTGCATTTATT CGTAATGATTTGTTTTTTTGAAGGTTTTATCTATTTGTGAGTCGCGATTTGTGGTTAATTCTCGCACCTTCGATAGGATT CCTACTTAGTTTGATTTCTAAAGTTTTTATATTCCAAATTTTGGATTAGTGATAGGAGCTGCTTTGTTAGAATTAAAGTG GTGGTAATTGAGAGAGGAAGAAATCACCTAATGAGAATCTTTTCGTTCTCACTCGCGCAAATTGGCATTAGTCTTTTATG AATGGCTTTTGATTGTGCTGAACCTGCTTCCTCTATTTTAACAAAGGAAATCAGTTTTAAGTATCATGAGGAAGTTGAAT TTTATAGATATGGTTTATGTGTGATTATGTTCTGAGCTAACTAGCTATGTGGGCTATTTTCTTCAAAACATGAGCTTACT GTGTTTTTTGAATTTGGTTGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCGCTCATAGGACTTCAGAATGCTGGAAA GACTTCCCTTGTAAATGTTGTTGCTGTAAGTACAATAATCATGTATTGTTGTTGACTTTCTCTTTAGCAAATTATTGTTG AGGGATGGTATTTATTACAAACTCACAAGAATAACATGTGTCGCAAGCGGAGAAAAAGTCGGAACTTAATAACAAAAACC GATTTGATTTGGAGAATTATCAGGATGTTTCGTAATCTAACATTTTTAGTTACAATAATCATTTCCCATTATTGTTTAAC TTATACTTTGGGGCTAATCCACTAACGGTTTTCTTTTAACCTGTTGTTTCTAGACTGGTGGATATAGCGAGGATATGATT CCCACTGTAAGTTCTGTTAAACAAATACTTTTATCACCTTTTTCTGTATTCAATTTTGGGAAGTTTTCTATCCATCAAGG GCAATAATATTCAGATCAATTTTTTGTTATCTGCTTCCAGGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTA CAATTAAGTTATGGGATCTTGGAGGGCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCGGTTTCTGCTATT GTGTATGGAACAAACTTCTTACTTTCTTCTGACTATAAATGTTCTTCTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGCAATCTGCATATGTTCTTATAG GAGCTGCTCATTTGTACATGCATAGACTGATACTGATAGAGCTTGAACTCATATATGTATATGTTCTTGCTGGTCTAAGT ACATAGTTGTTTCATTACCACTGGGTTATACCCTGTTTAATTTTAACTACTACTAGCCCAAACAAAGTTCTTCTTGATCA ATGGCAGTGATCAGAACAGCTTGGCTTATAGATGCCTGAGTAAAGAGCTCTTTCCTGGTGTATTTGTATATTACAAAAAT TCCTCCTTATCACTTGAAAAAGTGTAGAGATATTTGAATTTTCCTGTACAAGTTGATTACACAGGAAAATGAGTCATAAC ATTGAGTATAATGATTAAAACAGTTCAAATGATAAGGAAGTCAGTATATTATAGCTTCTCAAAAGTCAAAACTATGCACA TCCATGATTATCCTTCAATGTTTTGTGGTTTAAGGGGTAAAAAATTGAAACAATCACTCTATGATTTAGGGCTGCCTCCT TCTGAAAATTCTTGGTTGGTTAGATTTCAAAGCAGATTTCACTTTTTCTGGGTAGAATTGTGATGCTGTCGAGTATTCTC TGCCTCTTAGATCTAGTGCACATGTTAGTTGAACCACATACTTATATTTCTCATTGATGCCTTATCTCCTTTGAGTCCTT TCACATTTGCACCGTAAGTTAGTAATCATTAGTTTAATACATGAATTCATAAAACTTAGCAAGCTCTCATAATCTGATCT TTCCTGCAGATATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCA AACCATCATTGAGTGGTATCCCTTTGTTGGTGTTGGGGAACAAGATTGACAAACCAGGGGCTCTCTCCAAACAAGCATTG ACCGATCAAATGTAAGATAAATGTCACTTTTATTAATCTAACCCTAGAAAGTTCCAGAATGAAATTATTTCAGTGTAACA GTTTCTTAATTTTTTTATATCTTTTACCTTCATATTACCTTAGTGCTGAAAAGTGCTCTCTCTTGTGCAGGGATCTGAAG TCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATTGACTCCGTTATTGATTGGCT TGTGAAGCATTCCAAATCAAAGAGCTGAGAACCTAGTTTCTGCATTGAACTCTTGTGTAATATCTTCTCAGTGACGCATT