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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0432300 |
| Transcript ID | LotjaGi2g1v0432300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT4G11660.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b; TrEMBL-Plants: tr|A0A0S3T5M2|A0A0S3T5M2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92921887..92926352) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGGATGGATAGCGAAACCAACGGCAGAGCACCGCCACGTAACCAGTCACATCCTCTTCCCTCCACCTTTCTTCTAGC CCCTTCCTAGTTACTCTGCGGGCCCCACACACTTTCCTTTCCCTTTATTTTATTTTAATATTTTCCCTTTTCATTTCTCT TTCTTTCTTTCTCTAATTACCCACGGACGGCGGACGCTCCTTCTTACTCATTCATTCCTATCCTATTCTTCTCTCTTCTA ATCTCTCCTGAAACTTCTAGAAACAACACCCACACACCACCTTTCTCCTCCTCCTAACCGGTGGTTTCCACCGCAACCGC TCCCCACTCCGTTTCTGGCTCTCGTTCTCAACAACAACCCAATCCCTCCATCCATCATCCCTATCAAGGTAAACACACAA CAATCACAAAAGTTATTAATTCTTTTTCATTCAAATAGTACTTGTAGGATAGGATAATAACAACAAGGTTAGGACATATA GGTGTGGACACCACCACCGAAGCAGTTACTTATCCCTTTCAATTTGATTGCTAGAATCTAACTGTTTCCTTGCAAATTGA AACAGCTGTTTCGATCGATCGACTGGTTTTTGTTTTTATCAAGTTATTAATGTGAGAGAAACGGAACTAGGTTGAGTTTC AGATCTGGCAGCCAAGTCGATGACATCGGCTGAGCAGACCGGTGAATCAGCACCGGCGGACTCGCAAAGAGCCATTCCGA CGCCGTTTCTGACGAAAACGTATCAGCTCGTGGATGATCCTTCCGTCGATGATCTAATATCGTGGAATAAAGACGGTAAC AGTTTCATAGTTTGGCGACCAGCCGAATTCGCTAGAGATTTGCTACCTAAATATTTCAAACACAACAATTTCTCCAGTTT TGTTCGTCAACTCAACACCTATGTAATTATCTAACCTCTTTGCTTGACTTTTTCTATACTAAAATTTTGTTGGAAGCCAA ACTGATCATAGTTTTGTGCTTGTTTGGTGTTTGCAGGGATTTCGGAAGGTTGTACCTGACCGTTGGGAATTCGCTAATGA CGGTTTCCGGCGAGGCCAAAAGGACTTGCTACGTGACATACAACGACGGAAGATATCATCCGTGGCGGCGGCGACAACGG CAACAGCGAATGCAGTGACGGTGGCAGTGGCAGCACCGGCTCTAGCGGTGGTGTCCCCAGCGACTTCAGGCGATGAGCAG GTACTATCTTCAAATTCATCTGCTCTTGCTGCTGCATACAACAGTAATCCAGTACTACACCGCACTACTAGTTGCACCAC TGCGCCGGAGCTCTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATACTAATGAGTCAGGAGTTGAGTCAATTGAAGG GTCTGTGTAGTAATGTATTCGCTTTGATGAACAATTATGCTTCCGGTGTTAGCCGCCAACCGGAATCGTCATCCGCGGGG AGGGCGGTGTCTGCACCTGAGAAGACTTTGTTGGAGCTTATTCCTGCTAAGGATCTCACCATGCATGTAGCTGGCGGAGT TGGCGATGCTGCTGCTGGCACACCGTGTGAGAAGGAGGTTCCGAAGTTGTTTGGGGTTTCAATTGGGCTGAAACGACATA GGATAGAGTGTGAGGTTGAAGAAGAGAGAGAGGAAAGGAATCAAAATTCGCAAATGCAATCCTCCTCGCAGGAACCTGAT GGTGGGTCTGATATGAAGTCTGGACAACCTGTTGATGGTGATGACTCGGCTGATCAGGAGCCTTGGTTGGAGCTTGGGAA ATGATAATGCTCTCCTCCTTTATTGCTCATAGTTAAGTTAAATGGCAAAAAAGCATTGTTTGGTTGTTGTTTCGTGGCAC ACACATGTTTTGGATATGCTGCAACACATTACATTTCAATGACTTTCACCTTCACCTTAAACTGTAAAAAAGAGGTTATA