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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0426700 |
| Transcript ID | LotjaGi2g1v0426700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucuronate 4-epimerase 4; TAIR: AT4G12250.1 UDP-D-glucuronate 4-epimerase 5; Swiss-Prot: sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5; TrEMBL-Plants: tr|A0A1J7HWM4|A0A1J7HWM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92437427..92438716) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAACATTGGTTTACCACCGACGCCGGGAAAATTGAAGCCGGAAAAGTATCACCCACCGTCCTCCCTTCACCACCA CCGTTTCAGGTTATCCAAACTCACACTCTTCTCCACCATTTTCCTCGCTTTCATCCTCTTCTTCTTCATCCTCTCCCCTT CCCCATCCCCTTCCCCCACCTCCCCCAACCAAACCCGCTCCTGGGGCGGCTCCGACTGGGAAAAACGCGTCACCAAATCC GCCCGCCGCAGTTCCTCCTCCTCCCTCACCGTCCTCGTCACCGGCGCCGCCGGCTTCGTCGGCAGCCATGTCTCCCTCGC CTTAAAGCGCCGCGGCGACGGTGTCCTCGGCCTCGACAATTTCAACCGCTACTACGACCCTAACCTCAAACGCGCTCGCC AGAAGCTTCTCTCACGCGCCGGCGTCTTCGTCGTCGAGGGAGACATCAACGATTCACCGCTACTCCACAAGCTCTTCGAT GTGGTGCCTTTCACCCATGTCATGCACCTCGCCGCTCAGGCTGGGGTTCGCTACGCCATGAACAACCCTTATTCGTATGT CCACAGCAACATCGCCGGCTTCGTCAATCTTCTTGAAGCTGCCAAATCAGCCAACCCGCAACCCGCCATTGTTTACGCCT CTTCTAGCTCTGTTTACGGGTTGAATTCCAAGGTTCCGTTCTCCGAGAAGGACAGAACGGACCAGCCGGCGAGTCTCTAC GCGGCGACGAAGAAGGCCGGTGAAGCAATTGCGCACACTTACAATAACATTTATGGCTTATCCACCACTGGTTTGCGGTT CTTCACGGTGTATGGTCCTTGGGGTCGACCTGACATGGCGTATTTCTTCTTCACCAAGGATATTCTGAAGGGGAAGCAGA TTACTGTCTTTGAAGCCCCTGATGGTGGAAGCGTTGCTAGAGACTTCACCTACATTGATGACATTGTGAAGGGGTGTTTA GGGGCTCTGGATACGGCGAAGAAGAGTACTGGTAGTGGAGGTAAGAAGAAGGGGCCTGCACAGTATAGGATTTTCAATTT GGGGAACACTTCGCCGGTGCCGGTGAGTGAGCTTGTGAGCATATTGGAGAAGCTTCTGAAGGTGAAGGCGAAGAGGAAGG TGATGCCAATGCCTAGAAATGGAGATGTGAGGTTTACTCATGCCAATATTAGCAGAGCACAGGGGGAGCTTGGTTACATG CCCACTACTGATTTGGCTACTGGACTGAAGAAGTTTGTGAGGTGGTACATTGACTTTTACTCTCCTAGTAATTACAAGGG TCCTTGGTGA
CDS sequence (LotjaGi2g1v0426700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACATTGGTTTACCACCGACGCCGGGAAAATTGAAGCCGGAAAAGTATCACCCACCGTCCTCCCTTCACCACCA CCGTTTCAGGTTATCCAAACTCACACTCTTCTCCACCATTTTCCTCGCTTTCATCCTCTTCTTCTTCATCCTCTCCCCTT CCCCATCCCCTTCCCCCACCTCCCCCAACCAAACCCGCTCCTGGGGCGGCTCCGACTGGGAAAAACGCGTCACCAAATCC GCCCGCCGCAGTTCCTCCTCCTCCCTCACCGTCCTCGTCACCGGCGCCGCCGGCTTCGTCGGCAGCCATGTCTCCCTCGC CTTAAAGCGCCGCGGCGACGGTGTCCTCGGCCTCGACAATTTCAACCGCTACTACGACCCTAACCTCAAACGCGCTCGCC