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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0423200 |
| Transcript ID | LotjaGi2g1v0423200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G47500.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68; TrEMBL-Plants: tr|A0A0B2SD20|A0A0B2SD20_GLYSO Pectinesterase; Found in the gene: LotjaGi2g1v0423200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92141088..92146220) extracted from Lotus japonicus Gifu genome v1.2.
GTGCCCTCTTTCTTCTACCTTTTTACTTGCACACACACTGTATATGCATATTATTTCCTCCAATATACTTTAACGTAATT ATTATTCTACTCCCATTCCCATATATATAAATACAATACAACATCACACATTGATATCTCTCTTCACTAGCTCAATCTTT GGCGTTCGATCCATGCTATTAATTATTATCTAATTAATGGCATCTCTCTTAATTCTCATTCTGCAATTTCTTCTGGTTAT TTTCACTTACATATTCTATGCAGCTACAACCGTGACATGCGTACACCACCACCACGACATTGCCTTCAATCCACTGTCTT TAAAGAAGAACCACAGTTGGATCGGACCGGTCGGTCGCCGTGTAATCACAGTTGACGTTAACGGCGGTGGCCAGTTCCAG TGCGTCCAAGACGCCGTCAATGCTGTGCCGGAAAACAATAGAATGAACGTCCTCATTCAAATCAGCGCCGGTTACTACAT GTATGATATGAAGCCTTCAGTTAAATTTAACTTTGTTCTCTGCTATATATTTATTAACTATTATTAATTTAGATGAGTTG ATAATTAATTCTGCATTCTTTTAATTTGTTTGGCATCGCAATATTGCAGAGAGAAGGTGGTGGTGCCGGCGACAAAGCCC TACATTACATTTCAGGGCGAGGGAAAGGGAGTGACGGTGATTGAGTGGCATGATAGAGCAAGTGATCCTGGTCCTAACGG ACAACAGTTGCGAACTTACAGAACTGCTTCTGTAACAGTTTTTGCTAACTATTTTTCTGCTAGGAATATCAGCTTCAAGG TAAAATAATTATTAACTTGTTGAATATTTAACTACTTTATATTTACTGCTTAAGTTGCCTGCAAATAAATACCAATAATG CTGTTAACATGCAGAACACCGCACCTGCACCAATGCCAGGGATGCAGGGATGGCAAGCGGCGGCGTTTCGAATATCGGGG GACAAAGCATTCTTCTCCGGGTGTGGCTTCTACGGTGCGCAGGACACGCTTTGTGACGATGCCGGCAGGCACTATTTCAA GGAATGCTATATTGAGGGCTCTATTGATTTCATTTTTGGCAATGGAAGGTCCATGTACAAGGTAATTAGTTAATTGTCTG CTTTTCTTCATAAGTATTCATTTATGTTCTTTTATGGTAATACCGATCACGGGATTAGAATGTAGAAGACTACTGTTGCA GTTGTCTGTATATTATATTTGAGGCGTTGGTAGTAGCTTGGTCAGGGTCTCAGGGACCAGGAATCAGTGAGTGGTGAGCT AGAAAAAAGGAAACAAACTTTTTTGCCACGTTGTACCTGTGTGTCAGCACACTCTGACTTTTGTAGGAGAAGACAAATCC AAAACAGTGAGATGCATAAAAGAACAATAAAACCATATCAAGCATTGGATATAATAACTACTGAATTTAAAATAAATTCA TGAACTTAAAGATTAAAACAGGTCATAGTGATAGAGGCATGTTATTATGATTTTAGATATGGACATATGGTAGAGATAAA TTATAGCATGTTATTATGATTTTTGATATTGTAGAAGAATTAGGTACGTAGCTGGTGTTATTGAGAGATCAGATCCATGA CCGTGTTCACAAGTTTTACAATGGAAGCGTTAATGTCTAAAAAAGTTGAAACTGCTTTCTATAAACAGTTTATATTCTAT CAAATGTAATCAGAGCCATTTTATCATATGCATAAGTAATTAACTTAACACTTGATAGATCAATTAATAACAAAAACTAA AACATAATATATCCTAATACACAAATTTAAAATAGAAAATTTAGTACAACATCCACAATGCAGACCAGACAGTTACCACC ATCTCTTTGTTATAAGCAACATTGGTTTTTTATTTAGTTATCATTGGAACATACTTAGTTGAAAAGTTTGGTTGTTGAAA AATTAGAGATGTATACTGCATGTTTACGTGGACATAGACAGTAATTCATGTAAATTAAATTGAATAATATGATGCATTTG ATGGAGTGACACAATATGTGATTGATTCAGGATTGCCAGCTTCATTCAATAGCAACGAGGTTCGGTTCAATAGCAGCACA