TGCTCAATTTTGATGAGGTAAATGTTCATTTGATTTAAATAGATAATCAAATGTGTCCCTTCCAATGGAGGGGGAATTGA GTTTGGTGCCCCACCCCTTAGGCTTTGCACCCCACTTTATTAAATACGGAATTTAAAGTTCCGTATCAATACGGAAAATA AAATTCCGTATCTGTTTTAGTATATAATGAGTGGTTGAAAATGTGACACGCATGCTTAAATACAGTACGGAATTTTAAGT TCCGTATTCAATAGGGAGAATACGGAATTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCATAGGTGGGGTGC CAAACCCAACTCCCCAATGGAGGGCAAGTGACTTTAATTTCCATGTTATGGCATACAAGTTCCTGATGATAGTTCTCCCT TAGAGTATTAAGGTGTGAAAGTCGTGATTGCAAGAGCCGTGATTCATTTACACTTCCATTTCTCGCATTTGTGTTTTGTT ATATCAGACTTAACGTAAACGTGATTTCATCTATTTCAAGACACTAAAAAAGAAACTAGAATTTGTCATTTTCAATTTAA AATGATTTTCGGCAAGTGGTTTGAAGTATTGAGGTTTTGGCATTGGCTTCAAGTTGATTCAAGTTGATCCATTTTGAATA CACTTGATTTTTATATTGTATTCTACTATCTATTATCTTTTTTTTCCAAGAATATCACTTTATCATATCTATGATCTTTA ATTTCTTTTTTCCCCTCTTAGCATCAACTTAATTATCAAATCTTGAGGAGAATGAATGAAGCTAATTCCAAAAGAAAGCT ATTCTTCTGTCGACCGGCCGGTGGTTAGAGAAGGATTATCAGCACGTGCAAATTGAGTAAAATTGATTCAGAGATTGCGT GTTTTAGGAGAGCACTTTTGGCATAAAGTGACATGTAGATATCAAGATATGTGTCTGATTTGGGAAATTATTTCCAATTT GATTCATGTATTGTAAATTGTAATGCTTCCACCTTTGGACTAAGTTCAATCCTAAAAATCAAACGTGTTTATTGTTCACT TGAAAGAACCAAATTCAGATCTAAACCAAATATAAACGTGCTAATATTTCAAGATTTCTTACTATTCAACTCAATAAATT TCTCTTCATTAAGCAGCAGTTCATACACTTTAATACTTTATACTTTTTATGAGTTTTTGGTTAAAATCAAATCTATTTAT GCAGTTTGGTTAATTCAAATATTGAATGATAATTTGTCAAATACCATTGGGCCCATGATGAACTTCAAGCAGAGTGTTGA GTACAAAAGATGTGGAACCAAGTTGAAGAAAAACAATGATATGATGGACCCAAAACAAGGGTAGAATATTGCAAAGTTGG GTATGCTTGGTAGCTTGGAAGGTGCCACATTTACCCACTACTTAATTGACTTGTGAAAGCGGTACCCAACAAATTTAATT TTCCACAAGCCTGCCTCAGCTATCATGATATTATTCCACACATAGCTTGTTTAAATTCCAACCCCTCTCTCTTCTTCATA ACTCTATTCTCTATTCTACTATCATGACAACGTTGGAGATCAGCATGGTGTCAGTTGAAGGTCTCGGAAAATACTCCTCC TCCTATTTCATCACTCTCACCAACCTTTCCAACCACCTCGTCTACTCCTACGACGGTGGAGGAGCGGAGGAACACATGTT CCGAGTCCCAGTGGATCATACCTTCTTTTTCGACACACAACACTCGAGCTTACAACTTCATCTGTACAACAAGCGCCGAA TATTGGGACCGACGCAACTGGGGTGGTGCATGATTCCGGCGTTAGACATTGGCTTCCTCAACCTCCGTGATTCCGCCGCA GTACGCTACCTCAGTTACCGGCTACGGGCCACAGACGGTTGTAGGAGCGACATCATCATCAACCTCTCCGTCAAGTTGCT GGGATCTCCGGACACGTGTCAGACTGTTATTGGAATACCAGTTACGGCGGTTCGTGGAGTTGACAAGAAACAACTAGCAG CGCGATGGTCATAGATGAGAGTCGGTGTGGGATCAAGTTCAGGGACGCAACTTGTAACTCTGATCTAATCCATACTTGTT GTCTGGCAACGTCGTCTAGTGACTAGTGACTAGCGGCTGGGGTGGGGCCACATGCAGTGCGGTGCGTAGAAGGTGTTGTC ATTACTTTGTGTAATCTATGGGAAAAGTTTGTAGTGAATAGAGAAAGTAATGTGTGAGGTAATTGAATGGAAAATGAAGT GAAAATTGTGTCAACAATATTATGAATCATAGCTTGTGCACTAAATTACTTTACTTCTTTCAGTTCCCCCCTTAATGATC ATCAATCATCAATGTCTTAAAGTCTTAAGATGATCATCAATCATCACACTTTAAATAATAACAGAGAAACAAAGAGAATG AAAATGTTATGTATAGAAGGACTTAAGAGTATAGCAGCACAACCCTCCTTAAACATATAATCGAGAGTCTCAAAGTCTTA AGATGATTAATATTATGATTATCAGCCGTACTAGCATGTGAGTGTATTTACTGAAACATTCCAATT
