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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410200 |
| Transcript ID | LotjaGi2g1v0410200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative; TAIR: AT3G49870.1 ADP-ribosylation factor-like A1C; Swiss-Prot: sp|Q8VY57|ARL8A_ARATH ADP-ribosylation factor-like protein 8a; TrEMBL-Plants: tr|I3S107|I3S107_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0410200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90705312..90707270) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTTACTGTGTTTTTTGAATTTGGTTGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCGCTCATAGGACTTCAG AATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTGTAAGTACAATAATCATGTATTGTTGTTGACTTTCTCTTTAGCA AATTATTGTTGAGGGATGGTATTTATTACAAACTCACAAGAATAACATGTGTCGCAAGCGGAGAAAAAGTCGGAACTTAA TAACAAAAACCGATTTGATTTGGAGAATTATCAGGATGTTTCGTAATCTAACATTTTTAGTTACAATAATCATTTCCCAT TATTGTTTAACTTATACTTTGGGGCTAATCCACTAACGGTTTTCTTTTAACCTGTTGTTTCTAGACTGGTGGATATAGCG AGGATATGATTCCCACTGTAAGTTCTGTTAAACAAATACTTTTATCACCTTTTTCTGTATTCAATTTTGGGAAGTTTTCT ATCCATCAAGGGCAATAATATTCAGATCAATTTTTTGTTATCTGCTTCCAGGTGGGATTCAATATGAGGAAAGTAACAAA AGGCAATGTTACAATTAAGTTATGGGATCTTGGAGGGCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCGG TTTCTGCTATTGTGTATGGAACAAACTTCTTACTTTCTTCTGACTATAAATGTTCTTCTTTTTCCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGCAATCTGCATA TGTTCTTATAGGAGCTGCTCATTTGTACATGCATAGACTGATACTGATAGAGCTTGAACTCATATATGTATATGTTCTTG CTGGTCTAAGTACATAGTTGTTTCATTACCACTGGGTTATACCCTGTTTAATTTTAACTACTACTAGCCCAAACAAAGTT CTTCTTGATCAATGGCAGTGATCAGAACAGCTTGGCTTATAGATGCCTGAGTAAAGAGCTCTTTCCTGGTGTATTTGTAT ATTACAAAAATTCCTCCTTATCACTTGAAAAAGTGTAGAGATATTTGAATTTTCCTGTACAAGTTGATTACACAGGAAAA TGAGTCATAACATTGAGTATAATGATTAAAACAGTTCAAATGATAAGGAAGTCAGTATATTATAGCTTCTCAAAAGTCAA AACTATGCACATCCATGATTATCCTTCAATGTTTTGTGGTTTAAGGGGTAAAAAATTGAAACAATCACTCTATGATTTAG GGCTGCCTCCTTCTGAAAATTCTTGGTTGGTTAGATTTCAAAGCAGATTTCACTTTTTCTGGGTAGAATTGTGATGCTGT CGAGTATTCTCTGCCTCTTAGATCTAGTGCACATGTTAGTTGAACCACATACTTATATTTCTCATTGATGCCTTATCTCC TTTGAGTCCTTTCACATTTGCACCGTAAGTTAGTAATCATTAGTTTAATACATGAATTCATAAAACTTAGCAAGCTCTCA TAATCTGATCTTTCCTGCAGATATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGA TTTGCTGAGCAAACCATCATTGAGTGGTATCCCTTTGTTGGTGTTGGGGAACAAGATTGACAAACCAGGGGCTCTCTCCA AACAAGCATTGACCGATCAAATGTAAGATAAATGTCACTTTTATTAATCTAACCCTAGAAAGTTCCAGAATGAAATTATT TCAGTGTAACAGTTTCTTAATTTTTTTATATCTTTTACCTTCATATTACCTTAGTGCTGAAAAGTGCTCTCTCTTGTGCA GGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATTGACTCCGTT ATTGATTGGCTTGTGAAGCATTCCAAATCAAAGAGCTGA
CDS sequence (LotjaGi2g1v0410200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTATCGCTCATAGGACTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACTGGTGGATATAGCGA GGATATGATTCCCACTGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATTAAGTTATGGGATCTTGGAG GGCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCGGTTTCTGCTATTGTATATGTTGTTGATGCTGCTGAT CCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAACCATCATTGAGTGGTATCCCTTTGTTGGT GTTGGGGAACAAGATTGACAAACCAGGGGCTCTCTCCAAACAAGCATTGACCGATCAAATGGATCTGAAGTCAATTACTG ACAGAGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATTGACTCCGTTATTGATTGGCTTGTGAAGCAT TCCAAATCAAAGAGCTGA
Protein sequence (LotjaGi2g1v0410200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD PDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKPGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKH SKSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 165 | 165 | 2.9E-110 | – | |
| PANTHER | 1 | 165 | 165 | 2.9E-110 | – | |
| SMART | 1 | 165 | 165 | 2.5E-17 | – | |
| SMART | 1 | 161 | 161 | 8.9E-13 | – | |
| ProSiteProfiles | 1 | 161 | 161 | 17.965 | – | |
| Gene3D | 1 | 165 | 165 | 6.3E-53 | – | |
| SMART | 1 | 164 | 164 | 1.1E-7 | – | |
| CDD | 2 | 160 | 159 | 5.65317E-110 | – | |
| PRINTS | 2 | 25 | 24 | 7.3E-17 | ||
| SUPERFAMILY | 3 | 162 | 160 | 5.48E-44 | ||
| TIGRFAM | 3 | 157 | 155 | 5.1E-20 | ||
| Pfam | 4 | 159 | 156 | 7.7E-44 | ||
| PRINTS | 58 | 83 | 26 | 7.3E-17 | ||
| PRINTS | 103 | 124 | 22 | 7.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0410200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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