CGATAGGAAGTATCCAAACGAGAAGACAGGCTTCGCGTTCGTAAGGTGCAGGGTGACAGGTACAGGCCCAATATATGTGG GCCGAGCAATGGGCCAGTACTCCAGAATTGTGTACTCCCACACATACTTCGATGATATAGTTGCACATGGTGGTTGGGAT GATTGGGACCATGCCAACAACAAGAACAAGTAAACTATCTAACCTTCCATTCCTCTTCTCTCAATCTCAACTAGCTCAAA TTTCGTATCAAAGGTGCACTTTGTCAGCATCTAATTACAGTAAGATGATTATGTTACACTAAAATATACTACCTATCCTT TTGTGAAAAGTGTTTTGAGTTTGAAATCCTGTCCCTACTACATCCTCCAATCTCTTTCGGCTTGTTCCAATCATGTGAAA GAGAACAATTATTGCATCCTAATGCATGCCATCATGGCTTTAGGAAATAAGTCAACATTTTTTGCGACAAACAACATAAA CATTGAAAAGTTGATTGCTATGACTGAATTAATTGTACCATGGAACAGGACTGTGTTCTTCGGAGTGTACAAGTGTTGGG GGCCTGGAGCAGGGGCTGTGCGTGGGGTCTCATGGGCCAGAGAGTTAGATTTTGAATCGGCCCATCCATTTCTGGTTAAG AGCTTCGTTAATGGAAGACACTGGATAGCACCCTCAGATGCTTAGAAAGAAAGAGGAAGAGAAGAAACAATTTACTTTGT TGCCGTCCATTCAAAACCATTTTTACCTTTTTTTGCTAATAATTCATTCATTCATTCTCCTTGTAGAGTCTTCGTGTGTT TTGTGACTTTTCATTCATTATTCTTTAATCTCATTCAAATGTAATTAATTAATAAAACCCAAAATAATGATGCAATTTTT TCTTTTTACTTTCTCTTCTATACAATTTTCCTCTTGTTCTTTTTCTATCTCTTTCTTTTCCACCACATAAAGCACATCCA CCTTTTTTTTCTCTTAAAAACTAGTATGATTATCCTGTTTTATACATCTGTGAAACTCAGACTATTTTTCAGTGGTTTAG AGCTGAATGTCGAACTCAGTAGCAAAACTTTAAGGGTGTGTTTGAGAGTTTTTGAGGGAGGGGAGAAGCAGCCTTCCTAC TGTTTTTTTTTTGGTCCAAAGCCTTCCTACTGTTTAGGAGCTCCAAATTCAACCAAAACCCCCAATTTGGAGGAACTCCA CAAAATTACTAGAGGAAGGTCTTGGAGAAGTTTTGAAAGGCTTTCAAAAATTCCTCAAACTTTTACCCTCTTATCAAATA AGGGAAGAACTTCTCATAAACCTCTCATTTACTTCCCTCCCCTCCAAAAATAAAACTTGCAAACAAAGCCTAAAAGTGTG TTCGTGAAATAGGGGATGGTAGGAAGACTTGGAGGAGAAGTAGGGGGAGGGTAAGAGAGGGGGAAGTGGGGTAAGCCCAT CCTTTGTTTGGGAGTACTAAATTCCCCAAAACCCTTCAATTTGGGGAACTAAAATATATATCTAAATGAGTTTTAGAGGG GTTTTGGAGGGTTTTTCATAAATACCCCAAAAGTCTTCCCCTCTTAATAATATCTCACAAACAAGAGGAGGACTTCTCAG AAGCCTCTCCCTTCCCTTCTCTCCCCTCGAAAAACTCAATTCACAAACATATCCTAACGGTAGTAATGAGATGCTACATG TTATTGCATATATTTTGATTTCTAAAGCAACTACCACATGAATCAGTATCTTATCCTGTTCTGGACTAGCAAATGTATAC CTATTTCTGTCAGAAAATGTCAAACCTTAGGATGATATAAAACCTTCAGTTTACAGAGAATACGGATTTTGGTAAAGATA ATCAATTTGTCTAAATGTAGTGCTGGTTGATGTTTTTCAAACAAGATAAAGTAATGTGACCAAGTTTCAACAAAATCAGA ATTGGTTCAAAGGGTTCAAACATGCACTTCAGGAGACTAATCTCGATTCCATTTACGTGAAGCTCAAACAACTGAGGAAG ATGTAAATCTTGTCTAACTCAGAATGCTACAATATAGGACTGGAAGAAAACTCGAGAGAATCCTATCTAATATTATATTT ATCATGGATAGATTTAATTGAACAATCAAAAACACTCTAGTGATTTTGACATGATTGGATAACAATCATGCTGAGATTTG AACAGCACTGGTTTACTTCACAAATCCAGCAGCACTCTAATAATGTAACAAACTACAAATGTTAAAACCAATTACCGAAA CAATAAGGGCAAAGCTATCTTAATCATTTCATCAAAGAATCCAAGCAACAATCTAAGCAAGCAAATTACAACTGTATTCA AAACGTATAGCTTGATATCCAACTAACAAAAACACCATTCAGAGTACATAATCAAACCCTTAACTCGGAAAAAAAACGAA ACAGAACAAAAAAGATTAGTCACATGATTGTTGTCTAGCTAAAGAATAACAAGGTTCAGGCTCACTTCTCAGATGAGTTG GGTCCCCTCTTCTTGCCGAATCCAACCACTACAAATAAACCAAAATCAAAATCCTACATCAGAAATCGAACAATTTCGCG