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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0433700 |
| Transcript ID | LotjaGi2g1v0433700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT1G63470.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q8GXB3|AHL5_ARATH AT-hook motif nuclear-localized protein 5; TrEMBL-Plants: tr|I1LGG0|I1LGG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93039125..93044817) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTTCATTTCATTTTTTTTTGAAATTTTTATTTTTATTTTTTGGTTCTTATTTTTTTGGGCCCAAGTGAAGTGTCA CTCTTTGCTTCTCTTTCCTTTTCTTCTGCAGTGTTCAGTCAAAACCCTAGATTTTCAAATCTACCTTCAATGTGTGATCT TCTTTGAGCTTCTCAATTTCCTGCATTTTCCCTCAACAATTTTCTCAGTAAATGCATGGATGGGAGAGAAGCTATGGCAT TCTCTGGTGGCTCTGCTCCGTATTACATTCATAGAGGAGGGGTTGGTGCCTCTGATCAAGGGACACAGAGTGGAGGCTTC CAACTCCAACCACCCTCTGGGTTCAGACCTTTGTCAAATGCACGGTCTGGTTCTGCATTTGCAGTAGACCATCAACCTCA ACATGGCAGTTTTAGTCCTCATGGTGGTGGTGGTGGTGTTAGCATAGGTGGTTCTTCCTCTCCTGGTACTGGTACTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGAGGAGTGTCTCCTTCAGGTGTGCCTGGGAAAAGGAAAAGAGGGAGGCCTCGGAAG TATGCTCCTGCTGATGGACAAGGACAGGTTTCTTTGAGACTCTCTCCGATGTCTGCTGCCACTGCTAACTCCTCCCCGGG TTCGACAACGCCTTCCCAGAAAGGCCGTCGAGGGCGCCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCATTAGGTA TATTTATATCATATGAGAATCTTTGTCTATTATATTAGAATTTGAGATTTGGCTGCTATAAAGTACTAAATGGTTCATTT TAGTAGAAAAAAATGTGGAGTTATGATGACTGTTATTAAGTAGTTTTTGTCCACATTAATGTTGCCAACATGGTACCAAG ATTACTCTATTGAAATTATTAAGTTGCTTACAAATTCATTTTTCGGGGATCAAATTGTATGTATTTGCTCTAATAAAATT GACGGATAAGATCATGATGAAATAAGTGTACATTTAAATGAACTAAGGTGTTGTTGAAATTGAGTTTTATGTTAAATTGG GATAAATAATAGATAACCATTTTAATTTCTGATTAGCATCCTGTGACTTCTAAATTTTCCATTTTGCTGTTGTATTATAG TGAAGGAAAGGAGTGGGTGGGTGTGCTTTCTTTTTCATACTATTTTTTTTTCCATTTGAAGATGCTTTATAGTTTAAACT GGTAATTTCCATTTCCAACTTTAGTTTAACCTTTATCTGTTTGAAGTTTTATCTATGTTTTGCCATTTTTGTGTTTTACA TCAGTGGTCCAGGGTATTAGCATTTGGTTTCTCTTGATATGGTTACTTGTTAGTCATAATTTCATAAATCCTGCTTCAGA AATCCATAAATCAGTCATAATTGTACTACATAGATCTCCCGGACTCATATAAGACTGACTAAACTGAGGAAGTTATACAG AAACAAGTACCCATCATCATTGTTTCTGATGTTGATCTTTTGCATACATGCTGCATTACTTAATTATTTCGCAGTCCAGA TTCAACTTTCTGGTCTAGACTCCCAAAAAAAATCATTTATTTTTGTATTTTATGGTATTGATGGTAACTCATGGCTGTAT CATGGAAATCGCTATCTTGGTGTGTTTTGCCTTGAGGTGTGTGAACTTCTAACATTTTTTGTTTATATCTTCCTAGGTGA