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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0443700 |
| Transcript ID | LotjaGi2g1v0443700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G21100.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|G7K989|G7K989_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0443700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93931504..93936589) extracted from Lotus japonicus Gifu genome v1.2.
GGCTGTTTTGTAGGCTTTTGCTGTTGTTGACGATTATCCATCCATCATCCATGTAGGTAGTACTAGTAGTACTAGTCTAG TAGTAGTGGATCTCACAAATCTACCGCTCTTACCCTCCCTCCATTAGATAGATACAAGAGAGAGATTATCAGCAATTATC AGATTACAGAGAGAGAGTGAGAGAGTGAGAGAGAGAGTGAGAAATCAAACACAAACAAAAACCAAAACAAAAACAAAAAC AAAAACATACTCACTCACTCACTGAGAGTGTTGTTGTGTTGTTCTGCCATTATCTCCGCCGTCACCGTCGCCGGAGAAGA ATGGGTTCTTTTGAAGCCACCAATGTGGTCCTCTCAAGAATCAAAAACATTGAACCTGAAAACGCTTCCAAAATCATGGG TTATCTCCTCATGAACCTTGAAGACTCTGAACTCTTGCGTTTAGCTTGTAGCCCTGACCCTGTTTTGCACACCATCATTC CCAGGGTTAAGACCCACCTCGGTTTAACCTTAACCCCTTCCTCTCCCTCCACCGCCGCAAGACCCATTTCTACCACCAAC AACAACCCATTCAACCCGTTTTCAAAGGTTTCCCCTAGAATCCCCACCCCCACCAATGGCTTTGACTTCTCCAGAAACCC GTTTTCACTCTCTGGGTTACCCAAAAACCACCCCATTAGTCCAACTTCGAGTTCTCTACTCTCCTATGAGAACATCCGTG CTGCTTCTTCGTTTCAACCCCGTGTCAACAACGGTGATGTTGATCTTGTTGATGAGCAGCAAGTGAATGAGTTCTTCCCG TTTCTCAATGAACCCTCTAACAACGATGATGCGTTCGATCCACATCTTGAACCGGGTATTGGGGGGCCCAATTGGCATTC TGTCAACAATGGTGATGCTCATTTTCACAGAAGGAGCTTCTCTGCTAGTGATGCTTGTTTTGGGTGTGAGGAAGGTGGTG GCGGCGGTGGTTCAGGAATTGGTTTTAAGCCATGCCTTTACTTTGCAAGAGGGTTCTGTAAAAATGGCTCCAATTGCAAG TTCGTTCATGTTGCTTTGCCTGATACACCAGATGCTAGTGCCATTGTTGGTTCCCCGGGAGAGCTGATGAGGCGTGAGGA GCTTTTGAGGTTCAAGGTTGCTCAGCATCAAAGATTGTTGGCTGCATCGCAGTTAGTGGCTGGAACTTCACCATCCTCAC ATGACAAGTACATTGATTTTTTGATGCAGCAGCAAAATGATCCCCAAAGGTTTAGTAGAGATTTAGTTTTGTTTAATTTT TAATTTTTTTACCTCTTTTTGGTTGCAAATTGCAAAGTGATATTTTGGTGTTGTATGTTTGTCTTGCATTTCAGAGTGGC TGCTGCTGCATCAGCTTTCAATATGGGCGAGGAATTTTGTAACTTTAGCCGGGGAAGGATGGAAAGGAATGACTTTCTAG CAATGTTTTCGGGGGAAAAGACCAATTCCGCGTCGCGACAGATTTATTTGACATTTCCCGCTGAAAGCACATTCAAAGAT GAGGATGTTTCTGAGTACTTCAGGTAGAACATGCTACAAACAACACATTAATGCAGTGCCTGTGAAAATTCTGGAGTTAT ATGACATTATTGTTCGCAGCCGTTTTCCACGATTTTATCTGCACACACCATAAATGGATTTTTATTGCCTCTGATATTGT TCCTGACTTATTACTGAAGTAGTGTGATAGTGTGCCGTCCGCCATACTTGATTGATTTGAGCTTGCTTGGTGATTAAGGC CAGTGTTTATGTTGTTACTGTATAAAAATAACTTCACTTCCAAATCATATGTTTTATTTCGAACATGCTGAATATATGTT