CDS sequence (LotjaGi2g1v0432300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATCGGCTGAGCAGACCGGTGAATCAGCACCGGCGGACTCGCAAAGAGCCATTCCGACGCCGTTTCTGACGAAAAC GTATCAGCTCGTGGATGATCCTTCCGTCGATGATCTAATATCGTGGAATAAAGACGGTAACAGTTTCATAGTTTGGCGAC CAGCCGAATTCGCTAGAGATTTGCTACCTAAATATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAACTCAACACC TATGGATTTCGGAAGGTTGTACCTGACCGTTGGGAATTCGCTAATGACGGTTTCCGGCGAGGCCAAAAGGACTTGCTACG TGACATACAACGACGGAAGATATCATCCGTGGCGGCGGCGACAACGGCAACAGCGAATGCAGTGACGGTGGCAGTGGCAG CACCGGCTCTAGCGGTGGTGTCCCCAGCGACTTCAGGCGATGAGCAGGTACTATCTTCAAATTCATCTGCTCTTGCTGCT GCATACAACAGTAATCCAGTACTACACCGCACTACTAGTTGCACCACTGCGCCGGAGCTCTTAGAAGAGAATGAAAGGCT TAGGAAAGAGAACATACTAATGAGTCAGGAGTTGAGTCAATTGAAGGGTCTGTGTAGTAATGTATTCGCTTTGATGAACA ATTATGCTTCCGGTGTTAGCCGCCAACCGGAATCGTCATCCGCGGGGAGGGCGGTGTCTGCACCTGAGAAGACTTTGTTG GAGCTTATTCCTGCTAAGGATCTCACCATGCATGTAGCTGGCGGAGTTGGCGATGCTGCTGCTGGCACACCGTGTGAGAA GGAGGTTCCGAAGTTGTTTGGGGTTTCAATTGGGCTGAAACGACATAGGATAGAGTGTGAGGTTGAAGAAGAGAGAGAGG AAAGGAATCAAAATTCGCAAATGCAATCCTCCTCGCAGGAACCTGATGGTGGGTCTGATATGAAGTCTGGACAACCTGTT GATGGTGATGACTCGGCTGATCAGGAGCCTTGGTTGGAGCTTGGGAAATGA
Protein sequence (LotjaGi2g1v0432300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSAEQTGESAPADSQRAIPTPFLTKTYQLVDDPSVDDLISWNKDGNSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNT YGFRKVVPDRWEFANDGFRRGQKDLLRDIQRRKISSVAAATTATANAVTVAVAAPALAVVSPATSGDEQVLSSNSSALAA AYNSNPVLHRTTSCTTAPELLEENERLRKENILMSQELSQLKGLCSNVFALMNNYASGVSRQPESSSAGRAVSAPEKTLL ELIPAKDLTMHVAGGVGDAAAGTPCEKEVPKLFGVSIGLKRHRIECEVEEEREERNQNSQMQSSSQEPDGGSDMKSGQPV DGDDSADQEPWLELGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 304 | 302 | 7.6E-135 | – | |
| PANTHER | 3 | 304 | 302 | 7.6E-135 | ||
| Gene3D | 15 | 114 | 100 | 1.2E-39 | ||
| SMART | 19 | 112 | 94 | 3.2E-61 | ||
| SUPERFAMILY | 20 | 112 | 93 | 2.29E-36 | ||
| PRINTS | 23 | 46 | 24 | 7.0E-21 | ||
| Pfam | 23 | 112 | 90 | 2.8E-31 | ||
| PRINTS | 61 | 73 | 13 | 7.0E-21 | ||
| ProSitePatterns | 62 | 86 | 25 | - | ||
| PRINTS | 74 | 86 | 13 | 7.0E-21 | ||
| MobiDBLite | 288 | 336 | 49 | - | – | |
| MobiDBLite | 298 | 312 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0432300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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