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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436200 |
| Transcript ID | LotjaGi2g1v0436200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT4G11280.1 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6; Swiss-Prot: sp|P31531|1A1C_SOYBN 1-aminocyclopropane-1-carboxylate synthase; TrEMBL-Plants: tr|I1LGD4|I1LGD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93264205..93267471) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTATGTTAATATTGCAAGGACTCTCCTTCGTAGGAAAGTTCATCTATATAGTACTTGGACCATTAACTAAGACGCGC GCTCAACTCTGAAAATCAACGTTAATCTCTGTGGAACATGCTCTCAACTCTCTCTATATATATGTACCTCGATCTCTCGA ACTTGTACTTCATTCACAGCTACACACATTATATATTGTGACTCAAGAGGTAGACACAAACCCCTGCTAGCTTCTCCCTC TGATATTCATTCAACCTTGTGACTAAACAAACATGGAATTGATGAGCATGAACCAACCCCAATTGCTGTCTAAGATTGCC ACAGGCGATGGACATGGTGAAAACTCCCCATACTTTGATGGCTGGAAGGCTTATGAAGATAATCCCTTTCATCCCACAAA GAATCCTAATGGGGTCATTCAGATGGGTCTTGCAGAAAATCAGGTATGTTTCCAGCTACATAACTAATTTCAATTCCCAC AAAATCTCACTAATAGCATGTTTAGATCAACTTATTTTTCCCAATGTCAAATTGACTGGTAATCCGTCACTAAACTGTGA CGGATATAGTACATGAATACACTGATTATTCATTTTTTTCTCTCTTGATTCAAATTATTTGCAGCTTGCTTCTGACTTGG TTCAACATTGGATAAAGAGTCATCCTAAGGCATCCATTTGCACTCCTGAAGGAGTACGTCATTTCAAGGCCATTGCTAAC TTTCAGGATTATCATGGATTGCCTGAGTTCAGAGAAGTGAGTCACATTAATGAGAAACTTTTAGGAAATCAATTAAACAA GGTAATTAATTAGTTAAGTTTGGTTAATGATGATGAACTAACATAACTTGAATTGAACTTCCACAGGCTGTAGCTAAATT CATGGCAAGAACCAGAGGAAATAGAGTCACTTTCGATCCTGACCGGGTTGTTATGAGTGGCGGAGCAACTGGAGCACATG AGGTCACTGCCTTTTGTTTGGCAGATCCCGGAGATGCATTTTTGGTGCCAACTCCTTACTATGCAGGGTAATAAACTCAA TTCAATTTAATTTCCATACATTTAATAGTATGTTTTTTCACTTTAATAAAACTTCTGGCACTTTGTGAATTATCCTTTTA GTTATTACTATAATTGTTTATCTTTGTGGAAGGAGAATTTAGTGCAAGAGAAAATTACTATGGAAGTTGCGATGATGTAC TTTAATTAAAACAAAGCTAGAATTGATTTTCTGTTCTATTGACTGCCTATGTAACCTTCCAGTCCTAAGCAATTAGGCCC ACAAAGTATTAATATTTTGGTATTACAGGGTAATGCAAGTGGATTTGTTGATAACCCAATACAAGATTCCAAGGTCAAAA GCTTAATTAAAATTAGTTAGTTGCAAGCAATGGTTCTCCATTTTGGCCGCGTATAGGACAACACTAATATAATATTATTT AATTTACTTCAATTGATAACATGATACAAGATTACCGGGTCAAAAGCTGAACTAAACCCAATTAATTAGTAAGCACTAGC TCTCCATTAAGCCTTGTAGGTTTGTAGGTGAAGTCAAAACCATTATTTTACTCACTTTCTTTTTTTATTGTTTGTTATGG TCAAAGATAAACCAAACTTGTTTGGATACCTGATGGAAAGTATAAAAACTGAAAAATAATACATTATGATACACTTTTTA GCAATTTACTTCGATAAAAAGTTATTTAAATGAGTTATTTTTCTGTTTTCATACTATTCAAACAGGCTTATACTAATACC