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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0411500 |
| Transcript ID | LotjaGi2g1v0411500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G49810.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30; TrEMBL-Plants: tr|G7K2F8|G7K2F8_MEDTR E3 ubiquitin ligase PUB14; Found in the gene: LotjaGi2g1v0411500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90812867..90814466) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTTGTTTGTCAGGTTCTCTCTATCTATCTCTGCTCCTCCAAATAGTTCTAGTCCTACCCACTGTTCATTAACCTCA TGATGTGAGATATGATGGTTATTGCATTTCAGATAAAGCCAATTTGTACTAAACCAAAACCAACCTTCTCTTCTGTTTCC GCCTTCTCAATTTCCCCTCACATAAAAAAGAGTCACTGATTTTTCAAGCCAGAGTTTGGGGTTTTGCATTTTCCGGTTAG GTTTTCCAAAATGCCGATGTTTCAGCCTTCTAAAAGGGACATGGTGGCGGGATTTGACGGTAGCGGCGACGGCCAGATTC TAGATCTGGACACCGCCGTCAAAGACGGTGTCCTAGGTGGGGTTGACGGCGGAGTTTTGGGAGGTGGGGTTTGTGAGAAG TTGGATCTGGCGAACATGATTCAAGAGATGGAGCTATGTGAGGTTCCGAGTGTGTTCATTTGTCCAATCTCGCTTGAGCC AATGCAAGACCCTGTGACTCTCTGCACTGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAACCTTGGCCACT TCACATGCCCCACCACGATGCAAGAGCTTTGGGATGATTCGATTACGCCGAATACCACGCTTTACAGGCTCATTCACACA TGGTTCTCACAGAAGTATATGTTGATGAAGAAGAGGTCAGAGGATGTGCAGGGTAGAGCTTCGGAGCTTGTCGAGACTCT GAAGAAGGTGAAGGGGCAAGCAAGAGTTCAGGCTCTCAAGGAGCTTCATCATGTGGTGGCTGCTCATGGGACTGCCCGGA AGACTGTGATTGATGAAGGTGGTGTTTCTGTTATGTCTTCATTGTTAGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAA GTGATTGGTATTCTTGTGAGTTTGACACTTGATTCCGAATCCAAGCGGAATCTCACGCAGCCTGCCAAGATTTCGTTGAT GGTGGATATATTGAATGAGGGTTCGATCGAGACCAAGATCAATTGCACGCGGCTGATTGAATCGTTGATTGAGGAGAAGG ATTTCCGGTCCGAGATTATCTCGAGTCATAGTCTGTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAGAGACACAGCAAT GGAATTTCCCCTGGGTTGAGCCTTCTTAGAACAGTGTGCTTTTATAAAGAAGTTAGGATTTTGTTAGTGAGCATTGGGGC TGTTTCTCAATTGGTTGAATTGTTGTCGGGTTTGGACCCTGATTGTTTGGAATTAGCGCTTTCTGTGTTGGATTCGTTGG CGTCGATACCTGAAGGAAGAGTGGCTTTGAAGGATTGTTCCAACACCATACCCATCATGGTGAGACTGTTGATGAGGATC TCAGAGAGCTGCACCCAGTATGCATTGTCAATCCTGTGGTCCGTGTGCAAGCTCGCGCCCGAGGAGTGCTCGTTGATTGC CGTTGATGCAGGGCTTGCTGCAAAACTCCTCCTCGTGATTCAGAGTGGTTGCAATCCGCTATTGAAGCAGCAGTCCGCCG AGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA
CDS sequence (LotjaGi2g1v0411500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGATGTTTCAGCCTTCTAAAAGGGACATGGTGGCGGGATTTGACGGTAGCGGCGACGGCCAGATTCTAGATCTGGA CACCGCCGTCAAAGACGGTGTCCTAGGTGGGGTTGACGGCGGAGTTTTGGGAGGTGGGGTTTGTGAGAAGTTGGATCTGG CGAACATGATTCAAGAGATGGAGCTATGTGAGGTTCCGAGTGTGTTCATTTGTCCAATCTCGCTTGAGCCAATGCAAGAC CCTGTGACTCTCTGCACTGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAACCTTGGCCACTTCACATGCCC CACCACGATGCAAGAGCTTTGGGATGATTCGATTACGCCGAATACCACGCTTTACAGGCTCATTCACACATGGTTCTCAC AGAAGTATATGTTGATGAAGAAGAGGTCAGAGGATGTGCAGGGTAGAGCTTCGGAGCTTGTCGAGACTCTGAAGAAGGTG AAGGGGCAAGCAAGAGTTCAGGCTCTCAAGGAGCTTCATCATGTGGTGGCTGCTCATGGGACTGCCCGGAAGACTGTGAT TGATGAAGGTGGTGTTTCTGTTATGTCTTCATTGTTAGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAAGTGATTGGTA TTCTTGTGAGTTTGACACTTGATTCCGAATCCAAGCGGAATCTCACGCAGCCTGCCAAGATTTCGTTGATGGTGGATATA TTGAATGAGGGTTCGATCGAGACCAAGATCAATTGCACGCGGCTGATTGAATCGTTGATTGAGGAGAAGGATTTCCGGTC CGAGATTATCTCGAGTCATAGTCTGTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATTTCCC CTGGGTTGAGCCTTCTTAGAACAGTGTGCTTTTATAAAGAAGTTAGGATTTTGTTAGTGAGCATTGGGGCTGTTTCTCAA TTGGTTGAATTGTTGTCGGGTTTGGACCCTGATTGTTTGGAATTAGCGCTTTCTGTGTTGGATTCGTTGGCGTCGATACC TGAAGGAAGAGTGGCTTTGAAGGATTGTTCCAACACCATACCCATCATGGTGAGACTGTTGATGAGGATCTCAGAGAGCT GCACCCAGTATGCATTGTCAATCCTGTGGTCCGTGTGCAAGCTCGCGCCCGAGGAGTGCTCGTTGATTGCCGTTGATGCA GGGCTTGCTGCAAAACTCCTCCTCGTGATTCAGAGTGGTTGCAATCCGCTATTGAAGCAGCAGTCCGCCGAGCTTTTGAA GCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA
Protein sequence (LotjaGi2g1v0411500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPMFQPSKRDMVAGFDGSGDGQILDLDTAVKDGVLGGVDGGVLGGGVCEKLDLANMIQEMELCEVPSVFICPISLEPMQD PVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIHTWFSQKYMLMKKRSEDVQGRASELVETLKKV KGQARVQALKELHHVVAAHGTARKTVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKRNLTQPAKISLMVDI LNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGISPGLSLLRTVCFYKEVRILLVSIGAVSQ LVELLSGLDPDCLELALSVLDSLASIPEGRVALKDCSNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSLIAVDA GLAAKLLLVIQSGCNPLLKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 449 | 410 | 2.3E-243 | – | |
| PANTHER | 40 | 449 | 410 | 2.3E-243 | – | |
| SUPERFAMILY | 60 | 135 | 76 | 9.08E-26 | – | |
| Gene3D | 64 | 138 | 75 | 3.6E-25 | ||
| ProSiteProfiles | 64 | 138 | 75 | 40.152 | ||
| Pfam | 65 | 135 | 71 | 1.6E-14 | ||
| SMART | 68 | 131 | 64 | 1.7E-28 | ||
| CDD | 69 | 111 | 43 | 5.92628E-24 | – | |
| Gene3D | 139 | 438 | 300 | 4.9E-22 | ||
| SUPERFAMILY | 235 | 435 | 201 | 7.04E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi2g1v0411500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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