ATGGATGAACAGTTCTGCAGGACTAGCTTTTTCACCTCATGTTATCACCATTGCAGCTGGGGAGGTAGTTATATACTTCC ATCTAACCTTCTCTATAACCCTGAATATAATGGCATTGAGGCTGCATGCATCGAAACAGGAGATGATTGTTTGCTCATGT GGGGTTCTTTTACATTTTAATATTGCATTTGTATAGTGGTACCAGAGTCATTGTTGACAACTTTGACATCAATACCAGGA AAAAAAATTGATTTGCACCCTCCAGTTGCATCAAAAAAGCATCAGATGAAGGATCTTTTGGAACAAAGTGTGCTCCTCTG TTTTTGTTCAAGATATTGATATTTAAATGATAATTTGCCATTCATGACATGCAAGCCGCATGGATGATTAATATAATTGG AAATAACTGCAGGCACACATGGATGGAGTAGTCACGTAGATTGAGATTGCCAATGACATATAAGTTATAGAATGTTAACT CACACATAGACATGGTTTGAGCTGATAGCATGCAAAACTGATGATAATTGATGGAAGTATTTGATTTTAATTTCAGCTAT GAAATACTTACCATAGTTTATTTATTCATATATTAAACCGTCTAGATTTTTAATTAATGTTGCACTTTACCTAAGAAGTT TCTTCAATGATGCATTTTCTTTGTTTCAGGACATTGTTGCAAAGCTGTTGTCATTTTCACAACAGAGACCAAGGGCTTTA TGCATTTTGTCAGGATCTGGGACAGTTTCTTTAGTCACCCTGCGCCAGCCAGCTTCGACTAGTGTCGGTGTTACGTATGA GGTTAAATAACTAAACACTAGTTACCTCCACTACTAACAATTTTACCGTTTTAAGTATCAATTATCATCCTAATGTCTCC TCTCTATTCCTCTCAACATTATCAGTTTAGGGAGTAGATCACAACGGGTACTAAGTTAATTGACTTAGTTCTGTACCATT AAAGTATGTAAGGTTTGCTCCTATGACACAATAGTGAACATTTTTTTTTGCATTTTGCAGGGCCGATTTGAAATACTGTG CTTGTCTGGTTCTTATTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACAGGTGGCATGAGTGTTTCCCTTTCAAGTC CTGAAGGCCATGTTATTGGTGGTGCTGTCGCTAGGCTTATTGCTGCAAGCTCTGTGCAGGTATGTTCTTAAATGCAATCT TGATGTCCTTATACTTCTGGTCTTTCTTATTCTTGTTTCATCTCATTCATGATCTTCTGCCAGAAGTATATAACTATTAA GTTAAACAACTCCAAGGTGATATTGTATTGGAGGTAGTGGAGACTCAAACCTTTCCCTCAAAACCAATAAGAAAATGAGA ACTTGCTTGCTGCAGGTGGTAGTTTGCAGTTTTGTATATGGAAACTCTAAGCCAAAGACAACAAAGCAAGGGTCCACAAC AAAAGATGAGGATGATTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCACCAGGCAGTGCTGCACCACCAAATCAAAACT ACACAGCATCTGCAGCAGGCATTTGGCCTGCATCAAGGCCTCTAGATATGCAAAGTGCACACCAGCAACACACTGGTATT GACCTGATGCGTGGGTGAAAATTTATTATGGAACAGAAGAGGCATTGTGGGTTTGTGTATATACATTATATATATATTTA TCTCGTTGTAAATTAACTGAATTTGTGAGCATTGTGACTCACCATTGGTAGGTGATAAGTTCGCACTAACCTATGCTGTA ACAAATGGATCGTTTCAGGGGTAAGTAACAATCATGATTTATGCCAAAAAAAAATGTCTGGTGAATGGAATGCAAAAAAG TGAAGATTGAGTGGAGTGTGTTGTGTTGAGTGCTAATGGTACCTTGGATTCAAGGTAAATGAAACGCCCGTAATTGCAAG TGCACGGTTTTGTCGAGTGGTATATTATTCTCACAGTAACTGTTGTTGATTACCAGTTATCTACAAATTCAGATTATATA GACAGAGGCCATGCTCAACAATAGCTCCATAAAAAGTTATGTAGTACTTACCTTGTCATTAAGTAGGTAAACTAGGAGAA