AGAAGCTTCTCTCACGCGCCGGCGTCTTCGTCGTCGAGGGAGACATCAACGATTCACCGCTACTCCACAAGCTCTTCGAT GTGGTGCCTTTCACCCATGTCATGCACCTCGCCGCTCAGGCTGGGGTTCGCTACGCCATGAACAACCCTTATTCGTATGT CCACAGCAACATCGCCGGCTTCGTCAATCTTCTTGAAGCTGCCAAATCAGCCAACCCGCAACCCGCCATTGTTTACGCCT CTTCTAGCTCTGTTTACGGGTTGAATTCCAAGGTTCCGTTCTCCGAGAAGGACAGAACGGACCAGCCGGCGAGTCTCTAC GCGGCGACGAAGAAGGCCGGTGAAGCAATTGCGCACACTTACAATAACATTTATGGCTTATCCACCACTGGTTTGCGGTT CTTCACGGTGTATGGTCCTTGGGGTCGACCTGACATGGCGTATTTCTTCTTCACCAAGGATATTCTGAAGGGGAAGCAGA TTACTGTCTTTGAAGCCCCTGATGGTGGAAGCGTTGCTAGAGACTTCACCTACATTGATGACATTGTGAAGGGGTGTTTA GGGGCTCTGGATACGGCGAAGAAGAGTACTGGTAGTGGAGGTAAGAAGAAGGGGCCTGCACAGTATAGGATTTTCAATTT GGGGAACACTTCGCCGGTGCCGGTGAGTGAGCTTGTGAGCATATTGGAGAAGCTTCTGAAGGTGAAGGCGAAGAGGAAGG TGATGCCAATGCCTAGAAATGGAGATGTGAGGTTTACTCATGCCAATATTAGCAGAGCACAGGGGGAGCTTGGTTACATG CCCACTACTGATTTGGCTACTGGACTGAAGAAGTTTGTGAGGTGGTACATTGACTTTTACTCTCCTAGTAATTACAAGGG TCCTTGGTGA
Protein sequence (LotjaGi2g1v0426700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNIGLPPTPGKLKPEKYHPPSSLHHHRFRLSKLTLFSTIFLAFILFFFILSPSPSPSPTSPNQTRSWGGSDWEKRVTKS ARRSSSSSLTVLVTGAAGFVGSHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQKLLSRAGVFVVEGDINDSPLLHKLFD VVPFTHVMHLAAQAGVRYAMNNPYSYVHSNIAGFVNLLEAAKSANPQPAIVYASSSSVYGLNSKVPFSEKDRTDQPASLY AATKKAGEAIAHTYNNIYGLSTTGLRFFTVYGPWGRPDMAYFFFTKDILKGKQITVFEAPDGGSVARDFTYIDDIVKGCL GALDTAKKSTGSGGKKKGPAQYRIFNLGNTSPVPVSELVSILEKLLKVKAKRKVMPMPRNGDVRFTHANISRAQGELGYM PTTDLATGLKKFVRWYIDFYSPSNYKGPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 10 | 423 | 414 | 2.4E-232 | – | |
| PANTHER | 10 | 423 | 414 | 2.4E-232 | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 34 | 52 | 19 | - | – | |
| Phobius | 53 | 88 | 36 | - | – | |
| MobiDBLite | 55 | 74 | 20 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| SUPERFAMILY | 87 | 420 | 334 | 2.7E-83 | ||
| Phobius | 89 | 108 | 20 | - | – | |
| Pfam | 91 | 328 | 238 | 8.0E-50 | ||
| Gene3D | 92 | 403 | 312 | 5.4E-93 | – | |
| Phobius | 109 | 429 | 321 | - | – | |
| PRINTS | 117 | 133 | 17 | 4.1E-29 | – | |
| Gene3D | 268 | 415 | 148 | 5.4E-93 | – | |
| PRINTS | 307 | 322 | 16 | 4.1E-29 | – | |
| PRINTS | 342 | 357 | 16 | 4.1E-29 | – | |
| PRINTS | 382 | 399 | 18 | 4.1E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi2g1v0426700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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