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LotjaGi2g1v0436100.1

Overview

Field Value
Gene ID LotjaGi2g1v0436100
Transcript ID LotjaGi2g1v0436100.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT1G63910.1 myb domain protein 103; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|V7CMD4|V7CMD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0436100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:93259345..93261194) extracted from Lotus japonicus Gifu genome v1.2.

GAGAGACCTAACTATCACACACAAATTCCCTCATTTGATGCTGGCATTATAGGCCACTGAGGGAACAAGAGAGAAAAAAA AACAGGAAAACAAGAAGGAGAACAAGACACATAATTATTACTAGAAAAAGAAAGATGGGTCGGCATTCTTGCTGCAACCA ACAAAAGGTTAAGAGAGGTCTTTGGTCCCCTGAGGAAGATGACAAACTCATCCAATACATTACCACTCATGGCTATGGCT GCTGGAGTGAAGTTCCAGAAAAAGCTGGTCTGTCTTTCTTTATTTTAATATTTTACAAGTAATTTCTTTATCAGCTACAA TATATATTACTCTTTCTTCCATGGTTTGGTTGATGATGGAATTTTTCTCAACTAGTTTAATTTGTTTGGGTTTTAGGGCT TCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACTTG AAGAGGAAAAGCTAATTATAACCCTTCACAGCCTTGTTGGCAACAGGTTTGAATCATATACTGACCCTAGCCTTATCAAT TAAGCATTTTGAATTATGATCAGTCCCCCCTTGTTTCTTCTTCTTGATTTATCTCTTTCTTTTCTTGTTAAATCAGCCAA AATATGTTGTTGTATTTGGAAAATGCAGATGGGCTCACATTGCTAGCCACTTGCCTGGTAGAACAGACAACGAAATAAAG AACTATTGGAACTCTTGGATCAGAAAGAAAATAAGAAAGCCTTCATCAATCACTAATCCTCCACAAAGTGTTGATCATCA CCATCCCCTTCAGCTCAATTATAATTTGAATAAAGTAGATCACTTTGCTAACCAAGACAATACAATAGCAAAGCCACCGT TACAAGATACCTTATTTTCTCCCACACGCCCTATATTTATGTTTGACACTACTTCAACAGAAGTCACCACCAATGCATCT GCAGTACTCTTCCAAGAGACATTTGATTTGAGTCCTGAAACGTGGCACTTGAGCAATCATCAAGTCGAAGCCATTACTCC TCATCTTCCAACAACTTTTACAGCAGCTGAAGTAATTGATCCTACTAATTATTATCTGCCACCATTGATAGAGAACGAGG AAAACGTTGTGCCAATTGAGTCTTGCAATGTGAAAGATGAAGGAGAAGTAATTACACTGGAATCAATGCAGAGGCAAGAG TTGAATAGTGATTGGGTGGAGACCCAACAGCAATGTCCTAGCTTTCTTTTCTGGGACAATACTCACAATAGTAATTTTGA TGTACAACTTGGAGGGGGAGAACTAGCACCAAATTCATCAAATATGGGAACAAACACACTTTCTCCTTTTCCATTTTCAA CTTTATGAGATAACAATGACTGTGAAGTGAAGATTGTCCCCACTCTTTTGGATCTCATGCTCCCTCTCTAGTGGTCTTTT CTTAATTATAATCTTGCATATTTGGAAGTCATTGTACAATTGATTCTGAAGTCAAAATTAATAATTACGGGAAGAAACTT AGGAATGGAATGGCCCATACATGCTCTAGGAAAGAGCTTTCAGAAATGGAATGGTTCAGGCCAGGATGAAACCGGCAGAG CTTGCTCCTTCTCAGTTTGATTTAATTTCCCCACTTTTGATTGCTGATTGACAAAAATGAGTGAAGATAATATCATGTAT GTATTTATGTTATATATTATAACCAAAGTTATTGAATGTTTTGACATGAAAGAGGAAAAAGAAAAGAGAAATAAGGGCGA TTGAGACAGGGATGAAATGAGTTTGATTTAATTTTGGTATTTGACTGTTCATGTGGTGGATTCTGAATGATAATCATGGG TTTGCCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTCGGCATTCTTGCTGCAACCAACAAAAGGTTAAGAGAGGTCTTTGGTCCCCTGAGGAAGATGACAAACTCATCCA ATACATTACCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTC GCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACTTGAAGAGGAAAAGCTAATTATAACC CTTCACAGCCTTGTTGGCAACAGATGGGCTCACATTGCTAGCCACTTGCCTGGTAGAACAGACAACGAAATAAAGAACTA TTGGAACTCTTGGATCAGAAAGAAAATAAGAAAGCCTTCATCAATCACTAATCCTCCACAAAGTGTTGATCATCACCATC CCCTTCAGCTCAATTATAATTTGAATAAAGTAGATCACTTTGCTAACCAAGACAATACAATAGCAAAGCCACCGTTACAA GATACCTTATTTTCTCCCACACGCCCTATATTTATGTTTGACACTACTTCAACAGAAGTCACCACCAATGCATCTGCAGT ACTCTTCCAAGAGACATTTGATTTGAGTCCTGAAACGTGGCACTTGAGCAATCATCAAGTCGAAGCCATTACTCCTCATC TTCCAACAACTTTTACAGCAGCTGAAGTAATTGATCCTACTAATTATTATCTGCCACCATTGATAGAGAACGAGGAAAAC GTTGTGCCAATTGAGTCTTGCAATGTGAAAGATGAAGGAGAAGTAATTACACTGGAATCAATGCAGAGGCAAGAGTTGAA TAGTGATTGGGTGGAGACCCAACAGCAATGTCCTAGCTTTCTTTTCTGGGACAATACTCACAATAGTAATTTTGATGTAC AACTTGGAGGGGGAGAACTAGCACCAAATTCATCAAATATGGGAACAAACACACTTTCTCCTTTTCCATTTTCAACTTTA TGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRHSCCNQQKVKRGLWSPEEDDKLIQYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTLEEEKLIIT LHSLVGNRWAHIASHLPGRTDNEIKNYWNSWIRKKIRKPSSITNPPQSVDHHHPLQLNYNLNKVDHFANQDNTIAKPPLQ DTLFSPTRPIFMFDTTSTEVTTNASAVLFQETFDLSPETWHLSNHQVEAITPHLPTTFTAAEVIDPTNYYLPPLIENEEN VVPIESCNVKDEGEVITLESMQRQELNSDWVETQQQCPSFLFWDNTHNSNFDVQLGGGELAPNSSNMGTNTLSPFPFSTL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 243 243 1.1E-121
IPR015495
PANTHER
PTHR10641:SF1164
1 243 243 1.1E-121 –
Gene3D
G3DSA:1.10.10.60
6 66 61 8.3E-19 –
ProSiteProfiles
PS51294
9 61 53 17.107
IPR017930
SUPERFAMILY
SSF46689
11 108 98 1.35E-29
IPR009057
SMART
SM00717
13 63 51 3.5E-12
IPR001005
Pfam
PF00249
14 61 48 1.9E-15
IPR001005
CDD
cd00167
17 61 45 2.22462E-11
IPR001005
ProSiteProfiles
PS51294
62 116 55 25.294
IPR017930
SMART
SM00717
66 114 49 1.5E-16
IPR001005
Pfam
PF00249
67 111 45 4.0E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
68 135 68 8.3E-19 –
CDD
cd00167
69 112 44 1.93222E-12
IPR001005
MobiDBLite
mobidb-lite
301 320 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0436100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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