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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0442400 |
| Transcript ID | LotjaGi2g1v0442400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0442400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93818952..93821847) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAAAGAAAATAAGAGAAGATATGGGACTTGATTGATGAGTTGAGCAGGTGGGGAAAGGTCTTCTCCTAAGAGTAGG GTGCAAGTCTCAATGAAGGAGGACCATCACCCAATCAAATCTGTCAAAGAAACAACAGAGGCTTATGAAGGAAGATAAAA TGAAGGGAGGGGGGTACTTATTGTTCAGCTTCTGATTCTGAATGCTTTAAAACTTTAGTCATTTCTTCCATTTGGGACCT TAGCAAAAAGAGAGAACCCACTTCTCTTCCAAAAGGGTTGGAGGTCTCAACCACCCTTTGAGTGCTGTACCTTTTAGAGA TTTGTAGGTTACTGTCCATCCACTTTGAGCATTGCTGGGTTGTCACTAAGAGCAAGGAGCAAGAAGAGTAAGACTGCAAG AGGAGGGGAACCAGTAGCTTCAAGCGAAAATCAGTTTTCTTCAACTGGTACCTCTTTCTTTGTTTATTTCGATCATTACT TATTGTCTTTTTACACTTGCTTTCTCATTTATCTGCCAAAATAAGATGAATATTATGTTGAGTTTGAATGTTTAATGTAT CTGATTCTCATTTCGAAAAAAGACCAGTGATGACCATATGTCTTTCCATGAGCCTTCACTGCTACTTCCATATAAATTTG TGAACACAATCACGAGGAAGAAAAATATATGAAAAAGTTTGAACACAGACACTGTTCAGAATCACTTACAGACACAAACC CAGACTTTACTCTCAAGTAGGTGACACTGTTTATAAATGCATTAGTTCCTACAGTTTTGTTTGCAGGATGGCATCGGCAG AAGGAGTGAGCAGAAAAGGGCCAAACTGGCTTGCACTTCCAAGAGAAGTGACAGAAAATATATTGCAAAGGCTTCATATC GATGAAATTGTGACGAGTGCATGTCTAGTGTGCCCTTTATGGTGGAACATTTGCAAGGACCCTCACATGTGGCGCACCAT TGCCATCACCCACCCCAGATATTCATTCTACAATTCGGTGGATATATGTTCCTATGCCATTAGAAGAAGTTATGGTCATC TGGAAGACATTAGTATTGACTCCATTGCCACTGATGATCTCATGGACATTGCTAATAGGTATATTTTCTTTCTGCTTGCT ATATGTATGTCAGTTAATGTAGCAATTACAGTTTGGCTAGTTGATAGTGGGTTACGATTCCCTAACTTATGATTTCCCAT TAACTCGATCGCGACTCATCCTCTGGGTGGCAATAACTTGTTAGGTACACAGTCCCCTCAAATACTTAAGCCTTGCGCTT ATTAGGCTTTAAGAGTTTCCTCAGGGTTTGAACTTTGAACCGAGTTATTGAGGAGAATGACTCGGTATTTAAACCGGCCT ACCGTGCACAACAGCTTGGTAGGCACACTTAGTATTAATTGTATCACACGATATTAATTGTATCCATGAGTATATATATT CTTATTTTCTTTTATCATGCATTATGTATAACAGTGTCAAAATTTCTTCATATGTTACAGCACAAGTGTTCTACGTCGCT TATGCCTTTTAGACTGCAACAGAATTTCAGATAGAGGGATGATGGAAGCTGTGAAGAAGTTTCCATTATTAGAGGAGCTT GACATTTCATATTCAAGCAACATAACTAAAGATTCTCTTGAAGAAATTGGCCGGTGTTGTCCTTTTTTGAAAACATTAAA ATTTAACCAGATTAGCTTCTGGAGGTCATCTTTCTCTGATGATAATGAGGAGGCGTTTGCTATAGCTCAAACCATGCCTG CTCTCCGCTATCTACAGATTATTGGTAACACTATCAGTGATGTTGGCTTGCTTGCCATTCTCAATGGTTGCCCTCTGCTT GAATTTCTTGACCTTCGATGTTGTGAATTTCTTGATTTGAGTGGTAGCTTAGGGAAAAGGTGTCGTGAGCAGATCAAACA TTTACTTCTTGTCATTGATCCAGATGATTTTCCTTCCGTTACTCCAGATAATATATGAATGAAGTATGTAGGTCTCTATT TATTGAAAGTATATGTTGACAGACATGATCAGCTGGGAATTTATTATTGTAGTTTTTAGATCACATAGACTACGGTTATG TTGACCATTGGGTACTAGTTGAAAAACACAAATGGCTTGTCTTTTTTGTTCTTCAATATTACCTAGTTTTTTATTGTTGT TATTTTTAGTATAGATCTGTTTCTAAGCAACTCATCCATCATTGCATATGGTTGGTTACCGCCACTTTAATCAGTTTCTG