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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0422000 |
| Transcript ID | LotjaGi2g1v0422000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT5G47450.1 tonoplast intrinsic protein 2;3; Swiss-Prot: sp|Q9FGL2|TIP23_ARATH Aquaporin TIP2-3; TrEMBL-Plants: tr|I3S680|I3S680_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0422000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92004928..92007345) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCTTCTTCATCCATGAATCCCTCCCCATTCTCCATGTCCATCATCATCATCATGAACCACCACCACAAAGTCTAAT CTCATCAGCCCCATCCTTCTCTTTTTTCTCCTTTCATTCCCAACCCTCTGCTTTGCAAGTTGCATCCACCAAAATAACAC TCCTTGTCTGCTTTTCTACGAGGGAGAAGCAAACCTAGGTAGAGATTTTTGAAAGATCCCTGTCGAAAATAAAATTGGAG GTTGAAGAAGGCAATTGAATGAAATTAATCTCATAAAACAACGAAATCAACCCACAAACCCCCAATCTATAGCAACTCTT GAAGCACCCAGCTGAAGGTTGAAGCCATGGTGTTCCAGCAAGCACCCGATCTGCACAAATGACTGTTGCAGGTCTCACGT GCAACTCACGTGTTTCCCTCTCTCTTCAGTCCTTCTTTCTCTCTCCAATTGGACATCAACGTAAGCCTCCTCCGTTAACA AATAAACGGCAGGACCAACATTGCAGACGGGCAGCAAAGTCAGGGACCATCTGTGTAATTAAATTAGGTGGGGGACTAAA ATTGTGGAATTAATAAACGTCAGGGACCAAAGTTGCAATTAAGCCTATATTTTATGTAAACTCTTTACTATATAAACCTT GGCAAATGTCTCTGATGTAAAGCATTCACTAATAGCTTTAGCTCCTCTGTTTTGAATTGGCGTTTGTCAAAAATGGCGAA GATAGCTTTGGGTAGATTTGATGACTCATTTAGCATTACCTCCCTTAAGGCTTATCTAGCAGAGTTCATTGCCACTTTCC TTTTCATCTTCGCTGGTGTTGGATCAGCCATCGCTTACAGTAAGTACTTTTGGAGTACGTGCATGTGATTAGTTTTTTTT ATAGACAAATGTTGGTTGTTAGTAAATTAGTACATATTATCTGTCATCAGTGTTCGAACATTGGTCTTTTACCTACAATT ACTCTTAACTCAAGCATGTGAACTACCACTATAAATACTATAGAGTAGTGGTTAATGGGTGAACTATTATATAATTGGTA GATATATATATTATTAATTTTTAAAATAAGATATGTAACAGTTAAATATGATATTTACCGTTGAGATCAAATATCCTACT GGTTTAATATATATGATATTTAATAGATCAATAATATTAAATATATATTATATAATATTTAAAAATTAATTATTACTGGT TTAATTAAGGTTTAGCCATAATTGATCTATTAAAATGTGAATTAGTGCCTTCAACATTTCAATGAGCAACTAGTTTTTAA AACATTGTTTTTTATTCACAACATGGGGATGAAATGGATGTGTTGTGTTATATAGATGAGCTTACATCAGACGCACCATT GGATCCAACGGGTCTGGTTGCAGTAGCTTTGGCCCATACATTTGCTGTGTTTGTATGCGTGTCCATCGCATGGAACATCT CAGGTGGCCATTTGAACCCAGCTGTCACACTTGGATTGGCTGTTGGAGGCAACATCACTCTCCTCACCGGTTTTTTCTAC TGGATTGCCCAAGTGCTTGGCTCCATCGTCGCATGCCTCCTCGTCAGTTTTGTCACCTCCAAGGTATGAAAGGAAATTAT CTCATGTGGAGGCGACCGCCCCATTTTGAACACACTTGGTTCCATCTCTATCTAAAGTTTACCACTAATTAAATACATTT TTATAATCATCCCTCAAGCTAATTTTAGAATATCGTTAGACCAAATCCATGTTATAGAATTTATAATAAATTTTCTGATA TCATATTCATTGGGATTTATTGGCAGAGCACTCCAACTCATGGATTGGCTGCTGGAGTGAGCCCTATTGGAGGTGTGGTC ATCGAGATTGTTGCAACTTTTGCATTGCTTTACACTGTTTATGCCACCGCAGTTGACCCTAGAAAGGGTTCATTGCGTAC CATTGCACCTATTGCTATTGGGTTGATCGTGGGTGCTAACATCTTAGCCTTCGGTCCATTCAGTGGCGCCTCGATGAACC CGGCCCGCTCATTTGGTCCAGCTGTGGTTAGTGGAAACTATGCTGATAACTGGATCTACTGGGTTGGACCATTGACTGGA GGAGCTTTGGGTGGGCTTATCTACGGTGGTGCTTTCCTTTGTCCATATAATTCTGTCTCCGCCACGGAAACCCATCCTTA AATGAAATTGTTCTTGCCATGAATTGTTCATCGTTTGCTGCCTTAAACATCTTGGCTTTTTTTCCTGGTTTTAAAAAAGT GTATCTTTAATTATCTGTAAGTATCCGTTGCTTGTAATAAATTTCTAAATAATTTATACATGTCATGAAGCGTTTTGATT TTTGAAGGCCCTTTTGGCTTTTTCTTTTATATGGATAATTTTCTCATGTGAATTCTGCTTAATATCTATATATATATAAA GGAGACTTGAGTTTTTGC