TGTGGATTTACTACAGGCTTTAGCGTGTCTAACTTGGTCGATTGATTTATTCTTCCCCCTCCCTATATGTTTGGTAATGT TCTTATTTTTGAATGATAGGGAATTAAACGGGATGCCATACATGTCAAGGTTACTTTATGAGTAAATTATTGTGTATTAT CGGTTTAGCTATATGATTGAGTTTTCACAGCATTTGCAAGAGGACATGATTGTTTTGGCATTGTAAAATAGATCAGATAT TGTTTCTTTGGAATGATCAGCAGCGTGCCTTCAGTAAATTCCATCTGCCAAACATGCATTATTGCAGCTGACTTCTTTCC GCTGCCATTGAGCCTATTTGGGGCCCAAAATACTCGTTGGAGCTTATTTACTGCATTTCTTAGTGATATACACTCCAATA TTTGATCCTAGTTCTTATCCAAGTGGGATCATTGTGTCATTTTCTTATTTCCAGATGGTAAATGCGTTAGATCAAAATGT CGAAGAGCATCTTTTTAGGAGGCATTTCACAAAAAAAAAAAAAGATGCGGAATCATCACAACCATTGTTTTCTTAACCCT TAGGAGGTTTTTTATTTTTTATTTTTAGAATAATATTCTTAGGAATTGTGTTTTACATGAATCTCATTACTAGAAAGTAA AATGAAAAATATATTTTGTGTGTGTATATATATATATATTTTTTTTTTTCTCAAGAATGTTTTTAAAAATTATTTAGTTA AAAGAATATATAAATATGAAAAATTATGCAGTGGAAGGAAGGGTTACTGAGAGAATCTGAGAAAGTT
CDS sequence (LotjaGi2g1v0410200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTATGGGAAGCTTTTCTCAATTGGCTTCGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCGCTCATAGGACT TCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACTGGTGGATATAGCGAGGATATGATTCCCACTGTGGGAT TCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATTAAGTTATGGGATCTTGGAGGGCAACCTAGGTTCCGCAGCATG TGGGAACGTTACTGTCGTGCGGTTTCTGCTATTGTATATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAG AAGTGAACTTCATGATTTGCTGAGCAAACCATCATTGAGTGGTATCCCTTTGTTGGTGTTGGGGAACAAGATTGACAAAC CAGGGGCTCTCTCCAAACAAGCATTGACCGATCAAATGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATG ATCTCATGCAAAAACTCGACCAACATTGACTCCGTTATTGATTGGCTTGTGAAGCATTCCAAATCAAAGAGCTGA
Protein sequence (LotjaGi2g1v0410200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKPGALSKQALTDQMDLKSITDREVCCFM ISCKNSTNIDSVIDWLVKHSKSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 181 | 181 | 1.4E-54 | – | |
| PANTHER | 1 | 184 | 184 | 1.3E-125 | – | |
| PANTHER | 1 | 184 | 184 | 1.3E-125 | – | |
| SMART | 1 | 184 | 184 | 5.8E-27 | – | |
| SMART | 4 | 180 | 177 | 7.6E-20 | – | |
| Pfam | 9 | 178 | 170 | 7.3E-46 | ||
| ProSiteProfiles | 13 | 180 | 168 | 18.696 | – | |
| TIGRFAM | 18 | 176 | 159 | 1.9E-20 | ||
| SUPERFAMILY | 18 | 181 | 164 | 1.69E-44 | ||
| SMART | 20 | 183 | 164 | 1.1E-7 | – | |
| PRINTS | 21 | 44 | 24 | 9.2E-17 | ||
| CDD | 21 | 179 | 159 | 1.12884E-109 | – | |
| PRINTS | 77 | 102 | 26 | 9.2E-17 | ||
| PRINTS | 122 | 143 | 22 | 9.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0410200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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