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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0416200 |
| Transcript ID | LotjaGi2g1v0416200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|A0A1J7FXI4|A0A1J7FXI4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91393118..91398644) extracted from Lotus japonicus Gifu genome v1.2.
GAAATATAATAAAAAAGTTGTCAAGTAGTATTATTTAATAAATTAATTTTATAGTCTAAACTAAAAAATGACAAAGCATA AAATATGGAAAATATCATATCTCACTTGATTTATTAATTAAATTTACATATAGGATAAAATAAATAAAACACAAATTAGG GGCATGCATGTCATTTCCGCCCCAGACTCACAACTCAGCACGTTGCGAATGCCAGAGTGGCTCTCTCTTTCTCTTTCTCT GTGACGTTATCTCTCTCTCATCTTGTTCTATTCTCTTCCCTTCCCTGTGTCAATTTTGTAAACCCAATCAATCATTCGCA ACTGTAGAATCGTCGATTCCTTCCTTCTCAAACTGTAAGTTTCTTCTCCACTTCTGACCCCTCCATTTATACTTAATTGC TTTTCGGTTCCACGAATCGCCGAACCTTCCTCCACAATTTTCTCAGCTACACACTTCACTACGAACAACACCATTCAATT TCATCTCAACCAACATGGTCGATCACTCAATCATATATATGTTTTCAATTTTTACAATCGATGATATTAAATTGCATTCA TTCTTCACACAATTCTTGTTTTCCAGATAGTTTCTAATTATCATTCACTGATTTTATATGATAATTTGGGGAAATGCCTG TTTCTGCAGAAAATTACATAGGGTTTTGGCCTCTGTTTCCGAATTCTGGTAGAGGATGGCGTGTAGGGGGTTTTGGGAGT GCCTTTTGAAGCTTTTTAACTTCATAATGACCTTGATTGGTCTCACCATGGTGGGATATGGGATCTATCTGCTGGTTGAA TTCATCAAAGCTTCAGGTAGTGATGATGACACACCGGCGGTTTCTCCGGCTAGCGATGATCAAGCCCTAATTCAACTTGG TCGACCGATGCTTTTGGCGGTGTCTCTATCTGAGAGCATTTTTGATAAGTTGCCCAAGGCTTGGTATGCTCACTGCACCT TTCATATTGTTGCACATTCATATTGTTAATTTTGGATGAAGTGATAAAATCCAATTTATATTGTTTTTGTACTGTCTAAT CCTAATTGCATGTTTCATATCTGGCAGGTTTATTTACTTATTTATTGGTATTGGAGTAGTTCTCTTTGTTATTTCTTGTT TTGGTTGTATTGGAGCGGGGATGCGGAATGGATGCTGCTTGTGCTGTGTATCCTTATAGAATGAATGTCTTATGCTATGC TATGACTAAAAGTATTTCATGGTCTCATAAATTTCCACTAACTTTCACTTGAGACTGAGATCTGATATTTGATGTGTATT TTCATAAATGGAATATACAGTATTTATATACATGTTTAACTAGTCAATCCCTTAAGTTTTGGGATTACAATATTAGCTAA ATAGGGAAACATTGGAGACTTTGATAATGTGATGCACAGCAAAATATGCAGAATCTGCACCCAATCACTTTAATAGAACA GAATAATATCTCAACACTCCCCTTTAAGCTAAAGCGTATAGATATGCGTCCAACTTAGATAGAACATATGTATGAGATAT CCTCAGACCTGTAAAGACTTAGTGAAGATATCAGCAAGCAAATTCTTGGAGAAAACAAAAGAAGTTTGATTATGCCAAAA AATTATGTTCTATGATGGAATGACAATAGAATTCTACATGCTTTGCTCTCTTATGAAATACTGGATTGAGGGAAAGGTGC