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LotjaGi2g1v0416900.3

Overview

Field Value
Gene ID LotjaGi2g1v0416900
Transcript ID LotjaGi2g1v0416900.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase; TAIR: AT2G38740.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9ZVJ5|SGGP_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp; TrEMBL-Plants: tr|I1LGX8|I1LGX8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91479279..91480416) extracted from Lotus japonicus Gifu genome v1.2.

TGGATGCTTTGTGATAGAAACTTTGTAATATACGCATATCCTGTTTATCATTTGCTGCCCATGTCACTTATCACCTTCAT GCTTTGGCCACAGCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTGATATAGACGGGACCCTTTGT GATTCTGATCCTCTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGGTAGTGTTTCTTTTCTTGGTAAAAAAAGTTTT AAGCCTGAACTTTCAGAAAATAGATATTATAGTTTTTTATTGCCATATTCCTCTTATCGTGTTTATAAATCAGCATGATT AAGCACATTTTCAATACCAATTAGAAAATTAACAGAAACTTTGGTGGTTGTCAGATTGGTTTCAATGGAGGTGTTCCCAT AACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGCTCTCTTTCCCGGTGACCTGG AACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGGTAAACCCCACTATCTCTCACTCTCTTCCCCTTT TTCCATTGTTGTTCATTCAAATCTTAAGAAGATAATTCCATGATGAACTATCCAGATTGGCGGCTGAGCAAGTAAAGCCT TTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCAGTTACTAATGCTCCTAGAGC AAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTATTGGTGGTGAATGTGAACATG CCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGAGGTC TGCATTTTTCATGCATTCTTATAGAATAATTTGTTCTGGTTCTGCTTTTGACAAACCTATTCTGTTGTCATAGGATTCTG TCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAAACCCAGAGGATTTACTGATG GAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTGGAAGAACTTGACAAGACTAA TGCTTCTTAGAATTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0416900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTTGTGATAGAAACTTTGTAATATACGCCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTGA TATAGACGGGACCCTTTGTGATTCTGATCCTCTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGATTGGTTTCAATG GAGGTGTTCCCATAACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGCTCTCTTT CCCGGTGACCTGGAACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGATTGGCGGCTGAGCAAGTAAA GCCTTTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCAGTTACTAATGCTCCTA GAGCAAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTATTGGTGGTGAATGTGAA CATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGA GGATTCTGTCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAAACCCAGAGGATT TACTGATGGAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTGGAAGAACTTGAC AAGACTAATGCTTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0416900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCDRNFVIYAQSSLTRLAPLEAVLFDIDGTLCDSDPLHYYAFREMLQEIGFNGGVPITEEFFIETVAGKHNDDIAAALF PGDLERGLKFVDDKEAMFRRLAAEQVKPLNGLDKVRKWIEDRGLKRAAVTNAPRANAELMLSILGLTDFFEAVIIGGECE HAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATRNPEDLLMEAKPAFLIKDYADPKLWAALEELD KTNAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46193
11 244 234 4.1E-133 –
PANTHER
PTHR46193:SF9
11 244 234 4.1E-133 –
SUPERFAMILY
SSF56784
12 239 228 1.97E-50
IPR036412
SFLD
SFLDG01135
21 229 209 5.605E-43 –
SFLD
SFLDS00003
21 229 209 5.605E-43 –
Gene3D
G3DSA:3.40.50.1000
22 230 209 3.3E-57
IPR023214
CDD
cd07505
23 208 186 3.14453E-37 –
Pfam
PF13419
24 206 183 4.1E-30
IPR041492
Gene3D
G3DSA:1.10.150.240
36 104 69 3.3E-57
IPR023198
TIGRFAM
TIGR01509
96 206 111 6.1E-12
IPR006439

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0416900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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