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LotjaGi2g1v0440900.2

Overview

Field Value
Gene ID LotjaGi2g1v0440900
Transcript ID LotjaGi2g1v0440900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Phosphatase 2C family protein; TAIR: AT4G26080.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q5SN75|P2C08_ORYSJ Probable protein phosphatase 2C 8; TrEMBL-Plants: tr|G7KAL2|G7KAL2_MEDTR Phosphatase 2C family protein; Found in the gene: LotjaGi2g1v0440900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:93737090..93739002) extracted from Lotus japonicus Gifu genome v1.2.

CAGAGCTGTACGCTTCAGATTTAACTCTTCAACATCGGGGACTACCCTGCTTCGTGTCATCGTCTCACGTATACAAAACC AAAGTTAGACACAAAGACTTTCCTCTTCAAACAGGAAACAATAACTCATCAAAGAAAATACAAAGCAAAAGACATTGAAG CTGAACAGAGCGTGCTGTATGGTATGGTGAAGGAAGCCATAACAATATGTTGTGAAAAAGCTGATCGTGTAACACAAAAC TACTGTATACGAATAGTATACCATGGAGGAGGGTGATACTGATCATATTATTACTACTACTACCAAAACCAAAACCAAAG AAATTGAACGACGCTTCAATAATTACAGAAGGAAGAGAAAGCGACCTTGTAAGGTCGCTTCAATCCCCACAAGCGTCCAA CACAAGTTCACCGACAACAAAAACACCGCCACCGCATCACATGGTTTCATTTCCGTGATCGGCCGCCGGAGAGCGATGGA GGACGCTGTCAGGGTGGTTCCTCGTTTCGTCACGGCCGAGCACAGCCCGTCGGGATATGATTTCTTTGCTGTTTACGATG GTCATGGAGGGACGGTGGTGGCCAACGCTTGCCGTGAGAGGATGCACTTGTTGCTGGCGGAGGAGGTGAAGCAGGGGTTG GCGAGCGGGGATCAGGGGTTTGATTGGTTCAGAGCCATGTATTCGTGTTTCATGAGGATGGACAACGAGATCGGTGGTGG TGGAGGGGATGATGACGTGACCGTGGGTGAAGGGAACACGGCGGGTTCTACGGCAGCGGTGGTGGTTGTCGGGAAGGAGG AGATCGTGGTGGCGAATTGTGGGGACTCAAGGGCGGTGTTGTGCCGTGGCGGTTTAGCTATTCAACTTTCACGTGATCAC AAGGTGAGATGAGAGTCACATTTTATTTACTACTAAAGAAAGGGTCTTAAAAAAAAAGACTCTAGTTAAAGTTTGAGTTA TCCTAATTCGTAGAAATGAACCAATAATCTAATAATTGTTCAATTTATTTCAAATATCATTGATTCACCTAAAATTATGA TGATTTAACTCAAACTTTTGCTTAGGGTTATTTAGACAATTCGTATAACGGGGTTTGTTTGTTGTTTGCTTGATTGAATC AGCCTGATCTTCCGGATGAAAAAGAGAGGATTGAAGCGGCAGGGGGAAGAGTGATTGGTTGGAACGGGAATCGCGTTTTA GGAGTACTTGCAACTTCCAGATCCATAGGTAAATGCCTCACTTCAAGCTTTATGTACGTAATTATATTGCATGGTGTTTG TGTAAATACTTAAGTGACAATAATGTAAACTGTGAAGCAAGCAATACTTGAAAGATCAAAACTGGAAATGTATGCTGATG CAGGTGATCACTGCATGAAACCTTTTGTGATATCAAAACCAGAGATCAATGTGGACGCAAGAACAGAGTTAGATGAGTTT CTAGTGGTGGCGACTGACGGTCTATGGGATGTAGTGACCAACGAGTATGTATGTGAAGTGGTAAGAAGTTGCCTAAGAGG GCAAATGAGGAGGAATATGATAAAACATGAATCAACTAGAAGTGATCATGCAGCAGAGGCGGCAACGTTGTTGGCGGAGT