Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0416900.2

Overview

Field Value
Gene ID LotjaGi2g1v0416900
Transcript ID LotjaGi2g1v0416900.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|A0A0B2SBW7|A0A0B2SBW7_GLYSO BON1-associated protein 2; Found in the gene: LotjaGi2g1v0416900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91479279..91480356) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCACTTATCACCTTCATGCTTTGGCCACAGCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTG ATATAGACGGGACCCTTTGTGATTCTGATCCTCTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGGTAGTGTTTCTT TTCTTGGTAAAAAAAGTTTTAAGCCTGAACTTTCAGAAAATAGATATTATAGTTTTTTATTGCCATATTCCTCTTATCGT GTTTATAAATCAGCATGATTAAGCACATTTTCAATACCAATTAGAAAATTAACAGAAACTTTGGTGGTTGTCAGATTGGT TTCAATGGAGGTGTTCCCATAACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGC TCTCTTTCCCGGTGACCTGGAACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGGTAAACCCCACTAT CTCTCACTCTCTTCCCCTTTTTCCATTGTTGTTCATTCAAATCTTAAGAAGATAATTCCATGATGAACTATCCAGATTGG CGGCTGAGCAAGTAAAGCCTTTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCA GTTACTAATGCTCCTAGAGCAAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTAT TGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATC ACACATTTGTATTTGAGGTCTGCATTTTTCATGCATTCTTATAGAATAATTTGTTCTGGTTCTGCTTTTGACAAACCTAT TCTGTTGTCATAGGATTCTGTCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAA ACCCAGAGGATTTACTGATGGAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTG GAAGAACTTGACAAGACTAATGCTTCTTAGAATTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0416900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTCAGGAGATTGGTTTCAATGGAGGTGTTCCCATAACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAA TGATGATATTGCAGCGGCTCTCTTTCCCGGTGACCTGGAACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTC GGAGATTGGCGGCTGAGCAAGTAAAGCCTTTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAG CGAGCTGCAGTTACTAATGCTCCTAGAGCAAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGC TGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCAT CAAAGGATCACACATTTGTATTTGAGGATTCTGTCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGT ATAGCTACCCGAAACCCAGAGGATTTACTGATGGAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATT GTGGGCGGCTTTGGAAGAACTTGACAAGACTAATGCTTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0416900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLQEIGFNGGVPITEEFFIETVAGKHNDDIAAALFPGDLERGLKFVDDKEAMFRRLAAEQVKPLNGLDKVRKWIEDRGLK RAAVTNAPRANAELMLSILGLTDFFEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIG IATRNPEDLLMEAKPAFLIKDYADPKLWAALEELDKTNAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46193
1 199 199 2.1E-111 –
PANTHER
PTHR46193:SF9
1 199 199 2.1E-111 –
SUPERFAMILY
SSF56784
10 194 185 6.89E-37
IPR036412
Gene3D
G3DSA:1.10.150.240
13 59 47 1.8E-45
IPR023198
Pfam
PF13419
19 161 143 2.4E-21
IPR041492
CDD
cd07505
44 163 120 2.02955E-32 –
TIGRFAM
TIGR01509
50 161 112 3.7E-12
IPR006439
Gene3D
G3DSA:3.40.50.1000
60 185 126 1.8E-45
IPR023214

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0416900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…