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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0427600 |
| Transcript ID | LotjaGi2g1v0427600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cornichon family protein; TAIR: AT1G12390.1 Cornichon family protein; Swiss-Prot: sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4; TrEMBL-Plants: tr|I3SV64|I3SV64_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0427600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92485312..92488338) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAGATCCTGTGCAGTGAATTTTTGAATCGCATGAAATCTAGACCATTAAATTTAACTGCAGGGACATGACATGCAGT TGAAGTCCAACTCCAGAGAATCCGGGTCTGTCCTTGTTAGCGGTCTTGCGTTGATATCTGGACTAAAGCGTGTGGTGCGC GCTTCGCACGTGCGACTACTATGTTCTTCTCTTTCTCTGTGTAATTGTGAATTTGGAAAGTCAAAGTAGGAAGGTAAGAG AAAGGGAGAGGGAGACAGAGCATGGCTGATCTATTCATCTGGCTCATCTCCTTCTTCCTTCTCATTGCCTTACTCGTCCT CGTCACCTACCAGGTACACACACCCTAATTCTCATGATTCATTATTGCTAGTTAGGGTTTGGTGGTGTGAATGTGATTTA ACAGGGTGGATGAATTCAAATTCAATTTGATGAGTTTCTTTCAAAACATGATCCATCATTCATTGCTAGTTAGCTTTATC TGGTTTTCTGAATTTATATCCTGAGGAGTTGTATTACTTATTGGAATTTCTCAAGGATTGCTATGATGATTGATGAACTA GTTACTTGTGTTTCAACATTTGTTGCAGCTAATGTGCCTGGCAGACCTGGAATTTGATTATATTAATCCTTATGACTTCT CATCTCAAATAAATACCGTGGTCTTGCCTGAATATATTATACAAGGTTTCCTCAGCTGCTTCTACCTTATTACTGGGCAT TGGGTCATGTCATTGTTCTGTGTTCCATATCTCTGCTACAACGTTCGAATGTAAGTTTTCTATCTAATCTATTAAATAGG TTAGGCAAGTTTGTTGCTTCTTAATGATTAGGATTCTTATATATCTTTTGTTCAGAAGAAATCTCTAGGTGGCTTGCTTT GCAGGCTAGTTTGAGAGTGAGGAGGTTACTTGAGTTTCAACTTTGAATTTAGAGTCTTTTGCATTTTTCAAGAGAGCTTT AGTGTGACTGCCTAGCTAGCAAAAGAGTAATTTGTTGATGGTAACAAGTCTCTACTATTTGATAGCAGTAACATATGTTT TGGTTTTTCTATTCATGGAGAGATTCTAATTAGGGTACAATTTGTATGCTGATTATTAGATATTTTGTTTCCAGAAAACC TGCTTGTGCTGTAGTTTGGGTGGGAGAAGAGAGTTTGAATATAGGGTCTTTGAATTCTTCTGCAATTTAGTTCTAGTGTA GGAATGTCCAGAGAACCAACCAAATTATTATTTTTTTATTTTTACAATATTGAAGTTTTGTGCAGTTTTCGCCCCTGTAT GGTTTGACCTGGTTTGTTTAAGCCAAAAATATATGGTTTGGTTAACTTGATGGAGCCTCAGGTCAAACCAAACAATACAT ATGCGCTTATACACACTTTCGTTATTGTGTTTCTTGTTACTAGCTGAAACTATTGAAAAGTTCAGGAGAAGTTTCTCATC AGAATAGTCTGATAGCTTTTGTTTCTCTCACTCGTGGAAGCCCCTATTATAGGCATTTCTGTTTATTACTAGTTATCCTT TGCTTGGTAGATGCTGTTTTCTAGTTCAAGGGAATGCGTTTTTTTTTTACTTTTGCAATAATAATGCTTGACATCTTAAT GAGCTGGATTTTTCTTAATACGGTACTGCTAATTGATCTTAATAATAATAATGCTTGACATCTTGATCAGGTATATACAA AGAAAGCATTTGGTTGATGTTACTGAGATATTTAACCAGCTCTCTTGGGAGAAGAAGCAACGGCTTGTGAAGCTCTTCTA TATTGTTATCACCCTTTTCCTCTCTGTAATTTGGTACGTTCTTTTTAAAATGAGGAATAGTCCAGTCACTTTTACGGATT TCATAAAATAATAGATGTTTTCATTCTTAAAAAGTTCTTTTTGCTGTAGGATGATCTATACATCAATGGATGACCATGAT