TAAGTGACTAGTTATCACACATGAACTCTCTGAGACCAATCTTGCAGTAATGTAATTGTTGTAGTAATTGCTTAAACCAC AGGGGCTCACAAGTTGTGTGAACCACAGCCCAATACTTAACTTTTGTACTTGACCAGACAAAAACACTTTGCCATTTACT CTTTCATGACATAAGATTTTCACCCATTCAAACAAAATAACCCAAATTGAACCATCTATGGTATCACTTGCCCAATCGGC ATTTGAGGATCCAACTATCTCTGTGTGACCTTGGTATGTGCCTTTCTTGGCAACCCGTTGATGTAGGATTTGAATACTGC TTGCCAATGACTATCACAAGGGGAATTGAGGAATGGACTTATAATACTGATCGAAAAAGATATATAAGTCGAGTCATTGT GAGATAATTTAATTTTCTCATTAATCTTTGATATCTTCTTGTGTCAGGATAGGGCTGCCCTCATTGGGCTTAAGCTTCAT ATCAGGGTCCATGGGGGTGTCATCTGGCCTGCATTCTTGACGACCTATCTTCTCAAACATGTCAAGAGCATACTTCCTCT ATGAACAACTCTGCTTGACTTTGACTGCACCCCCTCAATCTTAAGAAAATAATGCAAAGGGCACAAGTCCTTAGTCTAAA AGTGATGAAAGAAGTGTTTTTTAAAGACTTTTATACCCTCTTGATCATCACCACTCCAGTGATCACAGTTTCATCCACTT AAGTTTCTAGATATATTTATTTGATGATGAGCATTTAAAGAAAACAATGAATATATTAACACAATAATATCTTAACAGAT ACGAAGTATGAGTTGAAGCTTATCTTCCACTTTCCTGTTGTTTGTAGCAGTATGTGTGTGCATATATACATGCATTAATC TGTCATAGTCTTAATGGTAATATTATGAGTTTCCTTAAGTCAACAAAGTATTCGATTCTTGTGGCGTTGTTGATCTTAGT CGAGCTGGGATGTGCAGCCTTTATATTCTTTGACAAAAGCTGGAAAGAAGTAAGTAAAATTGTTTATGGTAATTTATGAT CTGAAATTAAATAAGATATATTGCCATCTTACATTTATATATATAATTTTTTTGTTTTCAGGTAGTTCCATCAGACAAAA CTGGAGATTTTGATACGATATATGAATTTCTGAGAGAGAATTGGAATATTGTGAAATGGGTTGCTCTTGGGATTGTTGTC TTTGAGGTAAAAAAAAAGTTGTATGATTGGCTTTTAAAAGAAAGCAAATTTGTTTTGCAGACTCGCGTGTATCCTTGTGC ATGTACCCACTGCAGGTCCTAAGATTATCATTGGGCCAGTAAAAGATTGTTTGAGCTTTTGATAAGAAGATTACACTGGT TTTCTTCGCTGAGAGATACATCTGAGAGACTAGCAAGACAAGGGAAATAAATTGATTCATCATCTTGTTAATCTCATGAG TCACTCATCAGTCATCAACGACAACGATGATAGGATTTTAGTCCCCCCACCCTGGATTTAAGCAATAGCTCCAGCCCAGG AGCCAACTTTTTCAATGATATTTCTTTTTTGATGACTGATTAGAAAGTGTTATAGGGATATACACGGCGAGTCGTGGACC TTATTTATTGTACGAAATAACAGTTCTGATATTAATAGGTGTCAAGGAATATAAAGAAAAAGCTGGAAGAGACGAAGGAA GAGGGAGTAGTAAAGAGAGAAGTTTAAAAATTGCTAATTCAGCAATAAGCTACTATGAAATTCAGGAATTTTGGAAACAA ATTAATGCCCTATAAGAAGCCTCGCCTTATCTGTTGGTATAATATAATATTCCGCTAATTCTGAAATGTACTTAGAGTAC TGTATTGAAATGTCTTCACCTAACTTGCTCACCTACCACTAGAAGGAGAATGCTTTAAAAATGTAGCGATGTAATGTAAC ATGCCCATTGTTATGTTTGTTGAACATAAAATTTGGTGAATTCTTATCATATATTGTTATGTTTGCAGGTCCTTCTTTTC