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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410200 |
| Transcript ID | LotjaGi2g1v0410200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative; TAIR: AT3G49870.1 ADP-ribosylation factor-like A1C; Swiss-Prot: sp|Q8VY57|ARL8A_ARATH ADP-ribosylation factor-like protein 8a; TrEMBL-Plants: tr|I3S107|I3S107_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0410200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90705638..90707270) extracted from Lotus japonicus Gifu genome v1.2.
TTAACTTATACTTTGGGGCTAATCCACTAACGGTTTTCTTTTAACCTGTTGTTTCTAGACTGGTGGATATAGCGAGGATA TGATTCCCACTGTAAGTTCTGTTAAACAAATACTTTTATCACCTTTTTCTGTATTCAATTTTGGGAAGTTTTCTATCCAT CAAGGGCAATAATATTCAGATCAATTTTTTGTTATCTGCTTCCAGGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAA TGTTACAATTAAGTTATGGGATCTTGGAGGGCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCGGTTTCTG CTATTGTGTATGGAACAAACTTCTTACTTTCTTCTGACTATAAATGTTCTTCTTTTTCCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGCAATCTGCATATGTTCT TATAGGAGCTGCTCATTTGTACATGCATAGACTGATACTGATAGAGCTTGAACTCATATATGTATATGTTCTTGCTGGTC TAAGTACATAGTTGTTTCATTACCACTGGGTTATACCCTGTTTAATTTTAACTACTACTAGCCCAAACAAAGTTCTTCTT GATCAATGGCAGTGATCAGAACAGCTTGGCTTATAGATGCCTGAGTAAAGAGCTCTTTCCTGGTGTATTTGTATATTACA AAAATTCCTCCTTATCACTTGAAAAAGTGTAGAGATATTTGAATTTTCCTGTACAAGTTGATTACACAGGAAAATGAGTC ATAACATTGAGTATAATGATTAAAACAGTTCAAATGATAAGGAAGTCAGTATATTATAGCTTCTCAAAAGTCAAAACTAT GCACATCCATGATTATCCTTCAATGTTTTGTGGTTTAAGGGGTAAAAAATTGAAACAATCACTCTATGATTTAGGGCTGC CTCCTTCTGAAAATTCTTGGTTGGTTAGATTTCAAAGCAGATTTCACTTTTTCTGGGTAGAATTGTGATGCTGTCGAGTA TTCTCTGCCTCTTAGATCTAGTGCACATGTTAGTTGAACCACATACTTATATTTCTCATTGATGCCTTATCTCCTTTGAG TCCTTTCACATTTGCACCGTAAGTTAGTAATCATTAGTTTAATACATGAATTCATAAAACTTAGCAAGCTCTCATAATCT GATCTTTCCTGCAGATATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCT GAGCAAACCATCATTGAGTGGTATCCCTTTGTTGGTGTTGGGGAACAAGATTGACAAACCAGGGGCTCTCTCCAAACAAG CATTGACCGATCAAATGTAAGATAAATGTCACTTTTATTAATCTAACCCTAGAAAGTTCCAGAATGAAATTATTTCAGTG TAACAGTTTCTTAATTTTTTTATATCTTTTACCTTCATATTACCTTAGTGCTGAAAAGTGCTCTCTCTTGTGCAGGGATC TGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATTGACTCCGTTATTGAT TGGCTTGTGAAGCATTCCAAATCAAAGAGCTGA
CDS sequence (LotjaGi2g1v0410200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCCACTGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATTAAGTTATGGGATCTTGGAGGGCA ACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCGGTTTCTGCTATTGTATATGTTGTTGATGCTGCTGATCCAG ATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAACCATCATTGAGTGGTATCCCTTTGTTGGTGTTG GGGAACAAGATTGACAAACCAGGGGCTCTCTCCAAACAAGCATTGACCGATCAAATGGATCTGAAGTCAATTACTGACAG AGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATTGACTCCGTTATTGATTGGCTTGTGAAGCATTCCA AATCAAAGAGCTGA
Protein sequence (LotjaGi2g1v0410200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVL GNKIDKPGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 137 | 137 | 1.4E-5 | – | |
| PANTHER | 1 | 137 | 137 | 8.2E-91 | – | |
| CDD | 1 | 132 | 132 | 8.30083E-93 | – | |
| ProSiteProfiles | 1 | 133 | 133 | 14.836 | – | |
| Gene3D | 1 | 137 | 137 | 1.4E-43 | – | |
| SMART | 1 | 133 | 133 | 0.0013 | – | |
| PANTHER | 1 | 137 | 137 | 8.2E-91 | – | |
| Pfam | 1 | 131 | 131 | 8.0E-38 | ||
| SMART | 2 | 136 | 135 | 8.3E-4 | – | |
| SUPERFAMILY | 2 | 134 | 133 | 3.58E-35 | ||
| PRINTS | 3 | 27 | 25 | 3.2E-16 | ||
| TIGRFAM | 6 | 129 | 124 | 8.0E-15 | ||
| PRINTS | 30 | 55 | 26 | 3.2E-16 | ||
| PRINTS | 75 | 96 | 22 | 3.2E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0410200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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