CDS sequence (LotjaGi2g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGATAGCTTTGGGTAGATTTGATGACTCATTTAGCATTACCTCCCTTAAGGCTTATCTAGCAGAGTTCATTGC CACTTTCCTTTTCATCTTCGCTGGTGTTGGATCAGCCATCGCTTACAATGAGCTTACATCAGACGCACCATTGGATCCAA CGGGTCTGGTTGCAGTAGCTTTGGCCCATACATTTGCTGTGTTTGTATGCGTGTCCATCGCATGGAACATCTCAGGTGGC CATTTGAACCCAGCTGTCACACTTGGATTGGCTGTTGGAGGCAACATCACTCTCCTCACCGGTTTTTTCTACTGGATTGC CCAAGTGCTTGGCTCCATCGTCGCATGCCTCCTCGTCAGTTTTGTCACCTCCAAGAGCACTCCAACTCATGGATTGGCTG CTGGAGTGAGCCCTATTGGAGGTGTGGTCATCGAGATTGTTGCAACTTTTGCATTGCTTTACACTGTTTATGCCACCGCA GTTGACCCTAGAAAGGGTTCATTGCGTACCATTGCACCTATTGCTATTGGGTTGATCGTGGGTGCTAACATCTTAGCCTT CGGTCCATTCAGTGGCGCCTCGATGAACCCGGCCCGCTCATTTGGTCCAGCTGTGGTTAGTGGAAACTATGCTGATAACT GGATCTACTGGGTTGGACCATTGACTGGAGGAGCTTTGGGTGGGCTTATCTACGGTGGTGCTTTCCTTTGTCCATATAAT TCTGTCTCCGCCACGGAAACCCATCCTTAA
Protein sequence (LotjaGi2g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKIALGRFDDSFSITSLKAYLAEFIATFLFIFAGVGSAIAYNELTSDAPLDPTGLVAVALAHTFAVFVCVSIAWNISGG HLNPAVTLGLAVGGNITLLTGFFYWIAQVLGSIVACLLVSFVTSKSTPTHGLAAGVSPIGGVVIEIVATFALLYTVYATA VDPRKGSLRTIAPIAIGLIVGANILAFGPFSGASMNPARSFGPAVVSGNYADNWIYWVGPLTGGALGGLIYGGAFLCPYN SVSATETHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 238 | 238 | 3.2E-119 | – | |
| PANTHER | 1 | 238 | 238 | 3.2E-119 | ||
| Phobius | 1 | 20 | 20 | - | – | |
| Gene3D | 2 | 246 | 245 | 2.9E-88 | ||
| SUPERFAMILY | 13 | 242 | 230 | 7.59E-67 | ||
| Pfam | 14 | 231 | 218 | 7.9E-73 | ||
| PRINTS | 19 | 38 | 20 | 4.4E-53 | ||
| CDD | 19 | 231 | 213 | 1.15893E-63 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| TIGRFAM | 23 | 231 | 209 | 6.2E-55 | ||
| Phobius | 43 | 53 | 11 | - | – | |
| Phobius | 54 | 75 | 22 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| PRINTS | 63 | 87 | 25 | 4.4E-53 | ||
| Phobius | 76 | 95 | 20 | - | – | |
| ProSitePatterns | 81 | 89 | 9 | - | ||
| Phobius | 96 | 122 | 27 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| PRINTS | 100 | 119 | 20 | 4.4E-53 | ||
| Phobius | 123 | 133 | 11 | - | – | |
| Phobius | 134 | 158 | 25 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| PRINTS | 144 | 162 | 19 | 4.4E-53 | ||
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 194 | 25 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| PRINTS | 177 | 199 | 23 | 4.4E-53 | ||
| Phobius | 195 | 213 | 19 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 214 | 237 | 24 | - | – | |
| PRINTS | 214 | 234 | 21 | 4.4E-53 | ||
| Phobius | 238 | 249 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0422000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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