GGTTGATATTGTGTCTTTCTGTTAGTGAAACCTATGAGTTCTGGGCCTAAACTTGTTTGCTTTAAAGTGTTTTCTTAAAT GTAAATTACGTTAATTTGAAGCTCCTTTTGGCATAAGCATCAGATTGGAGAAGATAGATGGAAAAAGGAATAGATGTTGA ATAAGCATGAATTGAATGAATGGAAAACTAATGATATTTTATTAAACGTTGCAGCAGATTATTTATCATCTCCAGCTCAT CATTCTTAAAAGTTACAACACAGCAATATATTGAATAGGTACAGGACCAGAATCAAGTAATTAACATAGCTCAATATATT ATACACACCAATATAATGCAATAACAAGAACTACTAGTACTTGTGGACATTGGATTAAAGGTGTAAGTCTGGTTGCCACA ACCTGATGAATTCCATGAGGTTCTTTAAAATCCAGTGAAGTTGTTGAAATGAGGTACCAGGGTTCACATTCCTTTCCAAA CACCCTCATCAATAGACAAGCAATAGAGTTTTGAGTGGCTAATTTTTCAATGCTCCCTGCACCAAATTTCCTTAATTTTT CTTCTATGTTCTAAGTATCCAACATACTCTGAGAAGATATGGTCAGATGGATTTACAAATAAGCTAGTAACCCAAGCACA CAAAGCAGCAAATAGA
CDS sequence (LotjaGi2g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGGCAGAAGGAGTGAGCAGAAAAGGGCCAAACTGGCTTGCACTTCCAAGAGAAGTGACAGAAAATATATTGCA AAGGCTTCATATCGATGAAATTGTGACGAGTGCATGTCTAGTGTGCCCTTTATGGTGGAACATTTGCAAGGACCCTCACA TGTGGCGCACCATTGCCATCACCCACCCCAGATATTCATTCTACAATTCGGTGGATATATGTTCCTATGCCATTAGAAGA AGTTATGGTCATCTGGAAGACATTAGTATTGACTCCATTGCCACTGATGATCTCATGGACATTGCTAATAGCACAAGTGT TCTACGTCGCTTATGCCTTTTAGACTGCAACAGAATTTCAGATAGAGGGATGATGGAAGCTGTGAAGAAGTTTCCATTAT TAGAGGAGCTTGACATTTCATATTCAAGCAACATAACTAAAGATTCTCTTGAAGAAATTGGCCGGTGTTGTCCTTTTTTG AAAACATTAAAATTTAACCAGATTAGCTTCTGGAGGTCATCTTTCTCTGATGATAATGAGGAGGCGTTTGCTATAGCTCA AACCATGCCTGCTCTCCGCTATCTACAGATTATTGGTAACACTATCAGTGATGTTGGCTTGCTTGCCATTCTCAATGGTT GCCCTCTGCTTGAATTTCTTGACCTTCGATGTTGTGAATTTCTTGATTTGAGTGGTAGCTTAGGGAAAAGGTGTCGTGAG CAGATCAAACATTTACTTCTTGTCATTGATCCAGATGATTTTCCTTCCGTTACTCCAGATAATATATGA
Protein sequence (LotjaGi2g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAEGVSRKGPNWLALPREVTENILQRLHIDEIVTSACLVCPLWWNICKDPHMWRTIAITHPRYSFYNSVDICSYAIRR SYGHLEDISIDSIATDDLMDIANSTSVLRRLCLLDCNRISDRGMMEAVKKFPLLEELDISYSSNITKDSLEEIGRCCPFL KTLKFNQISFWRSSFSDDNEEAFAIAQTMPALRYLQIIGNTISDVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKRCRE QIKHLLLVIDPDDFPSVTPDNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 245 | 239 | 1.0E-80 | – | |
| PANTHER | 7 | 245 | 239 | 1.0E-80 | – | |
| Gene3D | 8 | 58 | 51 | 1.0E-7 | – | |
| ProSiteProfiles | 11 | 58 | 48 | 9.842 | ||
| SUPERFAMILY | 11 | 81 | 71 | 5.49E-11 | ||
| Pfam | 14 | 60 | 47 | 6.1E-6 | ||
| Gene3D | 64 | 247 | 184 | 3.6E-28 | ||
| SUPERFAMILY | 74 | 232 | 159 | 9.22E-19 | – | |
| SMART | 105 | 130 | 26 | 5.7 | ||
| SMART | 131 | 156 | 26 | 0.16 | ||
| SMART | 189 | 213 | 25 | 7.6 | ||
| Pfam | 192 | 210 | 19 | 0.49 | ||
| SMART | 214 | 237 | 24 | 260.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0442400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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