TTGTTAGCCCTTATTGTTAGGGCCTCAAATAGACCAGCAGATTATGATAGTGATGAAGAGTTCATCAATCCAAGGCAGCA AGCTCGGCAGCCATTGCTCAACCGACCAGCAGGTCCAGCAACAGGCCCCCCAGCTTCTGGGACACTTGATCAGCGCCCAA GCAGAAATGATGCATGGAGTACAAGGATGAGGGAGAAGGTTTAAACTTGTTTTCTTCAGTTAACTTTGTCTTATTTTTGT GATGCAATTTTTTTTACGCTTTGTCTGAACTTTTATGTGTGCCAATTGAAACATTTTGAAAACCAAATGAACTGCAAAAT AAATGCTTTTGGGGCTGTGAAAGTAGCTCTATCGTTCGTGCTCCTCACCTGAGGATCACTCGCTTGATTAGCTCATTTCC CTCCGCGGGTTTTCCCTGCAGGGCAGAGACACACGAGAGTACTTGAGGATTGCACTACCATACTTGTGTGTTGATGTGCT CGAGCCCTCATAGCCTTATGGTTTACTAGGCATTTTCCCCTACAAATATGTGTGTGTATGGCTTTGACGTTTTCCTTCCT AAGTTAAAGTTCTGTCTTTTTCCTGTCATATTTGATCGCCGTTGAGTGCCAAGAAAAGGATGATCTTTATGCAGTCGTCT AGTTTTTTACCACTGTCCCAACCATCCATCCACATATGTGTATGTGTGTGTGTGTCTGGACTCTGGGTCTCTTTCTGTGT GTAATAGTAGTTTCTTTCGGTCTAAGTTTGTTGTGCATTTTAATTTTTATTGAGTTTCCTGATATAACCACAAAAGCCCT TTTACATTTGGTAGAGTTAGCTACATGAATCAAATGACACCACAATTTCCTATCATGAATCACTGTAATCAAGTGTTTTT TTGATGAAGTTACATTTTTTAAGAACATTGCATTATTGAAATAGCATTGTTCAAATAATTTTGTGGGAGATTTTATGAAG TTTTCAATCAAGATTGTTACATTGACTTCATGTCTCAAGTGAATGGCCAAACCTGAATTATATCTAATGTTTTCCCGATC GCAAAGCAGGATATCCTTTTCACTTAAAACACTTTTTATTGGTTTTGTTAGTTGTAGCTTTTGTTGTTACTGTTGTATTA TGTGTGGTTTGTTTTACTGTCTAACACTATACTGCATTTCTGCTTATTCAGTATGGGCTTGATACTTCAGAATTTACATA CAACCCATCCGAGTCACAAAGGTTCCAGCAAGTAAATGCACCTCCAACTGAAGAAAGGAGTCGCTGTACCATCATGTAAT CACTTTGTGGATGCTATTCAAAGCCATGGCAGATTGACTTTCTATTATTATTTTTGTGGTCAATGCCTTTGAGACTGGAA ATTTGTTGGAAAAAATCTCTGTTGCTGAGTTTTTGTACAACTCGCATATTACTGGATAATATGACATTGGCAACATCATG TTCATTTTATATTGGGTGTAATATTGTGTTGTGTCATCTGGGTTTATTTTGGCGTTGCTTATGTTGTTTAGGATTAGGTG ATAGGGGGTGATGATGGTTAGAATCTCCATTTAAGAAGACATGGATTCAAATTTACATGGACAGTAATTTTTTTTTGTCA AGATTTATTATCGATAGGGTGCTTATGTGTGCAGATTTAAATTTTAGAAAGTGCAATTACAGGGTGTGGTGTGATTCAGA TCCACATTTGTATTTTGTAAACTAAATATAATTTTTTAGATCTGGAATTAGGGAAAAATTTCAGATAGGAATGACAATTA GATTTAGACTGAACGGTACTCATAAATAAGTAGTCATAAAATTTGGGTGAGGGTATGATAATAATAGTACTTATTGTTAC CTACTCG