CATTTGATTATCGTTACAAGTATTGTTAGTAATGGTAGATAAAAGTTGCCTGTAACGATTTTGCTACCCTCATCAAAAAA ATGTAAAGAAAAACAGCAGTTTATATTATTGAAATTATCAAATAAATAAACAAAAGAATGCAGTCAAATTCAATCGTTGT GTGCTTCATCTAATCTGCTAACCCTCTCAAGCAGATTGTTCATTGTAATGGCAAATGCATCCTGAAACTTCTCGAGCTCA GAGTCATGATCCCCATATACTAATCCAGGCAATAGCTCATATATAATATACCTCCTCATGTTTTCCCTCTCTCTTGATGA AATATTGGCTAGCTTCTCCACCACATTGACATTCATTTTTGTAACCTCATTTTTGTCCATAAACACAGAGTACTTATCAT GGTCATCAGGTAAATGCCATGGATATTGGTAGTAGGCTGTGAAAGGATCAAAAACAACTGGGATGCAACCTGATATCAGA GAATCAAAAACAGATTTTCTTGTTGGGCTGTCCCCTGGAGGCTGCAGACAGAACTCAGAGTCAACAAAAAGTTCTATAAT TGACTCTGGTTCATAACACTTGGCAGAACTGCAATTCAGAAACTTGCATTTGCCATCACTAGTTGAAGTACATTGGTCAA TTAACACTGACCTTATGTTGCCCTCTGCACCAGCTCGTGCCGCCCCAGCAAAACTGACAAGGTTTCTACGATTCGATTTA ATGATCTTCAGTTGCCAAGCGATGATATCATTGTCTGAATGTGGGTGGAAATAAGATGGATGTGGAATTCCAATATCGTT CACATGCCATGGCTGGCGTTCAATCAAGAGCTTCATGGGATTTTGCATTTTGTCGAGCTCTAACAATCTAGTACCCCAAG GAGAGTTGCTAGTTCTCCTAAAATCCCATGAAATTTTACCCAACACAAACACATGATCCTTACCTGAATTCCTGTTCCAT GATCTTTGTCTCTCAAGCCACTTCACTAGCTCCAAACCCAAACTGTCCTTCACATCATTTGAAACATTCTTGAAGTGCCA TCGCAAGATATCCAAACCGCCATAGAATGGGACATAGAAGAGCTTTGCATCATTTTCATTGTAAACCCTGCATGGATGCT TCAACACCCTTGAATGAAATATGAGTTCAAGTGAGTACTGATGAGTTTGATACCACCCTTTACCAAGCTTGGATATTGGC TCACCCAAGCCCTTGTTACTGATATATCTGCAGAAATCCTGCCATGGAACCATGTCGCGGCATTGACCCACCAAGTCATT GTTAAACTTCGAGGGCAAATCATACACGTATATTCCTCGACCATCACAAGTTGCATAGTTTTTATCTGATTTCCAGGATC TATGAACCTGTAATTGCTCCTCAATGACCTTCACAGCATTTGCAGCCTCCTCATTTATATCGGTGTTAGCTACTCTACTC GTGACCGGGATACTTGGAAACTTACCCAACTCAGTTGCATTGCTCTCAATTCCAGGAGTAAAAGAATTGTTTTGGTTTGT GGAAATTGGGATTTCAATGGAGGGATGGGTGCCTGCAGAGAGACAATAGAGGCTACTGAGCTTCCTTGTAGAGAAACAAA CATGAATGATATTTCCAGTTATAACGGTGGAGAAGGAAGACCACATGTAAATAAGGATTAGAATGAAGACTGTGGCAGAG ATTCGGCTAACAAAGTTGTATAGAATAGTAAAGCCAAAATAAGAGTGTGTAGGTTCTGGTTTTCTTGATGATTTTGATTT TTTTCTGGATACAGACACGGCCATTTTCAATGTGAGAATTAAGACCCCTAACTTCTGGTTTTTCTAGTAGAGAATTTAAT CATCATATTCTCACCAAATTATCATGCAAGCACGTATACTGAATTTCCTTTGATTAAATAACAATACACACGTCTATGTA CATTGGAGGAAAA