GATTAATTATGGATTGCTTCTTTTGGGGAGTCCTTTTCTGGAAGTAACCAGTGCAGCAAATTCCCAAACAGCTGTGGTAG AGCTAGTTAATTACTTCTCGTACATGACACAATAATGTGTTTGGATTTCCGTTAAACTCAACGTGGGATCCACGTTGAAG CCAATGTGTCAAAATCCTGCTTTTCCGGTCTACATTAAACTCAACTTGGCAAAATCTAACTTCTCCATTGGTGGTGCCTT TTAGATATGTGAAATCATGTTTGCGCTAACGCCAAAACAAACATGCACTAACATGTTCAACTGCACTTTAGGGGTGAGTT TCAGGCTTGTTTTGAATGTTGGACTGTAAGATATATGTATCATTGTACCGCAAGCAGTTTCATATCCTGGAGTTTTTGTG CTTATTTAACTCACGTCTTCCTGCATGACTAAAAGCATATAGAGGAGGAACTTGTAACTAATGAGGGATTTGTTTTTTTT GCTAATGTACAAGCAATGTATTCATACATATTGAAATTGTTTAGAAGAGCATGTAGAATACATATTTTTCTGACAAGTCT ATTTTCCAATGCCACAAAATACAACCATTGCCATTGGAATCAGTTGTGTACTCTCTAGGATAAATCAACGAGTTGAGCAA TGTTTATTTGATCTTTTTCAGATAAAAGAGAGAAGAGGGATCAACGAACAAAATGTCTTTTTAAGGAAAATTGAACTGGT ACTGTCGTTGTAATCCATGTAGAATTAGAAACAGGATTAGACCTTAATTGTTCTTGAGAAGTCTGTTGAAGATGTTAGGT ATCATCCCATTTTTGGCATGATCTACAAACTTGACAAACATACTATCACATGTAGGCCAAAGAGTACACTGAGAAGCTAG TTATTTTGGGTCCTTGGCTGATTTCAGATGTACCAAATATATGTTGAATAAAAGGCCTGTCATTTACAATCATAAGCATA TTATTACATTTAGGCCGAGCACCATACTCACTCCGGTCCAAAGAGGATCTCACCTTCATGCTTTAACAATTCCGTGGTTA TTTCTCAATTCTCATACTTACACAATAAATCAATTTGTCATCATTTTCACTAATCAACTCACAGATT
CDS sequence (LotjaGi2g1v0427600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCTATTCATCTGGCTCATCTCCTTCTTCCTTCTCATTGCCTTACTCGTCCTCGTCACCTACCAGCTAATGTG CCTGGCAGACCTGGAATTTGATTATATTAATCCTTATGACTTCTCATCTCAAATAAATACCGTGGTCTTGCCTGAATATA TTATACAAGGTTTCCTCAGCTGCTTCTACCTTATTACTGGGCATTGGGTCATGTCATTGTTCTGTGTTCCATATCTCTGC TACAACGTTCGAATGTATATACAAAGAAAGCATTTGGTTGATGTTACTGAGATATTTAACCAGCTCTCTTGGGAGAAGAA GCAACGGCTTGTGAAGCTCTTCTATATTGTTATCACCCTTTTCCTCTCTGTAATTTGGATGATCTATACATCAATGGATG ACCATGATGATTAA
Protein sequence (LotjaGi2g1v0427600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLFIWLISFFLLIALLVLVTYQLMCLADLEFDYINPYDFSSQINTVVLPEYIIQGFLSCFYLITGHWVMSLFCVPYLC YNVRMYIQRKHLVDVTEIFNQLSWEKKQRLVKLFYIVITLFLSVIWMIYTSMDDHDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 136 | 136 | 2.2E-68 | – | |
| PANTHER | 1 | 136 | 136 | 2.2E-68 | – | |
| Phobius | 4 | 22 | 19 | - | – | |
| SMART | 4 | 125 | 122 | 1.7E-57 | ||
| TMHMM | 5 | 27 | 23 | - | – | |
| Pfam | 5 | 123 | 119 | 2.0E-39 | ||
| Phobius | 23 | 29 | 7 | - | – | |
| Phobius | 30 | 52 | 23 | - | – | |
| Phobius | 53 | 81 | 29 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 82 | 109 | 28 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| TMHMM | 113 | 130 | 18 | - | – | |
| Phobius | 130 | 137 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi2g1v0427600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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