ATGAATTTGATTGACCAATCAATAGGTCTTAATTACCTTCTAATAAACAGTTGATTTTCCTAATGCAGTTTTGACAGAGA TTTGAGGTGGAGAACAGGAATTCAACTTGTTCCAGTTATCTGTGAAAGCTCTAACAATTTCAAGCTCACAAAGCAAGCCT TGGAAGCTGCATTTGAGAATGCCACAGAGGAAAACATCAGAATAAAGGGCTTGCTCATTACCAACCCATCAAACCCACTG GGAACAATCCTGGACAGAGAGACACTAAGAACACTAGTGAGTTTCATCAATGAAAAGCAAATCCACCTAGTTTGTGATGA AATATATGCTGCCACAGTTTTCAGTAACCCTGGTTTCACAAGCATTGCTGAGATAATAGAACAAGAACAGGACATAGAAT GTGACCTTGACCTCATCCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGAATCATATAC TCATACAATGATGCTGTTGTCAACTGTGCTCGCAAAATGTCTAGCTTCGGATTAGTTTCCACACAGACCCAATTTTTGTT GGCATCAATGCTTTCAGATGATGTGTTTGTGGATCAGTTTCTGAGAGAGAGTGCAAAGAGATTGGGTGAAAGGTTTGCAA TTTTTTGTAGGGGGCTGGGCCAAGTTAGCATAAAGTGCTTGCAGAGCAATGCTGGTCTGTTTTTATGGATGGATTTGCGT AATCTTCTGGAGAAGCCAACATTTGAAGCTGAAATGGAACTGTGGAGAGTGATCATTCATCAAGTGAAGATCAATATTTC CCCTGGCTCCTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCTAACATGGATGATAGAGCTGTGGAGG TTTCTCTGACCAGAATGCGTGCGTTTGTGAGTCAAAATTACAAGGAGGCTGAGAAGAAACCTTGTAGCCACAGAAAGTTG AGGCTAAGCTTCTCAGCCAGAGGGTTTGAGGATTTCTTGATGTCACCTCGTTCTCCTATTCCTCAATCACCTCTTGTTAA AGCCAGCACTTGTTAAAGCCACCACTTGATCAATTGACATCAATTTTCTCAGCATTCAAGTACATGCTGCTTAATTATTG CTTGATAGATACTCCTTAATAACTCTTTTTTTTTTCACTTGCAATGTGTTGAATTGGATTCATGATGAAAGAAGTTTATA GAGTTTGTAGGATTTTTTCTATTTTCATTTACAATTGTTAATAAGGCTTTTTGTGTGGAAAATTTATGTATTATGTGATG GAAATTATAATTGTGTGATTAAAAGTGTCATTCTACTATCTCAATAAATGAATTGTGGTGTCAAATTCTAAAGAATAATT TTATATTTTGGCACTCCAGTTCCGCTTAAATTAGAGAAAGGAAGAAAAAAATTGAGAAATAATCAAATAAGAGATATCGT AGGTGATTAGATAAAGGAAAAACAAAAATGATAGGAGAAAATAAATGGAAAGGAGATAAAAAAAAGT
CDS sequence (LotjaGi2g1v0436200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGATGAGCATGAACCAACCCCAATTGCTGTCTAAGATTGCCACAGGCGATGGACATGGTGAAAACTCCCCATA CTTTGATGGCTGGAAGGCTTATGAAGATAATCCCTTTCATCCCACAAAGAATCCTAATGGGGTCATTCAGATGGGTCTTG CAGAAAATCAGCTTGCTTCTGACTTGGTTCAACATTGGATAAAGAGTCATCCTAAGGCATCCATTTGCACTCCTGAAGGA GTACGTCATTTCAAGGCCATTGCTAACTTTCAGGATTATCATGGATTGCCTGAGTTCAGAGAAGCTGTAGCTAAATTCAT GGCAAGAACCAGAGGAAATAGAGTCACTTTCGATCCTGACCGGGTTGTTATGAGTGGCGGAGCAACTGGAGCACATGAGG TCACTGCCTTTTGTTTGGCAGATCCCGGAGATGCATTTTTGGTGCCAACTCCTTACTATGCAGGTTTTGACAGAGATTTG AGGTGGAGAACAGGAATTCAACTTGTTCCAGTTATCTGTGAAAGCTCTAACAATTTCAAGCTCACAAAGCAAGCCTTGGA AGCTGCATTTGAGAATGCCACAGAGGAAAACATCAGAATAAAGGGCTTGCTCATTACCAACCCATCAAACCCACTGGGAA CAATCCTGGACAGAGAGACACTAAGAACACTAGTGAGTTTCATCAATGAAAAGCAAATCCACCTAGTTTGTGATGAAATA