CDS sequence (LotjaGi2g1v0416200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGTAGGGGGTTTTGGGAGTGCCTTTTGAAGCTTTTTAACTTCATAATGACCTTGATTGGTCTCACCATGGTGGG ATATGGGATCTATCTGCTGGTTGAATTCATCAAAGCTTCAGGTAGTGATGATGACACACCGGCGGTTTCTCCGGCTAGCG ATGATCAAGCCCTAATTCAACTTGGTCGACCGATGCTTTTGGCGGTGTCTCTATCTGAGAGCATTTTTGATAAGTTGCCC AAGGCTTGGTTTATTTACTTATTTATTGGTATTGGAGTAGTTCTCTTTGTTATTTCTTGTTTTGGTTGTATTGGAGCGGG GATGCGGAATGGATGCTGCTTGTGCTGTTATTCGATTCTTGTGGCGTTGTTGATCTTAGTCGAGCTGGGATGTGCAGCCT TTATATTCTTTGACAAAAGCTGGAAAGAAGTAGTTCCATCAGACAAAACTGGAGATTTTGATACGATATATGAATTTCTG AGAGAGAATTGGAATATTGTGAAATGGGTTGCTCTTGGGATTGTTGTCTTTGAGGTCCTTCTTTTCTTGTTAGCCCTTAT TGTTAGGGCCTCAAATAGACCAGCAGATTATGATAGTGATGAAGAGTTCATCAATCCAAGGCAGCAAGCTCGGCAGCCAT TGCTCAACCGACCAGCAGGTCCAGCAACAGGCCCCCCAGCTTCTGGGACACTTGATCAGCGCCCAAGCAGAAATGATGCA TGGAGTACAAGGATGAGGGAGAAGTATGGGCTTGATACTTCAGAATTTACATACAACCCATCCGAGTCACAAAGGTTCCA GCAAGTAAATGCACCTCCAACTGAAGAAAGGAGTCGCTGTACCATCATGTAA
Protein sequence (LotjaGi2g1v0416200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACRGFWECLLKLFNFIMTLIGLTMVGYGIYLLVEFIKASGSDDDTPAVSPASDDQALIQLGRPMLLAVSLSESIFDKLP KAWFIYLFIGIGVVLFVISCFGCIGAGMRNGCCLCCYSILVALLILVELGCAAFIFFDKSWKEVVPSDKTGDFDTIYEFL RENWNIVKWVALGIVVFEVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRPSRNDA WSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRCTIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 283 | 282 | 3.6E-141 | – | |
| PANTHER | 2 | 283 | 282 | 3.6E-141 | – | |
| Pfam | 9 | 141 | 133 | 1.1E-13 | ||
| PRINTS | 9 | 32 | 24 | 1.7E-5 | ||
| Phobius | 12 | 34 | 23 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 35 | 82 | 48 | - | – | |
| Phobius | 83 | 107 | 25 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 108 | 113 | 6 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 114 | 137 | 24 | - | – | |
| Phobius | 138 | 165 | 28 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 166 | 188 | 23 | - | – | |
| PRINTS | 166 | 192 | 27 | 1.7E-5 | ||
| Phobius | 189 | 283 | 95 | - | – | |
| MobiDBLite | 214 | 239 | 26 | - | – | |
| MobiDBLite | 255 | 283 | 29 | - | – | |
| MobiDBLite | 255 | 275 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0416200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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