TGTTGTAATTTCCTAACAGATTGGAAAATGGTTACTCAATCAAATATGTGAGTGAATTGAATAAACTAGGGTTTGGAGGG TTACCGGCGGTGACGAATCGGCGGTTGTACTGCATGCGCTTGTGGGCACGGCCACGGGGCTTCTTCTTCTTATCCTGCTT GGCAACTTTGGGGGTTTGTCCCCTCACTTTTCCGGCACGAGCAAGTGATCCGTGAACCTTTCCTGCAAATTACATCATAT TGTTATCGATTGATTGATTTTGAACGAAATGAAAACACATCGTGACTAGTTCGATTCAGAGTAACCAGATTGCTTGCTTA CCCATGGCTGAGTGTGAAGATGAATTTCTCTGGTGAAGATTGGGTCGCTCTCCTCCTCGCTGCGGCTGCAGGTGCAAACA GAAGCAGATTACAAGTAACAGCGAGTAGGGTGAGATGATCTATGAGTATTGCTACGATTAGAGTTAGGGTTTTAGAGTTT TGGGCTCCAAAGA
CDS sequence (LotjaGi2g1v0423200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTCTCTTAATTCTCATTCTGCAATTTCTTCTGGTTATTTTCACTTACATATTCTATGCAGCTACAACCGTGAC ATGCGTACACCACCACCACGACATTGCCTTCAATCCACTGTCTTTAAAGAAGAACCACAGTTGGATCGGACCGGTCGGTC GCCGTGTAATCACAGTTGACGTTAACGGCGGTGGCCAGTTCCAGTGCGTCCAAGACGCCGTCAATGCTGTGCCGGAAAAC AATAGAATGAACGTCCTCATTCAAATCAGCGCCGGTTACTACATAGAGAAGGTGGTGGTGCCGGCGACAAAGCCCTACAT TACATTTCAGGGCGAGGGAAAGGGAGTGACGGTGATTGAGTGGCATGATAGAGCAAGTGATCCTGGTCCTAACGGACAAC AGTTGCGAACTTACAGAACTGCTTCTGTAACAGTTTTTGCTAACTATTTTTCTGCTAGGAATATCAGCTTCAAGAACACC GCACCTGCACCAATGCCAGGGATGCAGGGATGGCAAGCGGCGGCGTTTCGAATATCGGGGGACAAAGCATTCTTCTCCGG GTGTGGCTTCTACGGTGCGCAGGACACGCTTTGTGACGATGCCGGCAGGCACTATTTCAAGGAATGCTATATTGAGGGCT CTATTGATTTCATTTTTGGCAATGGAAGGTCCATGTACAAGGATTGCCAGCTTCATTCAATAGCAACGAGGTTCGGTTCA ATAGCAGCACACGATAGGAAGTATCCAAACGAGAAGACAGGCTTCGCGTTCGTAAGGTGCAGGGTGACAGGTACAGGCCC AATATATGTGGGCCGAGCAATGGGCCAGTACTCCAGAATTGTGTACTCCCACACATACTTCGATGATATAGTTGCACATG GTGGTTGGGATGATTGGGACCATGCCAACAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGGCCTGGA GCAGGGGCTGTGCGTGGGGTCTCATGGGCCAGAGAGTTAGATTTTGAATCGGCCCATCCATTTCTGGTTAAGAGCTTCGT TAATGGAAGACACTGGATAGCACCCTCAGATGCTTAG
Protein sequence (LotjaGi2g1v0423200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLLILILQFLLVIFTYIFYAATTVTCVHHHHDIAFNPLSLKKNHSWIGPVGRRVITVDVNGGGQFQCVQDAVNAVPEN NRMNVLIQISAGYYIEKVVVPATKPYITFQGEGKGVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNT APAPMPGMQGWQAAAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCQLHSIATRFGS IAAHDRKYPNEKTGFAFVRCRVTGTGPIYVGRAMGQYSRIVYSHTYFDDIVAHGGWDDWDHANNKNKTVFFGVYKCWGPG AGAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 14 | 355 | 342 | 2.0E-196 | – | |
| PANTHER | 14 | 355 | 342 | 2.0E-196 | – | |
| Phobius | 16 | 22 | 7 | - | – | |
| Phobius | 23 | 358 | 336 | - | – | |
| SUPERFAMILY | 53 | 355 | 303 | 1.36E-83 | ||
| Gene3D | 55 | 358 | 304 | 2.9E-94 | ||
| Pfam | 57 | 349 | 293 | 3.3E-62 | ||
| ProSitePatterns | 211 | 220 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0423200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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