TGGCAATGGCTAGGGGAAGCAAAGACAACATCAGTATCATAGTTATACAGCTCCAGAGCCATTAATTCAACCGCCTAGTT TTATTTATTTACATTTCCTCCTACTGTTTAATCTGATTCTCTCTTTTAATTTTTCACCTCTAATTTCTCTATCGACCCAA GCCAAGCTGTCTTTTGTTAAAATTTACTAATTTATATTAGGCTCTCTTCAGAGTTTTAAAAGAAAGGAACACACTTAAAT TGAAAAATGTTGGGTTGACATTTCATTTTCACCTTCAACTTAGATAAATAATAAGGGAAAAGAGAGAAATGAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0440900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGGGTGATACTGATCATATTATTACTACTACTACCAAAACCAAAACCAAAGAAATTGAACGACGCTTCAATAA TTACAGAAGGAAGAGAAAGCGACCTTGTAAGGTCGCTTCAATCCCCACAAGCGTCCAACACAAGTTCACCGACAACAAAA ACACCGCCACCGCATCACATGGTTTCATTTCCGTGATCGGCCGCCGGAGAGCGATGGAGGACGCTGTCAGGGTGGTTCCT CGTTTCGTCACGGCCGAGCACAGCCCGTCGGGATATGATTTCTTTGCTGTTTACGATGGTCATGGAGGGACGGTGGTGGC CAACGCTTGCCGTGAGAGGATGCACTTGTTGCTGGCGGAGGAGGTGAAGCAGGGGTTGGCGAGCGGGGATCAGGGGTTTG ATTGGTTCAGAGCCATGTATTCGTGTTTCATGAGGATGGACAACGAGATCGGTGGTGGTGGAGGGGATGATGACGTGACC GTGGGTGAAGGGAACACGGCGGGTTCTACGGCAGCGGTGGTGGTTGTCGGGAAGGAGGAGATCGTGGTGGCGAATTGTGG GGACTCAAGGGCGGTGTTGTGCCGTGGCGGTTTAGCTATTCAACTTTCACGTGATCACAAGCCTGATCTTCCGGATGAAA AAGAGAGGATTGAAGCGGCAGGGGGAAGAGTGATTGGTTGGAACGGGAATCGCGTTTTAGGAGTACTTGCAACTTCCAGA TCCATAGGTAAATGCCTCACTTCAAGCTTTATGTACGTAATTATATTGCATGGTGTTTGTGTAAATACTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0440900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEGDTDHIITTTTKTKTKEIERRFNNYRRKRKRPCKVASIPTSVQHKFTDNKNTATASHGFISVIGRRRAMEDAVRVVP RFVTAEHSPSGYDFFAVYDGHGGTVVANACRERMHLLLAEEVKQGLASGDQGFDWFRAMYSCFMRMDNEIGGGGGDDDVT VGEGNTAGSTAAVVVVGKEEIVVANCGDSRAVLCRGGLAIQLSRDHKPDLPDEKERIEAAGGRVIGWNGNRVLGVLATSR SIGKCLTSSFMYVIILHGVCVNT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF716
26 246 221 1.4E-81 –
PANTHER
PTHR13832
26 246 221 1.4E-81
IPR015655
SUPERFAMILY
SSF81606
43 248 206 1.31E-45
IPR036457
SMART
SM00332
48 261 214 1.2E-35
IPR001932
Gene3D
G3DSA:3.60.40.10
52 255 204 2.3E-58
IPR036457
CDD
cd00143
59 243 185 2.25405E-53
IPR001932
ProSiteProfiles
PS51746
59 263 205 31.323
IPR001932
Pfam
PF00481
60 244 185 4.6E-38
IPR001932
ProSitePatterns
PS01032
94 102 9 -
IPR000222

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0440900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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