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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0416900 |
| Transcript ID | LotjaGi2g1v0416900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGX9|I1LGX9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91478943..91481604) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGAATAAAATATAAATAAATGAAGTAAAGTAAACATCTTAAAAAATTATAGTTTTAAACGAATATTATTAATAATCA TAGAAATAAAAACCTGAATTAAATAAAATAAAAAAATGCAATTTGAAAAGGAAACAGAGAGGAAATAAAAGAATAAACGC ATGGCATATATTGACATGCGATTTCGATTCTGTGGCAGATTCCATCACCATTATTCTTGCTGCAAAGCCAAGTGCCAAGG AAGTAACTACCTCCATCTCCATCCATCTCTCTCTCGCTCTCCTTTCATCTGGCAGGTAAACCATGACGGCTTCTTCTGCG AATCGCGTTGAAAGGTAACGTTCTTGCTCCACCATTTGCGATTTTCTTTGATTTCATCTTTCGTTTTCGATACTGCGATT GCTTATACATTTCCATATTCTACATCTTTGTATGCTTTACTCGCCATTCAAAATTCATAACATGGATCGATTAGAAAGCA TGTATGTTGAATTTATTTATTATAAATGTGCAGAGTGCCTAGCCGACTACTATAAGCAGCTTAGGTGATTCATTGGTTTG GATCTATATATATATTTCTATAAATCCAATTCGATGAATTTCTGAATATTATTCAAGATATCGCGATTTAGGGATCTGCA ATGAACCAATCATCTGTCCCGGCCATTTATGATGTAGGTAGTATGATACTTTTGGTTTTTGCATAACTTCATCTTCTAAC TAGCTGAAAATGTCTGCAATGAGTTGCTAAGAGATGTCTTTGTTAACTGAAGGAAGATCTGTTACAATTTTGATCCATTT CCCTTCCGTTTTTGAATATTTTAAGGGGTATCCAATGATGAGTTATCAAATTATCTATTTGACTTGGTTTCTTGTTACAA CTATATGAATTAGTACTCTACGCCCAAACTAGCGAATGCAATCGTGTGTGATATGTCAAATTCTGTCATAATTTCCACGT TCTTGCAGAGAGAGGGGTATTACGAGCTTAAAACCTCTATAGCCACGTGGTCTAGAGTTTGATCTATATTATTTTCATTC TTTTGTATACAAGTTAAATTTTAGCTCTAGGTAAGGTTGCTATGTGCATTATCTATGCTTAGGTCCAGCGTATTCTAGCG TAAGAGGATGTGTTCGTAAATGTACTTCATGTGCTTTCATCTAATAACTTAAGTTTTTGGGGATTCATTGGATGCTTTGT GATAGAAACTTTGTAATATACGCATATCCTGTTTATCATTTGCTGCCCATGTCACTTATCACCTTCATGCTTTGGCCACA GCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTGATATAGACGGGACCCTTTGTGATTCTGATCCT CTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGGTAGTGTTTCTTTTCTTGGTAAAAAAAGTTTTAAGCCTGAACTT TCAGAAAATAGATATTATAGTTTTTTATTGCCATATTCCTCTTATCGTGTTTATAAATCAGCATGATTAAGCACATTTTC AATACCAATTAGAAAATTAACAGAAACTTTGGTGGTTGTCAGATTGGTTTCAATGGAGGTGTTCCCATAACAGAGGAATT TTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGCTCTCTTTCCCGGTGACCTGGAACGAGGTTTGA AGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGGTAAACCCCACTATCTCTCACTCTCTTCCCCTTTTTCCATTGTTGT TCATTCAAATCTTAAGAAGATAATTCCATGATGAACTATCCAGATTGGCGGCTGAGCAAGTAAAGCCTTTAAATGGTCTT GATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCAGTTACTAATGCTCCTAGAGCAAATGCAGAACT CATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATC CAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGAGGTCTGCATTTTTCAT GCATTCTTATAGAATAATTTGTTCTGGTTCTGCTTTTGACAAACCTATTCTGTTGTCATAGGATTCTGTCTCAGGAATCA AAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAAACCCAGAGGATTTACTGATGGAAGCAAAGCCT GCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTGGAAGAACTTGACAAGACTAATGCTTCTTAGAA TTTTGAATTACACTGACACAATTCTTAGTAAAGCAATTAAGTAGCAAGTTTCATATTGAAGTCACAGGATCAGCTGCATA ATATTGTTGTAGGGACGATATCACAATACTAGTTCATTATCAATGTTGCTTTGAAAAGGCAAACAATTATATTCTATAAG CGATTTGTAATAATTTCATTGTTGGCTATGAAATCGCGGGCCGAGACCAATGAAATAGCAATACATATGTGTACTATTTT TTTATACTCTACAAAATATTAGAATCACATCTATAACAAATAATGAAAAATCTTGTTTACATTTTAATTTCAGAGGATCT GATGTGAAATAATGGAAAAAAA
CDS sequence (LotjaGi2g1v0416900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGCTTCTTCTGCGAATCGCGTTGAAAGCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTGA TATAGACGGGACCCTTTGTGATTCTGATCCTCTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGATTGGTTTCAATG GAGGTGTTCCCATAACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGCTCTCTTT CCCGGTGACCTGGAACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGATTGGCGGCTGAGCAAGTAAA GCCTTTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCAGTTACTAATGCTCCTA GAGCAAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTATTGGTGGTGAATGTGAA CATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGA GGATTCTGTCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAAACCCAGAGGATT TACTGATGGAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTGGAAGAACTTGAC AAGACTAATGCTTCTTAG
Protein sequence (LotjaGi2g1v0416900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTASSANRVESQSSLTRLAPLEAVLFDIDGTLCDSDPLHYYAFREMLQEIGFNGGVPITEEFFIETVAGKHNDDIAAALF PGDLERGLKFVDDKEAMFRRLAAEQVKPLNGLDKVRKWIEDRGLKRAAVTNAPRANAELMLSILGLTDFFEAVIIGGECE HAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATRNPEDLLMEAKPAFLIKDYADPKLWAALEELD KTNAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 244 | 238 | 6.3E-134 | – | |
| PANTHER | 7 | 244 | 238 | 6.3E-134 | – | |
| SUPERFAMILY | 18 | 239 | 222 | 3.68E-50 | ||
| SFLD | 21 | 229 | 209 | 5.605E-43 | – | |
| SFLD | 21 | 229 | 209 | 5.605E-43 | – | |
| Gene3D | 22 | 230 | 209 | 3.3E-57 | ||
| CDD | 23 | 208 | 186 | 2.73316E-37 | – | |
| Pfam | 24 | 206 | 183 | 4.1E-30 | ||
| Gene3D | 36 | 104 | 69 | 3.3E-57 | ||
| TIGRFAM | 96 | 206 | 111 | 6.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0416900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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