TTTTTAATATGCAATTAACTTTGCATAGCATGATGTGTATGTCTCCCATGAGGAGACCTGGTTAGTCCTGTGCATTTCCA GGTATCATCTCAATATATGCTTTCCATTAAAGATAAAATGTCTTAATTTCTCTTGTTAAGAAGTTTGGAAAGTAATGAAG TTCATAGTTTATACTTATAGTCCTTGCCAATGCTGATTTCGTATATATTGCTACTTGCTAGTCTTAATTGGAATCTTCTA TCGGACTATCCGTTATACAGAATATATATCCCAGTTAACATAGGTTACGAGTCTCTCTTACCAATGTCTATTGATTTGTC ATAGGGAAAATCTACTTCAACGGACAATCTATATCTGAATCAAAGGACTTTGATCATGCTAATTACTGATTAGTATGGTC TCTTGAAACTATAAATCTACTACCTTGGTTTGATATAGTCTGTCTTAAGAAAGTATGTGTGAAGTAGTCTATGTTTCAGT TTCAATGTATGAAAGATCTCTCTCATTGGTAAGATCACAAAAATCATTCTCCTTTTGAAAGAAACCTCGAGAAGTGCTTT TCAGAAACAAAACATTGATATAAAGGTTAGGTGTCATAATTTTACAGTTATACTATTGCCTTATTATGACTTTGTGAGTA ATGTCCACCTGACGATGCACGGCATCCCAGGACCTCACAGACAACTCTTTTGTAACAATGATGGGATTTACTTTTATTCA TTTTTGAAAGTGGTAGCGAAGGGTGGATGGAAGCATGTTTGCAATTTAAACCGTTTGTGACAGTGCCGTAGGAATTGTGG CCTCTGAAGGTTATTATACTTTAAAGACAGCCATGCATTGTTCTATTGATTAAGGTTAAGTGTTCTTAGTGATAATGTGG TCCTTATGGCATGTAGGGGAACATTTTTTTGTAAATATTATCAAGTACGGTTTAGGAATTAACTTCGGAATCAGGATCTC TAATGATCTACTTTTGTCTTGTGATATGTTTGCATGCAAGTTCCTATTGTGAGTGTACATATTCATGTGCAACACATTCT AATCCAAATTGAGGGATTTCACTAATAGCTGCTTTTGTTCATTTGAAGCAAATTTGGACCTGTACAAGATGTGAGAATTC CTTACCAGCAAAAGCGTATGTTTGGGTTTGTTACCTTCGTCTATCCAGAGACAGTTAGGCTGATTTTATCCAAAGGGAAT CCTCATTTTATCTGTGATTCTCGTGTACTTGTCAAACCCTACAAGGAGAAGGGAAAAGTTCCTGATAAGTAAGTCGGCAT CATGTTGTTGTTTGGTTTATATTTTGCTATTCCTCAATTAATATTATCTGGCTGATGTATGCAGAAGACAACAGCATCAA CAACAGCAATTAGAGAGGGGAGATTTTTTTCCTCTAAGTCCCTCTGCGTTTGACTCGAAAGAGCCTTATGATTTCCATCT TGGTAATCAAATTTCTCATCTTGGAATTTTGGTTCTACTTGGTTTTTTGGAGACCGTGTGTGCTTAAAATAGTTGCTATG CATTTGCTCTTTCCTCTCGAGCACTGCCACTTCCTCTCGTGCTGCTTCCATCTTGTTCTCATAAAACCTGTTTTATGCAG GACAAAGAGTGTTATATAATCCACATGATATCTTATTGAGGCGAAAATATGAGGAGGAGGCTGAATTGCAGCAAGCGCTT GAATTCCAAGAAAGAAGGATGAAGAGTCTGCAGCTTTCAGACTTGAAGAATAATCCCATTCACCATCAACGCAGCTTCTC CGTTGGTGCTCCGTTTGCCTTTCCCCATCCACTTTCTAGTCATGTTATCAGTGCAGGCCTTTCTTCTGATATAGGAGATA TTACAGGTTAGTCAATCAATGATAGAGTCTGTATGGTTCTAGCAAACATGATTAGGCAGTTTACAATGTTGATATGCTTT TCATTGCAGGATACAGTGGCGGCCTCACTTCTACCAATTCTTTAGAAACTGCTTCTGAGCAGCAGCAGCCACAAAAAGAA GTTGATCCAGCTTGCATTGATGATACTGAGGGTGAGAATATCAAGGATAGTCTGAATGCAGAAGTCACAGATCTCAGTAA GAGGTATATGGAGCTTGAATTTGTATCAGATCTTATTATTTCTTTTGGAGGGTGGTACAAGTTTTGAGGCTGTTCCCCAT TTTCATTTTACATTTCTGAATGATTTGTGTATTTGATCTCAAGTTTTCTGATGTTGTATTCTTATTTCTTCGTGCATGAG AAGTGTGGAGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGATTATATGTCTGACTTCTCTA