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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0412300 |
Transcript ID | LotjaGi2g1v0412300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT3G49690.1 myb domain protein 84; Swiss-Prot: sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3; TrEMBL-Plants: tr|A0A151QVQ0|A0A151QVQ0_CAJCA Transcription factor RAX3; Found in the gene: LotjaGi2g1v0412300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90926147..90928068) extracted from Lotus japonicus Gifu genome v1.2.
ATTAACTCTCACAATCTCCAGGCTACATTCTCTCTCCCCTGCAGTAGTCCCCTCCACTTTATATATAAACACCACCATTA TTATCATTATCATTGTCATCCATCAACTTATAGTAAAGATTGTCTTTATTACCTTAAAATTCAGACACACACAGCAGGAG GCAGAGCAGAGACATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAAAGAGGCCCATGGTCACCTGAAGAAGATG CCAAACTCAAAGCTTACATCGATCACCATGGAACCGGTGGAAACTGGATTGCCCTGCCACAAAAGATAGGTATGTATCCA TTGTCCATCAGTATTCGTCAATCTATATCCCAAATCAAATCATTTTACCGCATACAATGATCAACATAATTAAATATATG CATATATGTAAGTCATAACTTTACCAATCTCAATTAAGAACCCAAATTTCTATATATTATATTGGAGTGTTTCTTATTTA TGTTGTGCATGTGTGTGCTCTAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAA ACATTAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAACCTCTATGTTAGTATTGGAAGCAGGTAAATT CCTTATTGATCTGACTAACTATTAGAATTCGAGTTATCCCAAAACTAGTTCAAGGGTAATAATTGCTCTGTACCATAAAT TAAGACTTATTTAGTCATATTCGTAGTCAATTTGAGAGTTTCAACACACCATCTCGTGCTCAGGATTGAGCGTGAAGTTC ACAGTATGAGATGTCTGCGGGTGGTTCTTTTATGAGTGACTTAATAAAAAGATCGAGAATAAAGTTTGATATCATATTAG AATTCGTAATAGAGTTAGTCCTATCCAAATTTCTAAGAATAAGGGGCTTCTTTTCTTTCCTTTACTATAACTATGGACTC CATGATTCATGCCTTAAAATTCCATGTAATATATGCAGGTGGTCTATTATAGCAGCACAGTTACCTGGGCGCACAGATAA TGATATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTCCTTGGCAAGCAAAGGAAGGAGCAACAGGCTCAGGCTC GCCGAGTCAGTACCATGAAGCAAGAGATCAAAAGAGAAACAGATCAGAATTTGATGGTGGCTTCTGGAGTTAACACAACT CATGCAGCTTTCTATTGGCCTGCCGAGTATTCTATTCCAATGCCAGTGGCAAATGCTTCCATCCAAGACTATGATTTTCA CAACCAAACATCCCTCAAGAGCTTGCTAATCAACAAACAAGGGGGAGTTAGATTTTCCTATGATCATCAACAGCCATACT CCAATGCAATCACTGCCACCGCAAATTCGCAAGACCCTTGTGACATTTATCCTGCATCCACAATGAACATGATAAACCCG GTGGCCATGGTGAGTAATGCAAACATTGGTGGAACCACTTGTCAGCAATCAAATGTATTTCAAGGGTTTGAAAACTTCAC AAGTGATTTCAGTGAGCTAGTCTGTGTGAACCCACAAACAATAGATGGTTTTTATGGAATGGAATCCTTGGAGATGAGCA ATGTCAGCAGCACCAACACGCCTTCAGCAGAAAGCACTAGTTGGGGAGATATGAGCTCTTTGGTTTACTCACCTTTGGTT TCTGACTATTTTGGAATGCAAATGCAATAACAGCTTTGTGTATAATATGGGGTGGTGTAAATTTGGAGTGATAAAATTAA ACATTTGGGATTGACAAACCCTAATGAGTTCAATTTCTCTCACATTTGTTGTTGTTTTTGTGGTTTCTTATTTTCGTTCC AATTGTTTTGAACTTCTTCCATTTGATTCTCATTATGTTTGGATTTCATGCATTGCTATAATATATAAGCTACAGAATGA GG
CDS sequence (LotjaGi2g1v0412300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAAAGAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAAGC TTACATCGATCACCATGGAACCGGTGGAAACTGGATTGCCCTGCCACAAAAGATAGGCCTTAAGAGATGTGGGAAAAGCT GTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATTAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGC AACCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCTGGGCGCACAGATAATGATATAAAGAA CTACTGGAACACAAGGCTGAAGAAGAAGCTCCTTGGCAAGCAAAGGAAGGAGCAACAGGCTCAGGCTCGCCGAGTCAGTA CCATGAAGCAAGAGATCAAAAGAGAAACAGATCAGAATTTGATGGTGGCTTCTGGAGTTAACACAACTCATGCAGCTTTC TATTGGCCTGCCGAGTATTCTATTCCAATGCCAGTGGCAAATGCTTCCATCCAAGACTATGATTTTCACAACCAAACATC CCTCAAGAGCTTGCTAATCAACAAACAAGGGGGAGTTAGATTTTCCTATGATCATCAACAGCCATACTCCAATGCAATCA CTGCCACCGCAAATTCGCAAGACCCTTGTGACATTTATCCTGCATCCACAATGAACATGATAAACCCGGTGGCCATGGTG AGTAATGCAAACATTGGTGGAACCACTTGTCAGCAATCAAATGTATTTCAAGGGTTTGAAAACTTCACAAGTGATTTCAG TGAGCTAGTCTGTGTGAACCCACAAACAATAGATGGTTTTTATGGAATGGAATCCTTGGAGATGAGCAATGTCAGCAGCA CCAACACGCCTTCAGCAGAAAGCACTAGTTGGGGAGATATGAGCTCTTTGGTTTACTCACCTTTGGTTTCTGACTATTTT GGAATGCAAATGCAATAA
Protein sequence (LotjaGi2g1v0412300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKRGPWSPEEDAKLKAYIDHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC NLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSTMKQEIKRETDQNLMVASGVNTTHAAF YWPAEYSIPMPVANASIQDYDFHNQTSLKSLLINKQGGVRFSYDHQQPYSNAITATANSQDPCDIYPASTMNMINPVAMV SNANIGGTTCQQSNVFQGFENFTSDFSELVCVNPQTIDGFYGMESLEMSNVSSTNTPSAESTSWGDMSSLVYSPLVSDYF GMQMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 7 | 68 | 62 | 1.9E-19 | – | |
PANTHER | 8 | 324 | 317 | 6.9E-104 | – | |
PANTHER | 8 | 324 | 317 | 6.9E-104 | ||
ProSiteProfiles | 9 | 62 | 54 | 14.759 | ||
SUPERFAMILY | 11 | 109 | 99 | 2.47E-26 | ||
SMART | 13 | 64 | 52 | 8.2E-12 | ||
Pfam | 14 | 62 | 49 | 2.3E-13 | ||
CDD | 16 | 62 | 47 | 1.99151E-9 | ||
ProSiteProfiles | 63 | 117 | 55 | 21.758 | ||
SMART | 67 | 115 | 49 | 4.4E-11 | ||
Pfam | 69 | 111 | 43 | 1.2E-9 | ||
Gene3D | 70 | 146 | 77 | 3.2E-19 | – | |
CDD | 71 | 113 | 43 | 9.14976E-9 | ||
Coils | 122 | 142 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0412300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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