CDS sequence (LotjaGi2g1v0433700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCTGCTCCGTATTACATTCATAGAGGAGGGGTTGGTGCCTCTGA TCAAGGGACACAGAGTGGAGGCTTCCAACTCCAACCACCCTCTGGGTTCAGACCTTTGTCAAATGCACGGTCTGGTTCTG CATTTGCAGTAGACCATCAACCTCAACATGGCAGTTTTAGTCCTCATGGTGGTGGTGGTGGTGTTAGCATAGGTGGTTCT TCCTCTCCTGGTACTGGTACTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGTGTCTCCTTCAGGTGTGCCTGGGAA AAGGAAAAGAGGGAGGCCTCGGAAGTATGCTCCTGCTGATGGACAAGGACAGGTTTCTTTGAGACTCTCTCCGATGTCTG CTGCCACTGCTAACTCCTCCCCGGGTTCGACAACGCCTTCCCAGAAAGGCCGTCGAGGGCGCCCACCGGGAAGTGGAAGG AAGCAACAGCTAGCTGCATTAGGTGAATGGATGAACAGTTCTGCAGGACTAGCTTTTTCACCTCATGTTATCACCATTGC AGCTGGGGAGGACATTGTTGCAAAGCTGTTGTCATTTTCACAACAGAGACCAAGGGCTTTATGCATTTTGTCAGGATCTG GGACAGTTTCTTTAGTCACCCTGCGCCAGCCAGCTTCGACTAGTGTCGGTGTTACGTATGAGGGCCGATTTGAAATACTG TGCTTGTCTGGTTCTTATTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACAGGTGGCATGAGTGTTTCCCTTTCAAG TCCTGAAGGCCATGTTATTGGTGGTGCTGTCGCTAGGCTTATTGCTGCAAGCTCTGTGCAGGTGGTAGTTTGCAGTTTTG TATATGGAAACTCTAAGCCAAAGACAACAAAGCAAGGGTCCACAACAAAAGATGAGGATGATTCAGAGCCTCAGAGTAGT GATAAGTTAGCTTCACCAGGCAGTGCTGCACCACCAAATCAAAACTACACAGCATCTGCAGCAGGCATTTGGCCTGCATC AAGGCCTCTAGATATGCAAAGTGCACACCAGCAACACACTGGTATTGACCTGATGCGTGGGTGA
Protein sequence (LotjaGi2g1v0433700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGREAMAFSGGSAPYYIHRGGVGASDQGTQSGGFQLQPPSGFRPLSNARSGSAFAVDHQPQHGSFSPHGGGGGVSIGGS SSPGTGTGGGGGGGGGGGVSPSGVPGKRKRGRPRKYAPADGQGQVSLRLSPMSAATANSSPGSTTPSQKGRRGRPPGSGR KQQLAALGEWMNSSAGLAFSPHVITIAAGEDIVAKLLSFSQQRPRALCILSGSGTVSLVTLRQPASTSVGVTYEGRFEIL CLSGSYLVAEDGGPHNRTGGMSVSLSSPEGHVIGGAVARLIAASSVQVVVCSFVYGNSKPKTTKQGSTTKDEDDSEPQSS DKLASPGSAAPPNQNYTASAAGIWPASRPLDMQSAHQQHTGIDLMRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 162 | 162 | - | – | |
| PANTHER | 1 | 359 | 359 | 1.2E-149 | ||
| PANTHER | 1 | 359 | 359 | 1.2E-149 | – | |
| MobiDBLite | 25 | 60 | 36 | - | – | |
| MobiDBLite | 126 | 151 | 26 | - | – | |
| ProSiteProfiles | 173 | 316 | 144 | 34.762 | ||
| SUPERFAMILY | 178 | 295 | 118 | 1.75E-24 | – | |
| Gene3D | 180 | 307 | 128 | 4.7E-9 | – | |
| Pfam | 181 | 294 | 114 | 7.4E-26 | ||
| CDD | 181 | 293 | 113 | 1.62033E-32 | ||
| MobiDBLite | 300 | 367 | 68 | - | – | |
| MobiDBLite | 305 | 319 | 15 | - | – | |
| MobiDBLite | 320 | 341 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi2g1v0433700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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