CATTGACAGAGGTCAAGGAGAGTGCTGAATTTTCTACTAGCTCATCTACTCGTAACAATTTAGAATCAACAACCGCTTCT AGTGATGTGGCTTCCTGTTAGTTTCCCTTACAATTCAAGGTACTTCTGATTGCAATCTGCGTGTTGTTCTTTCCTGCATA ATGAATGTGGATGAATTCTGCTTACAAGTTTGATTCTTTATTTCTTAGGTTCCATTCTGCATATCAAGATTTTGGGTTGT AGGTAAAAAGAATAGAAGTGGCAACAGGGGGAATCATTTACATTAGGGTAAGGTTTCATTTTCCTTTTTTTTTTTTTTTT TCTATTTTAAATTCTTTTGCTAGTTCTTTACAGGTAAAAATCGTCTCAGAATTTGCTTGTGATCTGTTAATTGAGTGCCT CTTTCATTAAATGAATTTTCTCTTGTTGCTTCTTTGTTTTTATGCAGGTTTATAGAAGAAGCATATAGAAGAAAAAAGAT CTTCCAGATGTATAGCCAAATACAACTAGGTTGAAGGAGTATAGATGCTAGAGAAGAATCAAATGAGGTCACCACCACCA TCATCAATACATACTACTAACAGCAAGCTATACATAATGCATACATGGACAGACATTAGTTTTATAAGAGTAGTTTCCTT TTCCTCCTTTCCTTTAATTGTTTTACTCCTTCACCTGAATTATCTATAGGTGTGTTTCACCTAACTAGGCAGAACCAAAT ATTGTTGTTTTACTTTATTTTAATACATACAACCTTTCCAACTATCATTATTGCTATTTTCTGGTGCTTCTGTCTGCGTT TAGGGAGGTGTAAATTTATTTCATTATTGCTTATTAGCTAATCATATAGAAAATATAACATGCTTGTAGTGCGTGTTTGG TTTTGCGATTTGCACATAATCTAAGATATGTTTACTCAAAAGTTCA
CDS sequence (LotjaGi2g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTTTTGAAGCCACCAATGTGGTCCTCTCAAGAATCAAAAACATTGAACCTGAAAACGCTTCCAAAATCATGGG TTATCTCCTCATGAACCTTGAAGACTCTGAACTCTTGCGTTTAGCTTGTAGCCCTGACCCTGTTTTGCACACCATCATTC CCAGGGTTAAGACCCACCTCGGTTTAACCTTAACCCCTTCCTCTCCCTCCACCGCCGCAAGACCCATTTCTACCACCAAC AACAACCCATTCAACCCGTTTTCAAAGGTTTCCCCTAGAATCCCCACCCCCACCAATGGCTTTGACTTCTCCAGAAACCC GTTTTCACTCTCTGGGTTACCCAAAAACCACCCCATTAGTCCAACTTCGAGTTCTCTACTCTCCTATGAGAACATCCGTG CTGCTTCTTCGTTTCAACCCCGTGTCAACAACGGTGATGTTGATCTTGTTGATGAGCAGCAAGTGAATGAGTTCTTCCCG TTTCTCAATGAACCCTCTAACAACGATGATGCGTTCGATCCACATCTTGAACCGGGTATTGGGGGGCCCAATTGGCATTC TGTCAACAATGGTGATGCTCATTTTCACAGAAGGAGCTTCTCTGCTAGTGATGCTTGTTTTGGGTGTGAGGAAGGTGGTG GCGGCGGTGGTTCAGGAATTGGTTTTAAGCCATGCCTTTACTTTGCAAGAGGGTTCTGTAAAAATGGCTCCAATTGCAAG TTCGTTCATGTTGCTTTGCCTGATACACCAGATGCTAGTGCCATTGTTGGTTCCCCGGGAGAGCTGATGAGGCGTGAGGA GCTTTTGAGGTTCAAGGTTGCTCAGCATCAAAGATTGTTGGCTGCATCGCAGTTAGTGGCTGGAACTTCACCATCCTCAC ATGACAAGTACATTGATTTTTTGATGCAGCAGCAAAATGATCCCCAAAGAGTGGCTGCTGCTGCATCAGCTTTCAATATG GGCGAGGAATTTTGTAACTTTAGCCGGGGAAGGATGGAAAGGAATGACTTTCTAGCAATGTTTTCGGGGGAAAAGACCAA TTCCGCGTCGCGACAGATTTATTTGACATTTCCCGCTGAAAGCACATTCAAAGATGAGGATGTTTCTGAGTACTTCAGCA AATTTGGACCTGTACAAGATGTGAGAATTCCTTACCAGCAAAAGCGTATGTTTGGGTTTGTTACCTTCGTCTATCCAGAG ACAGTTAGGCTGATTTTATCCAAAGGGAATCCTCATTTTATCTGTGATTCTCGTGTACTTGTCAAACCCTACAAGGAGAA