TATGCTGCCACAGTTTTCAGTAACCCTGGTTTCACAAGCATTGCTGAGATAATAGAACAAGAACAGGACATAGAATGTGA CCTTGACCTCATCCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGAATCATATACTCAT ACAATGATGCTGTTGTCAACTGTGCTCGCAAAATGTCTAGCTTCGGATTAGTTTCCACACAGACCCAATTTTTGTTGGCA TCAATGCTTTCAGATGATGTGTTTGTGGATCAGTTTCTGAGAGAGAGTGCAAAGAGATTGGGTGAAAGGTTTGCAATTTT TTGTAGGGGGCTGGGCCAAGTTAGCATAAAGTGCTTGCAGAGCAATGCTGGTCTGTTTTTATGGATGGATTTGCGTAATC TTCTGGAGAAGCCAACATTTGAAGCTGAAATGGAACTGTGGAGAGTGATCATTCATCAAGTGAAGATCAATATTTCCCCT GGCTCCTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCTAACATGGATGATAGAGCTGTGGAGGTTTC TCTGACCAGAATGCGTGCGTTTGTGAGTCAAAATTACAAGGAGGCTGAGAAGAAACCTTGTAGCCACAGAAAGTTGAGGC TAAGCTTCTCAGCCAGAGGGTTTGAGGATTTCTTGATGTCACCTCGTTCTCCTATTCCTCAATCACCTCTTGTTAAAGCC AGCACTTGTTAA
Protein sequence (LotjaGi2g1v0436200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELMSMNQPQLLSKIATGDGHGENSPYFDGWKAYEDNPFHPTKNPNGVIQMGLAENQLASDLVQHWIKSHPKASICTPEG VRHFKAIANFQDYHGLPEFREAVAKFMARTRGNRVTFDPDRVVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDL RWRTGIQLVPVICESSNNFKLTKQALEAAFENATEENIRIKGLLITNPSNPLGTILDRETLRTLVSFINEKQIHLVCDEI YAATVFSNPGFTSIAEIIEQEQDIECDLDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQFLLA SMLSDDVFVDQFLRESAKRLGERFAIFCRGLGQVSIKCLQSNAGLFLWMDLRNLLEKPTFEAEMELWRVIIHQVKINISP GSSFHCSEPGWFRVCYANMDDRAVEVSLTRMRAFVSQNYKEAEKKPCSHRKLRLSFSARGFEDFLMSPRSPIPQSPLVKA STC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 468 | 459 | 7.4E-261 | – | |
| PANTHER | 10 | 468 | 459 | 7.4E-261 | – | |
| SUPERFAMILY | 21 | 436 | 416 | 8.57E-107 | ||
| Gene3D | 37 | 430 | 394 | 1.3E-146 | ||
| Pfam | 49 | 428 | 380 | 1.1E-102 | ||
| PRINTS | 51 | 77 | 27 | 2.6E-107 | – | |
| Gene3D | 71 | 325 | 255 | 1.3E-146 | ||
| PRINTS | 84 | 100 | 17 | 2.6E-107 | – | |
| CDD | 89 | 433 | 345 | 1.20718E-59 | – | |
| PRINTS | 121 | 141 | 21 | 2.6E-107 | – | |
| PRINTS | 143 | 164 | 22 | 2.6E-107 | – | |
| Coils | 176 | 196 | 21 | - | – | |
| PRINTS | 197 | 221 | 25 | 2.6E-107 | – | |
| PRINTS | 233 | 256 | 24 | 2.6E-107 | – | |
| PRINTS | 270 | 294 | 25 | 2.6E-107 | – | |
| ProSitePatterns | 276 | 289 | 14 | - | ||
| PRINTS | 302 | 325 | 24 | 2.6E-107 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi2g1v0436200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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