GGGAAAAGTTCCTGATAAAAGACAACAGCATCAACAACAGCAATTAGAGAGGGGAGATTTTTTTCCTCTAAGTCCCTCTG CGTTTGACTCGAAAGAGCCTTATGATTTCCATCTTGGACAAAGAGTGTTATATAATCCACATGATATCTTATTGAGGCGA AAATATGAGGAGGAGGCTGAATTGCAGCAAGCGCTTGAATTCCAAGAAAGAAGGATGAAGAGTCTGCAGCTTTCAGACTT GAAGAATAATCCCATTCACCATCAACGCAGCTTCTCCGTTGGTGCTCCGTTTGCCTTTCCCCATCCACTTTCTAGTCATG TTATCAGTGCAGGCCTTTCTTCTGATATAGGAGATATTACAGGATACAGTGGCGGCCTCACTTCTACCAATTCTTTAGAA ACTGCTTCTGAGCAGCAGCAGCCACAAAAAGAAGTTGATCCAGCTTGCATTGATGATACTGAGGGTGAGAATATCAAGGA TAGTCTGAATGCAGAAGTCACAGATCTCAGTAAGAGTGTGGAGCAGGCCCTTCCTGATAGTCTCTTTGCTTCACCAACAA AAGCAGCTGGAGATTATATGTCTGACTTCTCTACATTGACAGAGGTCAAGGAGAGTGCTGAATTTTCTACTAGCTCATCT ACTCGTAACAATTTAGAATCAACAACCGCTTCTAGTGATGTGGCTTCCTGTTAG
Protein sequence (LotjaGi2g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSFEATNVVLSRIKNIEPENASKIMGYLLMNLEDSELLRLACSPDPVLHTIIPRVKTHLGLTLTPSSPSTAARPISTTN NNPFNPFSKVSPRIPTPTNGFDFSRNPFSLSGLPKNHPISPTSSSLLSYENIRAASSFQPRVNNGDVDLVDEQQVNEFFP FLNEPSNNDDAFDPHLEPGIGGPNWHSVNNGDAHFHRRSFSASDACFGCEEGGGGGGSGIGFKPCLYFARGFCKNGSNCK FVHVALPDTPDASAIVGSPGELMRREELLRFKVAQHQRLLAASQLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNM GEEFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPE TVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQQHQQQQLERGDFFPLSPSAFDSKEPYDFHLGQRVLYNPHDILLRR KYEEEAELQQALEFQERRMKSLQLSDLKNNPIHHQRSFSVGAPFAFPHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLE TASEQQQPQKEVDPACIDDTEGENIKDSLNAEVTDLSKSVEQALPDSLFASPTKAAGDYMSDFSTLTEVKESAEFSTSSS TRNNLESTTASSDVASC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 654 | 654 | 7.0E-265 | – | |
| PANTHER | 1 | 654 | 654 | 7.0E-265 | – | |
| MobiDBLite | 66 | 93 | 28 | - | – | |
| ProSiteProfiles | 219 | 246 | 28 | 13.807 | ||
| SMART | 221 | 245 | 25 | 6.6E-4 | ||
| SUPERFAMILY | 222 | 243 | 22 | 3.01E-5 | ||
| Gene3D | 222 | 331 | 110 | 3.5E-5 | – | |
| Pfam | 223 | 244 | 22 | 8.9E-6 | ||
| Gene3D | 344 | 446 | 103 | 5.8E-12 | ||
| ProSiteProfiles | 351 | 427 | 77 | 10.292 | ||
| SMART | 352 | 422 | 71 | 4.8E-9 | ||
| CDD | 353 | 422 | 70 | 1.88085E-39 | ||
| SUPERFAMILY | 363 | 441 | 79 | 3.12E-13 | ||
| Pfam | 364 | 409 | 46 | 7.3E-7 | ||
| Coils | 478 | 505 | 28 | - | – | |
| MobiDBLite | 632 | 657 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0443700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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